abstract: Though cities occupy only a small percentage of Earth's terrestrial surface, humans concentrated in urban areas impact ecosystems at local, regional and global scales. I examined the direct and indirect ecological outcomes of human activities on both managed landscapes and protected native ecosystems in and around cities. First, I used highly managed residential yards, which compose nearly half of the heterogeneous urban land area, as a model system to examine the ecological effects of people's management choices and the social drivers of those decisions. I found that a complex set of individual and institutional social characteristics drives people's decisions, which in turn affect ecological structure and function across scales from yards to cities. This work demonstrates the link between individuals' decision-making and ecosystem service provisioning in highly managed urban ecosystems. Second, I examined the distribution of urban-generated air pollutants and their complex ecological outcomes in protected native ecosystems. Atmospheric carbon dioxide (CO₂), reactive nitrogen (N), and ozone (O₃) are elevated near human activities and act as both resources and stressors to primary producers, but little is known about their co-occurring distribution or combined impacts on ecosystems. I investigated the urban "ecological airshed," including the spatial and temporal extent of N deposition, as well as CO₂ and O₃ concentrations in native preserves in Phoenix, Arizona and the outlying Sonoran Desert. I found elevated concentrations of ecologically relevant pollutants co-occur in both urban and remote native lands at levels that are likely to affect ecosystem structure and function. Finally, I tested the combined effects of CO₂, N, and O₃ on the dominant native and non-native herbaceous desert species in a multi-factor dose-response greenhouse experiment. Under current and predicted future air quality conditions, the non-native species (<italic>Schismus arabicus</italic>) had net positive growth despite physiological stress under high O₃ concentrations. In contrast, the native species (<italic>Pectocarya recurvata</italic>) was more sensitive to O₃ and, unlike the non-native species, did not benefit from the protective role of CO₂. These results highlight the vulnerability of native ecosystems to current and future air pollution over the long term. Together, my research provides empirical evidence for future policies addressing multiple stressors in urban managed and native landscapes. / Dissertation/Thesis / Doctoral Dissertation Plant Biology 2014

Freshwater reservoirs store, process, and emit to the atmosphere large quantities of carbon (C). Despite the important role of reservoirs in the global carbon cycle, it remains unknown how human activities are altering their carbon cycling. Climate change and land use are resulting in lower dissolved oxygen (DO) concentrations in freshwater ecosystems, yet more frequent, powerful storms are occurring that temporarily increase DO availability. The net effect of these opposing forces results in anoxia (DO < 0.5 mg L-1) punctuated by short-term increases in DO. The availability of DO controls alternate redox reactions in freshwaters, thereby determining the rate and end products of organic C mineralization, which include two greenhouse gases, carbon dioxide (CO2) and methane (CH4). I performed ecosystem-level DO manipulations and evaluated how changing DO conditions affected redox reactions and the production and emission of CO2 and CH4. I also explored how the magnitude and drivers of CH4 emissions changed spatio-temporarily in a eutrophic reservoir using time series models. Finally, I used a coupled data-modeling approach to forecast future emissions of CH4 from the same reservoir. I found that the depletion of DO results in the rapid onset of alternate redox reactions in freshwater reservoirs for organic C mineralization and greater production of CH4. When the anoxia occurred in the water column (vs. at the sediments), diffusive CO2 and CH4 efflux phenology was affected, and resulted in degassing occurring during storms before fall turnover. I observed that the magnitude of CH4 emissions varied along a longitudinal gradient of a small reservoir and that the environmental drivers of ebullition and diffusion can change substantially both over space (within one hundred meters) and time (within a few weeks). Finally, I developed a forecasting workflow that successfully predicted future CH4 ebullition rates during one summer season. My research provides insight to how changing DO conditions will alter redox reactions in the water column and greenhouse gas emissions, as well as provides a new technique for improving future predictions of CH4 emissions from freshwater reservoirs. Althogether, this work improves our understanding of how freshwater lake and reservoir carbon cycling will change in the future. / Doctor of Philosophy / Freshwater reservoirs store a lot of carbon in their sediments and emit a lot of carbon as greenhouse gases (carbon dioxide and methane) to the atmosphere. However, climate change, land use, and water quality management can change the chemical reactions that are responsible for the production of carbon dioxide and methane, which could have substantial effects on the global carbon budget. Here, I manipulated the oxygen conditions of a freshwater reservoir and monitored the chemistry and greenhouse gas emissions in the experimental reservoir relative to an upstream reference reservoir. I then estimated the methane emissions from the reservoir to understand how the chemistry and greenhouse gas emissions in freshwater reservoirs may change in the future. I found that reservoir oxygen availability controls the magnitude and timing of the chemical reactions that produce carbon dioxide and methane, which in turn alters greenhouse gas emissions. Additionally, I developed models that showed how the magnitude and drivers of methane emissions changed within a small reservoir over time. Finally, I was able to predict the timing and magnitude of methane bubbling from the sediments. Altogether, this work provides evidence how climate change, land use change, and water quality management will affect future water chemistry and greenhouse gas emissions from reservoirs.

