Nitric oxide (NO) and S-nitrosothiols (SNOs) are widespread signalling molecules that regulate immunity in animals and plants (Wendehenne et al., 2001). Previously, we have reported that Arabidopsis thaliana S-nitrosoglutathione reductase, (AtGSNOR1) modulates the extent of total cellular SNO formation, which subsequently regulates multiple modes of plant disease resistance (Feechan et al., 2005). Loss-of-function mutations in AtGSNOR1, leading to increased SNO levels, have recently been shown to result in S-nitrosylation of the key defence regulators NPR1 and AtSABP3, blunting their activity and subsequently leading to increased pathogen susceptibility (Tada et al., 2008; Wang et al., 2009). Thus, inhibiting AtGSNOR1 function leading to increased SNOs, would potentially provide a good strategy for bacterial effector proteins, delivered by the type III secretion system (TTSS), to promote infection. AtGSNOR1 is constitutively expressed in all organs in Arabidopsis and its expression is induced by wounding stress avirulent and non-host pathogen. Using gas phase chemiluminescence, we show that infection with Pseudomonas syringae pv. tomato strain DC3000 (PstDC3000) resulted in increase SNO levels which is TTSS. At the same time, RT-PCR and GUS analysis indicated that AtGSNOR1 expression was transiently suppressed by PstDC3000 which is also TTSS-dependent. Therefore, PstDC3000 infection suppresses denitrosylase function of AtGSNOR1 to increase SNO levels and this virulence effect is delivered by at least one of the effector protein secreted through TTSS. Several putative cis-acting elements were identified in AtGSNOR1 promoter through deletion analysis including GT-box, W-box and MYB/MYC binding motif. These elements comprise of positive and negative regulators which are critical for the induction and suppression of AtGSNOR1 in response to pathogen infection. A few transgenic plants expressing effector proteins were selected and tested for their suppressive effect on AtGSNOR1 expression during PstDC3000 infection. HopAM1 effector proteins showed the ability to suppress AtGSNOR1 when expressed in planta.

Die Infektion von Arabidopsis thaliana Col-0 Pflanzen mit dem Verticillium longisporum Isolat VL43 und dem Verticillium dahliae Isolat VdJR2 resultiert in klar zu unterscheidenden Krankheitssymptomen, wie die verfrühte Seneszenz (early senescence) bzw. die Welke (wilting). Um herauszustellen ob VL43- und VdJR2-ähnliche Infektionssymptome Spezies-spezifische Merkmale sind, wurde eine Verticillium Stammkollektion, bestehend aus 21 amphihaploiden V. longisporum und 46 haploiden V. dahliae Isolaten systematisch analysiert und kategorisiert in Bezug auf die Induktion von Krankheitssymptomen auf den A. thaliana Ökotyp Col-0. Die Analysen ließen die Klassifizierung von drei unterschiedlichen Interaktionsklassen zu: „early senescence”, „wilting” und „asymptomatic”. Für die detaillierte Charakterisierung der Interaktionsklassen „early senescence” und „wilting” wurden Verticillium Isolate gewählt, die auf robuste Weise diese Infektionssymptome induzieren. Diese wurden untereinander in Bezug auf ihre Fähigkeit innerhalb der Pflanze zu proliferieren und entwicklungsorientierte Veränderungen innerhalb der Blattvaskulatur der Pflanze zu induzieren verglichen. Die Analysen zeigten, dass Isolate der „wilting“ Interaktionsklasse eine erhöhte Lignifizierung der Xylemzellwände in Blättern auslösen. Im Gegensatz dazu induziert die Infektion mit Isolaten der „early senescence“ Interaktionsklasse die verfrühte Seneszenz der Pflanze, sowie eine entwicklungsorientierte Umprogrammierung der Blattvaskulatur. Interessanterweise stellen entwicklungsorientierte Veränderungen der Blattvaskulatur eine generelle Antwort von Wirtspflanzen auf diese Verticillium Interaktionsklasse dar, da dieses Symptom ebenso in Nicotiana benthamiana, eine Solanaceae Spezies, induziert wird. Somit wurde postuliert, dass Isolate der Interaktionsklasse „early senescence“ spezielle pilzliche Effektormoleküle