Pepper and tomato, as two common, popular, and important vegetables grown worldwide, provide human beings with high quality fruit of flavor and aroma, and a high concentration of vitamins and antioxidants. Pepper and tomato production is frequently affected by various pathogens, including nematodes, fungi, and bacteria. Among those phytopathogens, Xanthomonas euvesicatoria (Xe) causes a severe bacterial spot (BS) disease on pepper and tomato. The BS disease could cause a loss of approximately 10% of the total crop yield in the world. Breeding tomato and pepper cultivars with improved BS disease resistance is one of the most important breeding goals. A better understanding of the virulence mechanism of Xe could help breeders design new strategies for resistance breeding. In this dissertation, we characterized the virulence and avirulence functions of four Xe Type Three Secretion Effectors (T3Es): Xe-XopQ, Xe-XopX, Xe-XopN, and Xe-avrRxo1. Xe-XopQ is a Xe T3E that functions as a determinant of host specificity. Here, we further explored the virulent and avirulent functions of Xe-XopQ. We identified another T3E Xe-XopX that could interact with XopQ and subsequently elicit the hypersensitive response in N. benthamiana in the Agrobacterium-mediated transient assay and Xe-mediated disease assay. The interaction is confirmed by bimolecular fluorescence complementation, co-immunoprecipitation and split luciferase assay. Intriguingly, we also revealed that XopX also interacts with multiple Xe T3Es including AvrBS2, XopN, XopB, and XopD in the co-IP assay. The virulent and avirulent functions of XopQ and AvrBS2 are compromised in the absence of Xe-XopX. Since XopX is conserved in diverse Xanthomonas spp., we speculate that Xe-XopX may have a general role required for the pathogenesis of Xe. Xe-XopN has been reported to be a T3E with virulence function via targeting host defense-related proteins, including atypical receptor-like kinase named TARK1 and a 14-3-3 protein to suppress the PAMPs (pathogen-associated molecular patterns) triggered immunity upon Xe colonization of tomato. In this study, we revealed additional virulence mechanisms of Xe-XopN, where Xe-XopN, is required for triggering the water-soaking symptom on Nicotiana benthamiana and pepper plants infected with Xe. In addition, we identified that XopN interacts with a transcription factor, NbVOZ, and represses the expression of NPR1, a key component of the basal defense. Therefore, XopN has a role in maintaining a water-affluent environment for better replication of Xe, and it can also interact with NbVOZ1/2 to regulate plant immunity. AvrRxo1, a T3E of Xanthomonas oryzae pv. oryzicola (Xoc), was previously identified to function as a NAD kinase. Here, we characterized a Xe T3E, Xe avrRxo1, that is a functional homologue of AvrRxo1, which is required for the full virulence of Xe to colonize the pepper and N. benthamiana plants. Overexpression of AvrRxo1 in bacterial or plant cells is toxic. Our group previously demonstrated AvrRxo1-ORF2 functions as an antitoxin that binds to AvrRxo1 to suppress its toxicity. In this study, we identified Xe4429 as the homologue of AvrRxo1-ORF2, which could interact with Xe-avrRxo1 to suppress its toxicity. We also revealed that Xe4429 could bind to the promoter of Xe-avrRxo1 and suppress its transcription. Therefore, we found Xe4429 encodes protein functions as an antitoxin and a transcription repressor in Xe bacterial cells. / Doctor of Philosophy / Peppers and tomatoes are two of the most important vegetables grown worldwide, providing humans with high quality of flavor and aroma, vitamins, and antioxidants. The pepper and tomato production is frequently threatened by various pathogens, including nematodes, fungi, and bacteria. Among those phytopathogens, Xanthomonas euvesicatoria (Xe) causes a severe bacterial spot (BS) disease on peppers and tomatoes. The BS disease