<p>This study seeks to investigate the dynamics of dead plant carbon over fifty years of old-field forest development at the Calhoun Long Term Soil-Ecosystem Experiment (LTSE) in South Carolina, USA. Emphasis is on the transition phase of the forest, which is less well studied than the establishment and early thinning phase or the steady state phase. At the Calhoun LTSE, the biogeochemical and ecosystem changes associated with old field forest development have been documented through repeated tree measurements and deep soil sampling, and archiving of those soils, which now allow us to examine changes that have occurred over the course of forest development to date.</p><p> In this dissertation, I first quantify the accumulation of woody detritus on the surface of the soil as well as in the soil profile over fifty years, and estimate the mean residence times of that detrital carbon storage. Knowing that large accumulations of C-rich organic matter have piled onto the soil surface, the latter chapters of my dissertation investigate how that forest-derived organic carbon has been incorporated into mineral soils. I do this first by examining concentrations of dissolved organic carbon and other constituents in soil solutions throughout the ecosystem profile and then by quantifying changes in solid state soil carbon quantity and quality, both in bulk soils and in soil fractions that are thought to have different C sources, stabilities, and residence times. To conclude this dissertation, I present the 50-year C budget of the Calhoun LTSE, including live and dead plant carbon pools, to quantify the increasing importance of detrital C to the ecosystem over time.</p><p>This exceptional long term soil ecosystem study shows that 50 years of pine forest development on a former cotton field have not increased mineral soil carbon storage. Tree biomass accumulated rapidly from the time seedlings were planted through the establishment phase, followed by accumulations of leaf litter and woody detritus. Large quantities of dissolved organic carbon leached from the O-horizons into mineral soils. The response of mineral soil C stocks to this flood of C inputs varied by depth. The most surficial soil (0-7.5cm), saw a large, but lagged, increase in soil organic carbon (SOC) concentration over time, an accumulation almost entirely due to an increase of light fraction, particulate organic matter. Yet in the deepest soils sampled, soil carbon content declined over time, and in fact the loss of SOC in deep soils was sufficient to negate all of the C gains in shallower soils. This deep soil organic matter was apparently lost from a poorly understood, exchangeable pool of SOM. This loss of deep SOC, and lack of change in total SOC, flies in the face of the general understanding of field to forest conversions resulting in net increases in soil carbon. These long term observations provide evidence that the loss of soil carbon was due to priming of SOM decomposition by enhanced transpiration, C inputs, and N demand by the growing trees. These results suggest that large accumulations of carbon aboveground do not guarantee similar changes below.</p> / Dissertation