besitzen, die diese Infektionssymptome auslösen. Um potentielle pilzliche Effektormoleküle zu identifizieren, die spezifisch für die „early senescence” Interaktionsklasse sind, wurden vergleichende Genomsequenzanalysen mit haploiden V. dahliae Isolaten der drei Interaktionsklassen durchgeführt. Die Daten deuteten auf Sequenzen hin, die in der „early senescence” Interaktionsklasse existieren, aber nicht in den Genomen von Isolaten der „wilting” und „asymptomatic” Interaktionsklassen vorkommen und somit möglicherweise Gene für pilzliche Effektoren beherbergen, die in der Symptomentwicklung der verfrühten Seneszenz eine Rolle spielen. Darüberhinaus wurden vergleichende in planta Transkriptomanalysen mit V. dahliae Isolaten durchgeführt, die Welke oder verfrühte Seneszenz auslösen. Hierbei wurden pilzliche Gene identifiziert, die im Vergleich zur „wilting“ Interaktionsklasse eine erhöhte Transkriptmenge in der Interaktionsklasse “early senescence” aufwiesen. Aus dieser Gruppe von Genen wurden Effektorkandidaten ausgewählt. Bemerkenswerterweise war unter den hochregulierten Effektormolekülen eine Ligninase, CEL, die möglicherweise Lignin hydrolysiert und somit einen Einfluss auf die Unterschiede der Lignifizierungsmenge von Xylemzellwänden hat. Die Gene zweier Kandidateneffektoren, CEL und CE1, wurden bezüglich ihrer Promotersequenzen zwischen den Isolaten der zwei Interaktionsklassen untersucht. Nennenswerterweise wurden keine eindeutigen Sequenzunterschiede in den Promoterregionen der drei Kandidatengene gefunden, die ihre differentielle Expression zwischen der „wilting“ und „early senescence“ Interaktionsklasse erklären würden. Somit wurde angenommen, dass die Expression dieser Gene epigenetisch kontrolliert wird.

Effector proteins are exported to the interior of host cells by numerous plant pathogens. Effector proteins have been well characterized in bacteria. However, the mechanisms through which these effectors promote virulence are largely unknown. Bioinformatic analysis of genome sequences from oomycete pathogens Phytophthora sojae, P. ramorum, P. infestans and Hyaloperonospora arabidopsidis (Hpa) have led to the identification of a large number of candidate effector genes. These effector genes have characteristic motifs (signal peptide, RxLR and dEER) that target the effectors into plant cells. Although these effector genes are very diverse, certain genes are conserved between P. sojae and H. arabidopsidis, suggesting that they play important roles in pathogenicity. The goal of my first project was to characterize a pair of conserved effector candidates from Hpa and P. sojae. We hypothesized that these effectors have important conserved roles with regard to infection. We found that the Hpa effector was expressed early during the course of infection of Arabidopsis and triggered an ecotype-specific defense response in Arabidopsis, suggesting that it was recognized by host surveillance proteins. Both the effectors from Hpa and P. sojae respectively could suppress immunity triggered by pathogen associated molecular patterns (PTI) and by effectors (ETI) in planta. They also enhanced bacterial virulence in Arabidopsis when delivered by the Type III secretion system. Similar results were seen with experiments with transgenic Arabidopsis expressing the effectors. My second project showed that a different Hpa effector protein, HaRxL10, targets the Jasmonate-Zim Domain (JAZ) proteins that repressed responses to the phytohormone jasmonic acid (JA). This manipulation activates a regulatory cascade that reduces accumulation of a second phytohormone, salicylic acid (SA) and thereby attenuates immunity. This virulence mechanism is functionally equivalent to but mechanistically distinct from activation of JA-SA crosstalk by the bacterial JA mimic coronatine. These results reveal a new mechanism underpinning oomycete virulence and demonstrate that the JA-SA crosstalk is an Achilles\' heel that is manipulated by unrelated pathogens through distinct mechanisms. / Ph. D.