can be easily identified due to the appearance of the dark, irregular, water-soaked areas on the leaf, which can cause approximately 10% loss of the total yield of peppers and tomatoes. Breeding tomato and pepper cultivars with improved BS disease resistance is one of the most critical breeding goals. A better understanding of the virulence mechanism of Xe could help breeders to design new strategies for resistance breeding. In my seminar, I will discuss the virulence and avirulence functions of Xe type three secretion (T3S) effectors: Xe XopN, Xe XopQ, and Xe XopX. In my study, I identified Xe XopN is a key factor that regulates the development of the water-soaking symptom on pepper plants infected with Xe. In addition, we revealed Xe XopN interacts with a transcription factor NbVOZ to regulate the expression of NbNPR1 and PR1 genes expression, which may also contribute to the development of water-soaking phenotype. In addition, I identified that Xe XopN could interact with a transcription factor, NbVOZ, and represses the expression of NbNPR1, a key component of the basal defense, and the pathogenesis-related gene PR1. Therefore, Xe XopN has a role in regulating a water-affluent environment to promote bacterial proliferation in the infected plant tissue. Xe XopQ is a Xe T3S effector that functions as a determinant of host specificity. In my study, I identified another T3S effector Xe XopX that could interact with Xe XopQ to trigger the defense response in Nicotiana benthamiana. I also confirmed Xe XopQ physically interacts with Xe XopX inside of plant cells by using bimolecular fluorescence complementation, co-immunoprecipitation and split luciferase assay. Intriguingly, Xe XopX could also interact with multiple Xe T3Es including AvrBS2 in a co-IP assay. The virulence and avirulent functions of Xe XopQ and AvrBS2 are compromised in the absence of Xe XopX.

Disease outbreaks caused by oomycetes can be catastrophic. The first part of this dissertation describes development of a system to identify potential new and durable resistance (R) genes against P. sojae in soybean germplasm. We developed a system to screen soybean germplasm for genes that recognize core Phytophthora sojae RXLR effectors that are conserved within the pathogen species and essential for virulence. R genes that recognize these effectors will likely be effective and durable against diverse P. sojae isolates. We developed a system to deliver individual P. sojae effectors by Type III secretion into soybean using the bacterium Pseudomonas, and we screened 12 core effectors on a collection of 30 G. max lines that likely contain new resistance genes against P. sojae. We identified candidate R genes against 10 effectors. Genetic segregation ratios from crosses indicated that three of these genes have a simple inheritance pattern and would be amenable to breeding into elite cultivars. The second part of the dissertation involves use of a model plant-oomycete system to study the genetic basis of susceptibility to oomycete diseases. We compared host transcriptomes from a resistant and a susceptible infection of Arabidopsis thaliana by the downy mildew pathogen Hyaloperonospora arabidopsidis (Hpa). We identified five gene clusters with expression patterns specific to the susceptible interaction. Genes from each cluster were selected and null mutants were tested for altered susceptibility to virulent Hpa. Most A. thaliana null mutants showed enhanced disease susceptibility, suggesting their involvement in pattern-triggered immunity (PTI). A knockout mutant in the AtGcn5 gene was completely resistant to Hpa Emco5 suggesting that the gene/protein is necessary for Hpa to successfully colonize the plant. This study provided new molecular insights into plant-oomycete interaction and revealed a plant gene that could potentially be engineered to provide enhanced resistance to oomycete pathogens. / Ph. D.