Les perturbations d’origine anthropique sont à l’origine de l’érosion de la biodiversité avec des conséquences sur la structure des communautés et pour le fonctionnement des écosystèmes. La vitesse de ces changements a stimulé de nombreuses recherches portant sur les effets de ces modifications sur la biodiversité des organismes et leurs propriétés fonctionnelles. En effet il a été montré que les traits des espèces sont plus importants que leur identité elle-même pour tenir compte de leurs rôles écologiques. Même si la majorité de ces travaux ont étudié la réponse des producteurs primaires sur les écosystèmes terrestres, la contribution d’autres organismes est toutefois essentielle pour maintenir un fonctionnement et une résilience des écosystèmes corrects.Les fourmis sont des organismes cibles intéressants pour étudier de telles modifications du fait de leur abondance et de leur dominance écologique. En effet elles ont une distribution cosmopolite et participent à de nombreuses fonctions dans l’écosystème terrestre. Elles sont également faciles à étudier et des méthodes d’échantillonnage standard existent. Bien que de nombreuses recherches aient démontré des modifications dans la composition spécifique des fourmis dans des gradients environnementaux, un nombre réduit d’entre elles ont étudié la contribution de ces organismes sur le fonctionnement des écosystèmes. De plus, les traits responsables de la stabilité des communautés de fourmis en réponse à ces modifications sont encore peu connus. Il est donc nécessaire de développer une méthodologie capable d‘identifier la participation des fourmis dans des processus écosystémiques permettant également de quantifier leur activité afin de comprendre comment ces organismes agissent sur les capacités de résistance et résilience des écosystèmes.Ainsi, cette thèse vise mettre en lumière i) en quoi la simplification des habitats liée aux activités humaines a des répercussions sur les communautés de fourmis, ii) quels sont les traits responsables du succès écologique d’une espèce ou de son déclin au sein d’un environnement donné, et iii) comment ces variations en composition spécifique impactent l’intensité de participation des fourmis aux processus écosystémiques. / Land-use changes have deep consequences on species diversity, community structure and ecosystem functioning. Consequently, many works have tried to understand the effects of such changes on the diversity and functional properties of organisms. It has been demonstrated that species traits are oftenly more important than the identity of species per se in order to account understand the ecological roles of species. Besides, while the majority of assessments about land-use change effects on ecosystem functioning have focused on primary producers, the contribution of other organisms is essential to maintain the functioning and resilience of ecosystems.Ants are interesting organisms to track land-use changes due to their abundance, ubiquity and ecological dominance. Ants are present in most of terrestrial biomes and participate in several ecosystem processes through their consumption of food resources. They are also easy to sample and standard methods exist to provide accurate comparisons between studies. While a number of studies have demonstrated abrupt changes in ant species composition along environmental gradients, only a reduced number of such studies have tried to understand how ant community changes affect ecosystem processes. Moreover, the traits responsible for the stability of ant communities in response to land-use changes are little known. It is therefore necessary to develop a methodology that enables a proper identification of ant participation to different ecosystem processes and their contribution to ecosystems’ resistance and resilience.In this thesis I aim to bring some light about i) how land-use changes affect ant community structure? ii) what traits are responsible of the ecological success of a species or it’s extinction from a given environment? iii) how changes in the species or trait composition affect the participation intensity of ants in different ecosystem processes ?

Pathogens and parasites are increasingly recognized as important components within host populations, communities, and ecosystems. Parasite contributions to ecosystem function most likely manifest as density-mediated impacts of parasites on their hosts, the direct contributions of parasite biomass to a system, and via parasite-induced changes in host behavior and physiology (trait-mediated impacts). Here, a framework was constructed that can be used to conceptualize parasite contributions to ecosystem function (Chapter 1). Then the influence of parasite attack on host movement was explored to further evince the mechanistic underpinnings of trait-mediated parasite impacts (Chapter 2). Additionally, mesocosms were created across a gradient of parasitism to examine how these mechanisms are likely to unfold at larger biological scales (Chapter 3). Lastly, a series of differential equations was created to model host-parasite-ecosystem interactions and generate theoretical predictions about how and when parasites are likely to influence ecosystem processes (Chapter 4). Parasites have many characteristics of ecosystem engineers, but their role has historically been ignored. These studies begin to explore the role that parasitism may have as one of the drivers of ecosystem processes.

No description available.