Receptor tyrosine kinase (RTK) inhibitors are emerging as an effective therapeutic option for treatment of breast cancer patients overexpressing particular RTKs. However, more patients may benefit from an inhibitor targeting a common effector protein downstream several RTKs. The presented studies herein identify c-Jun N-Terminal Kinase 2 (JNK2), a kinase downstream multiple RTKs, as a novel target to effectively inhibit Phosphatidylinositol 3-kinase/AKT activation and metastasis. Knockdown of JNK2 in the highly metastatic 4T1.2 mammary cancer cells significantly decreased growth factor induced invasion in Boyden chambers, orthotopic tumor growth, and metastatic lesions in lungs and bone. Intra-cardiac introduction of cancer cells is utilized to specifically study the later steps in the metastatic cascade including travel of disseminated cancer cells to a secondary location. Thus, earlier steps such as the process of acquiring a malignant phenotype leading to escape from the primary tumor are bypassed. Survival was prolonged in mice receiving intra-cardiac injection of cells deficient of JNK2 either in the host or in the tumor cells, suggesting a potential role for JNK2 as a therapeutic target for advanced stage breast cancer patients. Using siRNA and inhibitors against Src and PI3K, we determined that JNK2 activity is dependent on Src and PI3K, positioning JNK2 downstream of two critical factors involved in tumor progression. Microarray analysis of JNK2 deficient tumors revealed that JNK2 positively regulates the adaptor protein Grb2 associated binding protein 2 (Gab2). Knockdown of Gab2 in 4T1.2 cells resulted in decreased tumor growth and a trend for decreased lung metastasis. In vitro, stimulation of 4T1.2 shJNK2 or 4T1.2 shGab2 cells with HGF, heregulin, or insulin resulted in impaired AKT activation, suggesting involvement of Gab2 and JNK2 in multiple RTK signaling pathways. Understanding of the intricate mechanisms involved in RTK signal transduction can contribute to drug design geared towards more effective targets, namely JNK2. The secondary goal of this research was to decipher the individual roles of JNK2 and JNK1 in metastatic breast cancer. Survival was significantly shortened in mice injected intra-cardiac with 4T1.2 shJNK1 cells. In congruence, serum Cathepsin K levels were increased and bone lesions observed were higher in mice injected with shJNK1 expressing tumor cells compared to mice injected with control cells. In sharp contrast, jnk1-/- mice displayed dramatically increased survival and fewer bone lesions upon intra-cardiac injections of 4T1.2 cells. Collectively, these data suggest cell and isoform specific roles for JNKs. / text

<p><i>Agrobacterium tumefaciens </i>transfers virulence effector proteins to infected host plants to facilitate the transfer and trafficking of a piece of its tumor inducing (Ti) plasmid, (T-[transfer] DNA), into and through plant cells.T-DNA integrates into the host genome where it uses the host’s gene expression machinery to express transgenes. Scientists have used this process to insert beneficial genes into plants by replacing native T-DNA in the bacteria with engineered T-DNA, making <i>Agrobacterium</i>-mediated transformation the preferred method for crop genetic engineering. In spite of its wide-spread use in research and agriculture, we still do not have a complete understanding of the transformation process. Consequently, many important crop species remain highly resistant to transformation. One of my lab’s major goals is to define the molecular interactions between <i>Agrobacterium</i> and its host plants which mediate transformation. I study the role of the <i>Agrobacterium</i> effector protein, VirE2, which is important for plant transformation. VirE2 likely coats the transferred DNA (T-DNA) after it enters the plant cell and protects it from degradation. VIP1 is a host transcription factor that interacts with VirE2 and is involved in activating plant defense responses. VIP1 localizes to both the cytoplasm and the nucleus.Under stress, VIP1 localizes to the nucleus where it activates expression of defense response genes.This observation led to the model that T-DNA-bound VirE2 binds VIP1 and uses VIP1 nuclear localization to deliver T-DNA into the nucleus (the “Trojan Horse” model). In contrast to this model, our lab has obtained data showing that VirE2 holds at least a portion of the VIP1 pool outside the nucleus. We also showed that VIP1 and its homologs are not necessary for transformation. VirE2 interacts with several host proteins in addition to VIP1, and these interactions could lead to changes in host gene expression and protein levels, possibly facilitating transformation. We investigated this model by placing VirE2 under the control of an inducible promoter in <i>Arabidopsis</i> and performing RNA-seq and proteomics under non-induced and induced conditions, and in the presence of <i>Agrobacterium</i> to determine its individual effect on plant RNA and protein levels during infection. Some genes differentially expressed after VirE2 induction are known to be important for transformation. Knockout mutant lines of some VirE2 differentially expressed genes showed altered transformation phenotypes. Protein levels of genes known to be important for transformation were also increased in response to VirE2 induction, and overexpression of some of these genes resulted in increased transformation susceptibility. We therefore conclude that VirE2 modulates both plant RNA and protein levels to facilitate transformation.</p>