Cotton is harvested with large and heavy machines that are very efficient but have some disadvantages. They can harvest the crop only once at the end of the growing season. Since cotton bolls do not mature uniformly, the early opened bolls expose their fiber to weather for extended periods, reducing lint quality. In addition, the machines can also compact the soil, reducing water and fertilizer usage efficiencies and crop yields in the following years. Robotic cotton harvesting offers a promising solution to these issues. Smaller robotic harvesters could go to the field multiple times during the season to pick cotton bolls as soon as they open. Such harvesters could be lightweight, minimizing the risk of soil compaction. This dissertation research includes designing an end-effector for robotic cotton harvesting, designing a robotic platform and integrating the custom-designed end-effector, and developing multiple manipulation control algorithms. The robotic platform has a 3-DOF (degrees of freedom) manipulator and a ZED 2i stereo camera. The robot was tested under lab and field conditions to evaluate its performance in object detection, localization, and picking. The tests proved that manipulating the arm while picking a boll increased the picking ratio – the weight of the picked seed cotton over the whole weight of the seed cotton that the robot attempted to pick – by up to 23%. However, it increased the cycle time. Therefore, the control algorithm was improved to a closed-loop system to touch just the unpicked areas of a boll. The best control algorithm, i.e., I-FMW (improved-feedback-based manipulation while picking), could achieve a 72.0% picking ratio with a cycle time of 8.8 s during lab tests. The field tests were conducted to find the contribution of three main systems (detection, localization, and picking) to the losses. The tests showed that detection, localization, and picking subsystems could achieve performance of 78.1%, 70.0%, and 83.1% respectively. Therefore, detection and localization systems must be improved. Utilizing better sensors, modifying detection and localization algorithms, adding the boll orientation information, and controlling illumination conditions as much as possible would improve the picking performance and make the robot a step closer to a commercial product.

IL-23 is an essential mediator of chronic intestinal inflammation in experimental models of colitis. Polymorphisms in the IL23R locus are associated with IBD susceptibility in humans. The biological activity of IL-23 has been linked to Th17 cells but little is known about the cellular and molecular mechanism by which IL-23 drives intestinal inflammation. The work presented herein has identified that direct IL-23 signalling into CD4+ T cells was not only required for the accumulation of Th17 cells in the intestine but also modulated their phenotype. Through direct cell intrinsic effects on T cells, IL-23 drove the emergence of an IL-17A+IFN-γ+ population of T cells that co-expressed RORγ and T-bet. Interestingly, we found that expression of RORγ but not T-bet by T cells was required for the development of intestinal inflammation. Furthermore, colitis induced by T-bet deficient T cells was dependent on IL-17A, and showed a unique inflammatory phenotype, thus demonstrating that pathogenic intestinal Th17 responses can develop independently of T-bet. In addition, using transcriptional profiling we identified a core set of genes that is regulated by direct cell-intrinsic IL-23 signals into intestinal CD4+ T cells. This revealed a previously unrecognised role for IL-23 in suppressing Th2 associated genes, such as GATA3 and IL-33R. Functional experiments demonstrated that expression of GATA3 in CD4+ T cells limited their colitogenic potential, suggesting that IL-23-mediated inhibition of GATA3 might contribute to the development of intestinal inflammation. Finally, we described a novel function for IL-33 as a factor that promotes Foxp3+ iTreg differentiation in vitro and in vivo through direct effects on T cells. This activity of IL-33 was inhibited in the presence of IL-23, providing a mechanistic link for the known role of IL-23 in restraining iTreg generation. Collectively, these data suggest that IL-23 promotes acquisition of a pathogenic effector T cell phenotype through multiple mechanisms. This indicates that therapeutic blockade of IL-23 is likely to reduce pro-inflammatory mediators while also facilitating the expansion of regulatory pathways that might help to re-establish intestinal homeostasis.

