Survival of Escherichia coli O157:H7 in fermented dairy products has been attributed to acid-adaptation. Acid-adaptation enhances resistance to extreme acid pH and confers cross-protection to heterologous stresses. This study sought to investigate whether acid-adaptation confers cross-protection to lactoperoxidase (LP) system and lactic acid in Tryptone Soy Broth (TSB), and to determine the mechanism of cross-protection. Subsequently, cross-protection of acid-adapted E. coli O157:H7 to the combination of LP activation, heat and lactic acid treatments was determined in fresh goat milk. Finally, the effect of LP activation and E. coli O157:H7 survival on acid production during fermentation of traditional and commercial goat milk was investigated with indigenous cultures and single strain lactic acid bacteria (LAB) respectively. Acid-adapted E. coli O157:H7 strain UP10 showed high acid-resistance at pH levels 4.0 and 5.0 for up to 24 h in TSB at 25°C compared to non-adapted E. coli O157:H7. Acid-adaptation also conferred cross-protection against activated LP system and lactic acid challenge at pH 4.0 and 5.0. Results from fatty acid analysis and quantitative real time Polymerase Chain Reaction (RT-PCR) indicated that sigma S (RpoS)-independent systems were responsible for acid-resistance and cross-protection in TSB. Increase in the saturation of fatty acids, increased expression of outer membrane porin, OmpC, and activation of the glutamate decarboxylase system contributed to acid-resistance and cross-protection. Growth of acid-adapted E. coli O157:H7 strains UP10 and 1062 were inhibited in fresh goat milk compared to the non-adapted cells. Nonetheless, strain 1062 showed better growth and resistance to activated LP in fresh goat milk compared to strain UP10. LP activation alone did not significantly inhibit either acid-adapted or non-adapted E. coli O157:H7, but it sensitized E. coli O157:H7 cells to sub-lethal heat treatment at 55 and 60°C. The combination of heat treatment at 60°C, LP activation and lactic acid at pH 5.0 had a greater inhibitory effect on both acid-adapted and non-adapted E. coli O157:H7, but the acid-adapted strains displayed cross-protection against combined treatments. This indicates that non-adapted E. coli O157:H7 can survive a certain threshold of stresses unscathed. Below that threshold, acid-adaptation may be detrimental to survival. LP activation did not inhibit growth and acid production by single strain and indigenous LAB in the processing of commercial and traditional fermented goat milk products. LP activation however inhibited E. coli O157:H7 in both the commercial and traditional goat milk products although E. coli O157:H7 had become acid-adapted during the fermentation process. E. coli O157:H7 inhibition could be due to the combination of LP activation, low pH, fermentation time and antimicrobial compounds present in the milk or produced by the LAB during milk fermentation. Results from this study suggest that while acid-adaptation protects E. coli O157:H7 under harsh conditions, it can sensitize E. coli O157:H7 to sub-lethal stresses that does not require acid-adaptation for survival. On the other hand, non-adapted E. coli O157:H7 could become acid-adapted in food at mild acid pH which may enhance prolonged survival in such foods. / Thesis (PhD)--University of Pretoria, 2010. / Food Science / unrestricted

The theme of this thesis is to determine the aroma active compounds in fermented dairy products. These substances significantly influence the palatability of these dairy products. Five kinds of dairy products were analyzed. Two types of creamy yogurts, and three types of yoghurt milks were produced at the dairy Ekomilk Ltd. in Frydek - Mistek and four types of acidified milk, five kinds of creamy yogurts, two kefir milks and two clabbered milks come from production of the company Kunin, Inc. Ostrava - Martinov. The SPME extraction method was used for the determination of aromatics, subsequent analysis was performed using gas chromatography. Compounds contained in fermented milk products were identified and quantified on the basis of the measured standards. Total 39 compounds, including 16 alcohols, 7 acids, 6 aldehydes, 6 ketones and 4 esters were identified. Fermented dairy products were twice subjected to sensory evaluation by the ranking test and scale test. The assessors were chosen from students, postgraduate students and staff of faculty of chemistry BUT. Consumers evaluated very positively yogurts, yogurt drinks and acidified milks, while kefir milks and clabbered milks did not suit in some aspects.

The aim of the thesis was to monitor presence of probiotic microorganisms in representative fermented dairy products. Three samples of white yoghurt available in the market, in which the manufacturer declared presence of bifidobacteria, were chosen for determination of strains of Lactobacillus delbrueckii ssp. bulgaricus, Streptococcus salivarius ssp. thermophilus and the genus of Bifidobacterium. Bibliographic research deals with explanation of the wider context of probiotic microorganisms and the process of fermentation, fermented dairy products and in particular of yoghurt as one type of fermented dairy products. In the experimental part, the thesis focusses on evaluation of microbiological analyses and pH of selected yoghurts in relation to the samples and storage time. The results show that the number of live bacteria of Lactobacillus delbrueckii ssp. bulgaricus and Streptococcus salivarius ssp. thermophilus strains complied with the statutory requirements, while the number of bacteria of Bifidobacterium genus could have been affected by various factors which caused that according to the results of the work, certain samples lacked the sufficient numbers of these bacteria.