O cancro cítrico é considerado na atualidade uma das doenças mais perigosas e prejudiciais à citricultura brasileira e mundial, devido aos danos causados na produção e qualidade dos frutos, sendo a Xanthomonas axonopodis pv. citri (Xac) a bactéria fitopatogênica responsável por tais prejuízos. Nosso laboratório iniciou estudos de identificação e análise funcional das interações proteína-proteína de Xac envolvendo sistemas importantes para sua patogenicidade (Alegria et. al., 2004). Nosso objetivo principal foi o estudo funcional e fisiológico de interações já identificadas entre proteínas do sistema de secreção do tipo III (T3SS) da Xac. O foco de nossa pesquisa foi tentar desvendar a importância biológica, na patogenicidade de Xac, das interações proteína-proteína: HrpB2-HrcU; HpaA-HpaB-HrcV; HrpD6-HrpB1- HrpW. Com este intuito clonamos, expressamos e purificamos as proteínas recombinantes. Produzimos soros policlonais específicos contra cada uma das proteínas citadas acima. Estudamos a interação entre as proteínas in vitro por meio de técnicas como Far-Western Blot, Pull Down, fluorescência e dicroísmo circular. Outro enfoque do nosso trabalho foi monitorar a contribuição individual destas proteínas no desenvolvimento da doença in planta. Para isso produzimos cepas de Xac mutantes para os genes hrpB2, hrcU, hpaA, hpaB, hrpB1 e hrpG. Os nocautes não polares foram infiltrados em plantas de laranja pêra, assim como também as cepas de complementação correspondentes, e assim foi testada a habilidade de desenvolver o cancro cítrico e/ou reverter os sintomas da doença. Também foi monitorada a capacidade de multiplicação e sobrevida in planta das cepas Xac &#916;hrpB2, &#916;hrcU e &#916;hpaB, assim como a secreção das proteínas HrpB2 e HpaA pelo T3SS de Xac. Estudamos com mais detalhe a possível função de HrpB2 no T3SS de Xac, desenvolvendo experimentos para determinar a região da proteína imprescindível para sua função permanecer inalterada. Realizamos mutações sítio dirigidas, a fim de introduzir códons de terminação em diferentes regiões da proteína e testar a habilidade desses fragmentos de reverter os sintomas da doença na planta. Monitoramos a capacidade de proteínas mutantes de reverter fenótipos de patogenicidade em citrus, ausentes na cepa Xac &#916;hrpB2 e revertidos na cepa de complementação Xac &#916;hrpB2+pUFR047_hrpB2. Desta maneira, determinamos que os últimos seis aminoácidos de HrpB2 estão envolvidos no desenvolvimento da/s função/ões em Xac. / Citrus canker, caused by the bacterial pathogen Xanthomonas axonopodis pv citri (Xac), is a disease with significant economic consequences for the Brazilian and global citrus industry due to reductions in production and fruit quality. Our laboratory has initiated studies for the identification and functional analysis of protein-protein interactions involving Xac systems involved in pathogenicity (Alegria et. al., 2004). One objective has been to study functional and physiological interactions between proteins that make up the Xac Type III secretion system (T3SS). The focus of the present study is to unravel the biological significance in Xac pathogenicity of the following previously identified protein-protein interactions: HrpB2-HrcU; HpaA-HpaBHrcV; HrpD6-HrpB1-HrpW. With therefore cloned, expressed and purified the above-mentioned recombinant proteins. Specific polyclonal serum were produced and interactions between the proteins were studied in vitro using a variety of methods, including Far-Western Blot, Pull Down, fluorescence and circular dichroism. To monitor the individual contribution of these proteins in disease development in planta, we produced mutant Xac strains in which the hrpB2, hrcU, hpaA, hpaB, hrpB1 and hrpG genes were disrupted. The nonpolar knockouts as well as the corresponding complementation strains were infiltrated into Citrus sensensis plants and the development of citrus canker symtoms and bacterial proliferation in planta was evaluated. We also evaluated the T3SS-dependent secretion of proteins HpaA and HrpB2 by these Xac mutant strains. Structure-function relationships of the HrpB2 protein were studied in more detail. We developed experiments to determine the region of the protein essential for its function. We produced a series of hrpB2 mutants which were used to complement the hrpB2 knockout strain and evaluated their abilities to reverse the symptoms of the disease in the plant. The results demonstrate that the last six amino acids HrpB2 are important for its function in the development of disease symptoms by Xac.