Die Unfolded Protein Response (UPR) ist ein in Eukaryoten konservierter Signalweg, der durch Akkumulation von un-/fehlgefalteten Proteinen im endoplasmatischen Retikulum (ER) aktiviert wird um die Proteinhomöostase zu gewährleisten. In <i>Saccharomyces cerevisiae</i> wird die UPR durch den ER-Stresssensor Ire1p und den bZIP Transkriptionsfaktor Hac1p, oder XBP1 in höheren Eukaryoten, reguliert. In dieser Arbeit konnten die Homologe der zentralen UPR-Regulatoren im biotrophen Pilz <i>Ustilago maydis</i> charakterisiert und die UPR als essenzieller Koordinator der pathogenen Entwicklung identifiziert werden. Die Komplementation der <i>∆HAC1</i> Mutante durch <i>cib1</i> (Homolog von <i>HAC1</i>) und umfassende Expressionsanalysen zeigten, dass die Regulationsmechanismen der UPR in <i>U. maydis</i> weitestgehend konserviert sind, das Spektrum der regulierten Zielgene jedoch sekretierte Virulenzfaktoren beinhaltet die für die pathogene Entwicklung notwendig sind. So konnten durch <i>in silico</i> Vorhersage möglicher Cib1 Bindestellen (UPRE) mit pit1/pit2 und tin1-1 drei bereits charakterisierte Effektorgene als direkt regulierte UPR-Zielgene identifiziert werden. Die gezielte Deletion des vorhergesagten UPREs führt zu einer Aufhebung der ER-Stress induzierten und Cib1 abhängigen Expression von pit2 und verringert die Virulenz signifikant. Darüber hinaus konnte gezeigt werden, dass eine funktionelle UPR sowohl notwendig für eine verstärkte Expression wie auch für die korrekte Prozessierung des Pit2-Effektors innerhalb des ERs ist. Im Gegensatz zur Bäckerhefe <i>S. cerevisiae</i> und den filamentösen Ascomyceten <i>Aspergillus niger</i> und <i>Trichoderma reseei</i> kodiert die ungespleißte XBP1 mRNA in höheren Eukaryoten für einen negativen Regulator der UPR. Mit den vorliegenden Untersuchungen in <i>U. maydis</i> konnte erstmals für niedere Eukaryoten gezeigt werden, dass die ungespleißte cib1 mRNA für einen negativen Regulator kodiert, der darüber hinaus eine bislang unbeschriebene und vermutlich konservierte Funktion in der Antwort auf ER-Stress besitzt. Die genaue Kontrolle der UPR-Aktivität ist Voraussetzung für die korrekte Ausführung der verschiedenen Schritte innerhalb der pathogenen Entwicklung von <i>U. maydis</i>. Während eine vorzeitige UPR-Aktivierung zur Inhibition des zur Pflanzeninfektion notwendigen filamentösen Wachstums führt, ist die gezielte Aktivierung der UPR nach erfolgreicher Penetration der Pflanzenoberfläche und ihre andauernde Aktivität während des Wachstums <i>in planta</i> notwendig für die pathogene Entwicklung. Die direkte Interaktion zwischen Cib1 und dem Entwicklungsregulator Clp1 während dieser Entwicklungsphase führt zur Stabilisierung von Clp1 und der Modulation der Cib1 abhängigen Genexpression. Auf diese Weise wird die Proliferation <i>in planta</i> ermöglicht und eine erhöhte ER-Stressresistenz vermittelt. Zusammenfassend zeigen die gewonnenen Ergebnisse, dass die UPR in <i>U. maydis</i> als Kontrollpunkt dient, um die zelluläre Physiologie, den Entwicklungsverlauf und die Sekretion von Effektoren aufeinander abzustimmen.

Le pouvoir pathogène des microorganismes repose sur leur capacité à manipuler des processus cellulaires de l'hôte à l'aide de protéines sécrétées dans le tissu végétal : les effecteurs. En plus de leur rôle primordial dans le pouvoir pathogène, les effecteurs sont centraux pour la résistance des plantes. La reconnaissance de certains d'entre eux par des récepteurs du système immunitaire végétal, nommées protéines de résistance (R), déclenche la résistance de la plante. Cette thèse a permis la caractérisation moléculaire d'AVR-CO39, un effecteur du champignon pathogène du riz Magnaporthe oryzae. Nous montrons qu'AVR-CO39 est transloqué dans le cytoplasme des cellules infectées par un mécanisme indépendant de facteurs fongiques et est reconnu dans ce même compartiment par le produit du locus R nommé Pi-CO39. La surexpression d'AVR-CO39 dans des plantes transgéniques révèle que cet effecteur influence des processus développementaux et physiologiques du riz. Un crible double hybride dans la levure a permis d'identifier 9 protéines du riz potentiellement ciblées par AVR-CO39. Une d'elles, nommée RGA5, confère la résistance Pi-CO39 avec une seconde protéine R du riz appelée RGA4. Nos résultats indiquent que RGA4 induit l'activation de la défense tandis que RGA5 agit comme récepteur de protéines Avr. En effet, RGA5 interagit physiquement avec AVR-CO39 et AVR-Pia, un autre effecteur de M. oryzae, via un domaine C-terminal homologue à des protéines de liaison au cuivre. Cette thèse a donc permis l'identification d'un nouveau domaine de reconnaissance de protéines Avr et le développement d'un modèle mécanistique pour le fonctionnement de paires de protéines R chez les plantes. / Pathogenic microorganisms secrete numerous proteins during infection into the plant tissue to manipulate host cellular processes. These proteins are called effectors and are central to pathogenicity. Certain effectors are recognized by receptors of the plant immune system called resistance (R) proteins and this recognition triggers plant resistance. The objective of the thesis was the molecular characterization of AVR-CO39, an effector of the rice blast fungus Magnaporthe oryzae. Localization studies indicate that AVR-CO39 is translocated into the cytoplasm of infected rice-cells by a mechanism independent of fungal factors and that it is recognized within this compartment by the product of the corresponding R locus Pi-CO39. Overexpression of AVR-CO39 in transgenic rice plants suggests that the effector influences plant physiology and development. Yeast two-hybrid screening identified 9 rice proteins potentially targeted by AVR-CO39. One of them, called RGA5, interacts with a second R protein, RGA4, to confer Pi-CO39 resistance. Our results suggest that RGA4 activates plant defense while RGA5 represses RGA4 function in the absence of effectors proteins and acts as an Avr receptor protein. Indeed, RGA5 physically interacts with AVR-CO39 and another M. oryzae effector named AVR-Pia through a previously undescribed C-terminal domain displaying homology to copper-binding proteins. Therefore, this work identified a new Avr recognition domain in R proteins and generated a new mechanistic model for the action of R protein pairs in plant resistance.

Melampsora larici-Populina est un champignon biotrophe qui infecte le peuplier et cause la maladie de la rouille foliaire, entraînant d'importants dégâts dans les peupleraies. Un des objectifs de l'UMR Interactions Arbres/Microorganismes est de caractériser les déterminants moléculaires de ce pathosystème. Au cours de cette thèse, des approches post-Génomiques ont permis de mener à bien quatre projets de recherche. Premièrement, l'analyse du transcriptome des temps précoces de l'interaction peuplier/M. larici-Populina a révélé un transporteur de sulfate de peuplier fortement induit par l'infection (chapitre II). Deuxièmement, l'analyse phylogénomique de la famille des thaumatin-Like proteins (TLP) a entre autres mis en évidence certains clades spécifiquement associés aux réponses aux stress chez le peuplier (chapitre III). Troisièmement, le gène codant la petite protéine sécrétée Risp de fonction inconnue est fortement induit lors des réponses de défense du peuplier et n'a pas d'homologue chez les autres plantes. La protéine recombinante est intrinsèquement désordonnée et présente une double activité de protéine antifongique envers M. larici-Populina et d'éliciteur endogène des réponses de défense chez le peuplier (chapitre IV et V). La combinaison de ces deux propriétés n'a jamais été rapportée chez une protéine de plante. Enfin, les gènes MlpP4.1 et MlpH1.1 de M. larici-Populina codent des petites protéines sécrétées riches en cystéines et de fonction inconnue, considérées comme des effecteurs candidats (chapitre VI). L'expression de MlpP4.1 et MlpH1.1 est très fortement induite lors de l'infection des feuilles de peupliers et des activités de virulence ont été observées chez Arabidopsis thaliana. Les analyses biochimique