O cancro cítrico é considerado na atualidade uma das doenças mais perigosas e prejudiciais à citricultura brasileira e mundial, devido aos danos causados na produção e qualidade dos frutos, sendo a Xanthomonas axonopodis pv. citri (Xac) a bactéria fitopatogênica responsável por tais prejuízos. Nosso laboratório iniciou estudos de identificação e análise funcional das interações proteína-proteína de Xac envolvendo sistemas importantes para sua patogenicidade (Alegria et. al., 2004). Nosso objetivo principal foi o estudo funcional e fisiológico de interações já identificadas entre proteínas do sistema de secreção do tipo III (T3SS) da Xac. O foco de nossa pesquisa foi tentar desvendar a importância biológica, na patogenicidade de Xac, das interações proteína-proteína: HrpB2-HrcU; HpaA-HpaB-HrcV; HrpD6-HrpB1- HrpW. Com este intuito clonamos, expressamos e purificamos as proteínas recombinantes. Produzimos soros policlonais específicos contra cada uma das proteínas citadas acima. Estudamos a interação entre as proteínas in vitro por meio de técnicas como Far-Western Blot, Pull Down, fluorescência e dicroísmo circular. Outro enfoque do nosso trabalho foi monitorar a contribuição individual destas proteínas no desenvolvimento da doença in planta. Para isso produzimos cepas de Xac mutantes para os genes hrpB2, hrcU, hpaA, hpaB, hrpB1 e hrpG. Os nocautes não polares foram infiltrados em plantas de laranja pêra, assim como também as cepas de complementação correspondentes, e assim foi testada a habilidade de desenvolver o cancro cítrico e/ou reverter os sintomas da doença. Também foi monitorada a capacidade de multiplicação e sobrevida in planta das cepas Xac &#916;hrpB2, &#916;hrcU e &#916;hpaB, assim como a secreção das proteínas HrpB2 e HpaA pelo T3SS de Xac. Estudamos com mais detalhe a possível função de HrpB2 no T3SS de Xac, desenvolvendo experimentos para determinar a região da proteína imprescindível para sua função permanecer inalterada. Realizamos mutações sítio dirigidas, a fim de introduzir códons de terminação em diferentes regiões da proteína e testar a habilidade desses fragmentos de reverter os sintomas da doença na planta. Monitoramos a capacidade de proteínas mutantes de reverter fenótipos de patogenicidade em citrus, ausentes na cepa Xac &#916;hrpB2 e revertidos na cepa de complementação Xac &#916;hrpB2+pUFR047_hrpB2. Desta maneira, determinamos que os últimos seis aminoácidos de HrpB2 estão envolvidos no desenvolvimento da/s função/ões em Xac. / Citrus canker, caused by the bacterial pathogen Xanthomonas axonopodis pv citri (Xac), is a disease with significant economic consequences for the Brazilian and global citrus industry due to reductions in production and fruit quality. Our laboratory has initiated studies for the identification and functional analysis of protein-protein interactions involving Xac systems involved in pathogenicity (Alegria et. al., 2004). One objective has been to study functional and physiological interactions between proteins that make up the Xac Type III secretion system (T3SS). The focus of the present study is to unravel the biological significance in Xac pathogenicity of the following previously identified protein-protein interactions: HrpB2-HrcU; HpaA-HpaBHrcV; HrpD6-HrpB1-HrpW. With therefore cloned, expressed and purified the above-mentioned recombinant proteins. Specific polyclonal serum were produced and interactions between the proteins were studied in vitro using a variety of methods, including Far-Western Blot, Pull Down, fluorescence and circular dichroism. To monitor the individual contribution of these proteins in disease development in planta, we produced mutant Xac strains in which the hrpB2, hrcU, hpaA, hpaB, hrpB1 and hrpG genes were disrupted. The nonpolar knockouts as well as the corresponding complementation strains were infiltrated into Citrus sensensis plants and the development of citrus canker symtoms and bacterial proliferation in planta was evaluated. We also evaluated the T3SS-dependent secretion of proteins HpaA and HrpB2 by these Xac mutant strains. Structure-function relationships of the HrpB2 protein were studied in more detail. We developed experiments to determine the region of the protein essential for its function. We produced a series of hrpB2 mutants which were used to complement the hrpB2 knockout strain and evaluated their abilities to reverse the symptoms of the disease in the plant. The results demonstrate that the last six amino acids HrpB2 are important for its function in the development of disease symptoms by Xac.