et structurale des protéines recombinantes sont en cours et ont déjà permis de démontrer la forte stabilité de MlpP4.1, probablement liée à la présence de plusieurs ponts disulfures. A l'aide des protéines recombinantes, plusieurs partenaires protéiques ont été identifiés chez les plantes permettant d'établir des hypothèses quant à leur rôle / Melampsora larici-Populina is a biotrophic fungus that infects poplar and causes the foliar rust disease, leading to severe damages in plantations. A major aim of the Tree- Microbe Interactions department is to characterize molecular determinants of the pathosystem. During this thesis, four research projects were achieved through post-Genomic approaches. First, transcriptome analysis of the early interaction between poplar and M. larici-Populina revealed a fungal-Induced host sulfate transporter (chapter II). Secondly, the phylogenomic analysis of the thaumatin-Like protein (TLP) family uncovered some clades specifically associated with stress responses in poplar (chapterIII). Thirdly, the gene encoding the small secreted protein of unknown function Risp is strongly induced during poplar defense reponses and has no homolog in other plants. The recombinant protein is intrinsically disordered and presents a dual activity as an antifungal protein against M. larici-Populina and as an endogenous elicitor of defense responses in poplar (chapter IV and V). The combination of both properties in a single protein has never been reported in plants. Finally, M. larici-Populina MlpP4.1 and MlpH1.1 genes encode cysteine-Rich small-Secreted proteins of unknown fonction, considered as candidate effectors (chapter VI). MlpP4.1 and MlpH1.1 expression is strongly induced during poplar leaf colonization, and virulence activities were observed in Arabidopsis thaliana. Biochemical and structural analyses of recombinant proteins are ongoing and already revealed the strong stability of MlpP4.1, likely due to the presence of several disulfide bridges. Several plant partners of the recombinant proteins were identified and have allowed for setting hypotheses about their role

In order to establish an extra-cellular infection the gram-negative bacteria Yersinia pseudotuberculosis uses a type III secretion system (T3SS) to translocate a set of anti-host effectors into eukaryotic cells. The toxins disrupt signalling pathways important for phagocytosis, cytokine production and cell survival. Secretion and translocation via this T3SS is strictly regulated on several levels. In this context, the function of YopE and LcrH during Yersinia infections has been analysed. YopE is an essential translocated effector that disrupts the actin cytoskeleton of infected eukaryotic cells, by inactivating small GTPases through its GTPase activating protein (GAP) activity. However, cytotoxicity can be uncoupled from in vitro GAP activity towards the RhoA, Rac1 and Cdc42 GTPases. Furthermore, in vivo studies of the YopE GAP activity revealed that only RhoA and Rac1 are targeted, but this is not a pre-requisite for Yersinia virulence. Hence, YopE must target one or more additional GTPases to cause disease in mice. YopE was the only Yersinia effector that blocks LDH release from infected cells. Moreover, translocated YopE could regulate the level of subsequent effector translocation by a mechanism that involved the YopE GAP function and another T3S component, YopK. Loss of translocation control elevated total T3S gene expression in the presence of eukaryotic cells. This indicated the existence of a regulatory loop for feedback control of T3S gene expression in the bacteria that originates from the interior of the eukaryotic cell after effector translocation is completed. This might represent the true virulence function of YopE. Exoenzyme S (ExoS) of Pseudomonas aeruginosa has a YopE-like GAP domain with similar activity towards RhoA, Rac1 and Cdc42. However, ExoS is unable to complement hyper-translocation resulting from loss of YopE. This indicates a unique function for YopE in translocation control in Yersinia that might be dependent on correct intracellular localisation. It follows that the Membrane Localisation Domain in YopE was important for translocation control, but dispensable for cytotoxicity and blockage of LDH release. YopD and its cognate chaperone LcrH are negative regulatory elements of the T3S regulon and together with YopB, are involved in the effector translocation process. Randomly generated point mutants in LcrH specifically effected stability and secretion of both the YopB and YopD substrates in vitro and prevented their apparent insertion as translocon pores in the membranes of infected cells. Yet, these mutants still produced stable substrates in the presence of eukaryotic cells and most could mediate at least partial effector translocation. Thus, only minimal amounts of the YopB and YopD translocator proteins are needed for translocation and the LcrH chaperone may regulate this process from inside the bacteria.

Thy-1 is a glycosylphosphatidylinositol-anchored protein that is expressed on murine T lymphocytes and is involved in T cell-mediated immune responses. In the presence of costimulatory signals, monoclonal antibody (mAb)-induced signaling through Thy-1 is associated with hallmarks of T cell activation, including IL-2 production and T cell proliferation. Thy-1-induced signaling promotes cytotoxic effector molecule expression, but is unable to trigger delivery of the lethal hit to target cells, suggesting that Thy-1 provides an incomplete T cell receptor (TcR)-like signal. However, the effect of Thy-1 signaling on cytokine production and the development of T helper (Th) cell phenotypes (Th1, Th2, Th17) remains unclear. The purpose of this work was to further our understanding of Thy-1-mediated signal transduction and the role that Thy-1 plays in the development of effector T cell responses. I found that, in the context of costimulatory signals, anti-Thy-1 mAb induced significantly less IL-2 production, CD25 expression and T cell proliferation than anti-TcR? mAb. Several key signaling molecules, including protein tyrosine kinases, zeta chain-associated protein-70 and extracellular signal-regulated kinase were activated with delayed kinetics during Thy-1-mediated T cell activation. The delayed signaling kinetics resulted in the delayed acquisition of cytotoxic effector function and also delayed delivery of the lethal hit to target cells. Interestingly, Thy-1-mediated signaling induced significantly more IL-17 and IL-4 synthesis and less IFN-? synthesis in comparison to TcR-mediated signaling. Moreover, Thy-1-activated CD4+ T cells produced high levels of IL-17 and IL-4 but minimal IFN? when restimulated with anti-Thy-1 mAb or anti-TcR? mAb with or without costimulatory signals. The unique ability of Thy-1 signaling to induce IL-17 production correlated with the expression of the Th17 lineage-specific transcription factor, retinoic orphan receptor gamma t. These observations show that Thy-1 signaling differs from TcR signaling in its ability to induce Th cell cytokines. Taken together, my findings show that Thy-1 signaling can provide the full TcR-like signal required for both the differentiation and triggering of Th cells and cytotoxic T lymphocytes, albeit with delayed kinetics in comparison to TcR signaling. They also suggest that Thy-1 signaling may be important in the development of Th2 and Th17 responses.

Traditionally, language was proposed to be mediated by various left hemisphere perisylvian structures and the associated role of the motor cortices was limited to tasks such as articulation. Recent theoretical models have proposed that effector specific words with motor related meaning are represented somatotopically on the primary motor (Brodmann’s Area 4) and premotor (Brodmann’s Area 6) cortices. For example, it has been reported that when verbs associated with the hand (e.g., pick) are processed, the primary and premotor areas involved with moving the hand are engaged. However, fundamental methodological problems exist within the reported research. This thesis aimed to address and correct the inconsistencies and methodological limitations within the existing literature to provide more conclusive evidence regarding the involvement of the primary and premotor cortices in processing verbs with motor related meaning. This thesis also aimed to investigate whether the names of effectors (nouns) also involve processing by the motor cortices, either generally or somatotopically. Three behavioural dual task experiments and one fMRI experiment were conducted. Results indicated no evidence of somatotopically organised overlapping activation in the primary or premotor cortex between the various semantic categories of words and related effector movements. However, in the fMRI experiment, motor related verbs in general yielded significant overlapping activity between reading all effector related verbs and moving all effectors in the pre-supplementary motor area of the premotor cortex. These findings indicate that an embodied language involving somatotopic representations of effector specific verbs on the primary or premotor cortex is unlikely to be the case. Rather there appears to be a more general representation of effector related verbs in a more cognitive than motor area of the premotor cortex. The findings of this thesis are consistent a wealth of evidence supporting the motor cortices being generally associated with motor related language and with the idea that semantic representations are distributed throughout the brain according to the embodied cognitive framework, rather than being localised to amodal regions that process all words.