Salmonella enterica serovar Typhimurium (S. Typhimurium) is a Gram-negative facultative anaerobe that induces severe inflammation resulting in gastroenteritis. In the case of S. Typhimurium infection, induction of an inflammatory response has been linked to its primary virulence mechanism, the type III secretion system (T3SS). The T3SS secretes protein effectors that exploit the host’s cell biology to facilitate bacterial entry and intracellular survival, and to modulate the host immune response. One such effector, SifA, is a bi-functional T3SS effector protein that plays an important role in Salmonella virulence. The N-terminal domain of SifA binds SifA-Kinesin-Interacting-Protein (SKIP), and via an interaction with kinesin, forms tubular membrane extensions called Sif filaments (Sifs) that emanate from the Salmonella Containing Vacuole (SCV). The C-terminal domain of SifA harbors a WxxxE motif that functions to mimic active host cell GTPases. Taken together, SifA functions in inducing endosomal tubulation in order to maintain the integrity of the SCV and promote bacterial dissemination. Since SifA performs multiple, unrelated functions, the objective of this study was to determine how each functional domain of SifA becomes processed. In the present study, we demonstrate that a linker region containing a caspase-3 cleavage motif separates the two functional domains of SifA. To test the hypothesis that processing of SifA by caspase-3 at this particular site is required for function and proper localization of the effector protein domains, we developed two tracking methods to analyze the intracellular localization of SifA. We first adapted a fluorescent tag called phiLOV that allowed for T3SS mediated delivery of SifA and observation of its intracellular colocalization with caspase-3. Additionally, we created a dual-tagging strategy that permitted tracking of each of the SifA functional domains following caspase-3 cleavage to different subcellular locations. The results of this study reveal that caspase-3 cleavage of SifA is required for the proper localization of functional domains and bacterial dissemination. Considering the importance of these events in Salmonella pathogenesis, we conclude that caspase-3 cleavage of effector proteins is a more broadly applicable effector processing mechanism utilized by Salmonella to invade and persist during infection.

<p>The actin cytoskeleton is involved in many essential cellular events such as mitosis, cell migration, control of epithelial barrier function, and adherence of immune cells. Given the essential roles of the actin cytoskeleton, it is not surprising that it is a common target for bacterial virulence factors. <em>Legionella pneumophila</em>, the causative agent of Legionnaire’s pneumonia, establishes a replicative compartment using effectors secreted by its Dot/Icm secretion system. At least four Dot/Icm effectors, VipA, Ceg14, LegK2 and RavK have been shown to modulate the host actin cytoskeleton. Here, we identified RavJ (lpg0944) as an additional effector that interferes with the actin cytoskeleton in mammalian cells. We demonstrated that RavJ is a transglutaminase that functions to induce crosslink between actin and members of the Motin protein family, leading to inhibition of the binding between actin and ADF/cofilin. We also found that LegL1 (lpg0945) is a metaeffector of RavJ, which suppresses the transglutaminase activity of RavJ by blocking its enzymatic domain. </p>

No description available.