Les produits laitiers fermentés tels que les yaourts, les laits fermentés et les fromages frais, occupent une place importante dans l’économie française. La stabilité de ces produits et leurs chances d’exportation sont cependant limitées par de fréquentes altérations fongiques. De plus, l’augmentation des résistances de certains champignons aux conservateurs chimiques ainsi que la forte demande des consommateurs pour des produits dépourvus d’additifs poussent les industriels à en réduire l’ajout. Dans ce contexte, il est nécessaire de développer des alternatives innovantes, telle que la bio-conservation. Les bactéries lactiques, utilisées depuis des millénaires dans la fermentation de nombreux aliments, et généralement reconnues comme inoffensives pour la santé, sont potentiellement de bonnes candidates pour la bio-conservation. Dans le but d’obtenir une ou deux souches de bactéries lactiques antifongiques, capables d’être compétitives au sein de produits laitiers fermentés tels que le yaourt, une collection de bactéries lactiques antifongiques a d’abord été constituée. Pour cela, un criblage de colonies isolées de laits crus de vache, de chèvre et de brebis a été effectué sur une période d’une année. Ce criblage, ciblé contre 4 champignons communément retrouvés dans les produits laitiers contaminés, a abouti à l’isolement de 1235 colonies de bactéries lactiques antifongiques. Ceci a permis d’évaluer la biodiversité des bactéries lactiques antifongiques d’une part, et celle des champignons, d’autre part, dans ces échantillons de lait, afin d’observer une éventuelle corrélation entre la présence de champignons et l’expression des activités antifongiques. L’influence de l’origine du lait, de la période d’échantillonnage, du milieu d’isolement et du champignon ciblé, sur le pourcentage de colonies actives isolées a été mise en évidence. Parmi les champignons ciblés, Pénicillium expansum était le plus facilement inhibé, et la majorité des colonies ont été isolées durant la troisième période d’échantillonnage, majoritairement sur les milieux à base de MRS. Les laits de vache et de chèvre se sont révélés être des réservoirs de bactéries lactiques antifongiques, contrairement aux laits de brebis. La majorité des bactéries lactiques antifongiques isolées et identifiées appartenait au genre Lactobacillus, majoritairement du groupe Lb. casei. Onze isolats, dont 10 appartenant au groupe Lb. casei, ont été sélectionnés selon l’intensité de leur activité antifongique et leur spectre d’action sur milieu MRS. Certaines de leurs propriétés technologiques ont été caractérisées, en vue de leur utilisation comme cultures protectrices dans des produits laitiers fermentés. Leur activité antifongique a également été testée dans le lait et dans le yaourt, contre 6 contaminants fongiques communément responsables d’altérations dans les yaourts. Une souche, Lb. harbinensis K.V9.3.1Np, a révélé de fortes activités antifongiques dans le yaourt contre 6 cibles fongiques. Les études complémentaires effectuées ont permis de montrer que la variation de certains paramètres technologiques (présence ou absence de saccharose, temps de fermentation) n’avait pas d’influence sur l’activité antifongique de cette souche. La découverte du potentiel antifongique de Lb. harbinensis K.V9.3.1Np est innovante. Cette espèce, isolée pour la première fois en 2005 d’un produit fermenté végétal, n’avait encore jamais été décrite comme présentant des activités antimicrobiennes. Sa forte activité antifongique dans le yaourt fait de Lb. harbinensis K.V9.3.1Np un bon candidat pour la bioconservation de produit(s) laitier(s) fermenté(s). / Fermented dairy products such as yogurt, fermented milks and fresh cheeses are of great importance in the French economy. The stability of these products and export opportunities are however limited by frequent fungal spoilages. In addition, the increase of fungal resistances to Chemical preservatives and the strong consumer demand for products deprived of Chemical additives are pushing manufacturers to reduce the quantities of added Chemical preservatives in these products. In this context, it is necessary to develop alternatives to classical food preservation methods, such as biopreservation. Lactic acid bacteria (LAB), used for millennia for diverse food fermentations, and generally recognized as safe for human health, can potentially be used for biopreservation. In order to select 1 or 2 LAB strains with antifungal activity capable to compete in fermented dairy products such as yogurt, a collection of antifungal LAB was first created. This was done by screening colonies isolated from cow, goat and ewe raw milk samples over a one-year period. This screening step, targeted against 4 fungi found in contaminated dairy products, resulted in the isolation of 1235 antifungal colonies. The biodiversity of the isolated antifungal LAB was then determined along with that of the fungi found in the different raw milks, in order to observe a possible correlation between the presence of fungi and the expression of antifungal activities. The influence of milk origin, sampling period, isolation medium and targeted fungus on the percentage of isolated active colonies was highlighted and clearly showed that both cow and goat milks were reservoirs of antifungal LAB. Among the targeted fungi, P. expansum was more easily inhibited, and the majority of colonies were isolated during the third sampling period, mainly on MRS-based media. The majority of identified antifungal LAB belonged to the genus Lactobacillus, mainly to the Lb. casei group. Eleven isolates, including 10 belonging to the Lb. casei group, were selected from these lactobacilli, according to their activity level and action spectrum in MRS medium. Some of their technological properties were characterized for their potential use as protective cultures in fermented dairy products and their antifungal activity was tested in milk and yogurt. To do this, 6 fungal contaminants commonly encountered in yogurt spoilage were used. A particular strain, Lb. harbinensis K.V9.3.1Np, showed a strong antifungal activity in yogurt. Additional experiments showed that the variation of technological parameters (presence or absence of sugar, fermentation time) had no influence on the antifungal activity of this strain. This is the first time that an antifungal potential has been observed for Lb. harbinensis, a species isolated for the first time in 2005 from a fermented vegetable product. Because of its effectiveness in yogurt, Lb. harbinensis K.V9.3.1Np is a promising strain for biopreservation of fermented dairy product(s).

Bakgrund: Med industrialiseringen har de traditionella yoghurtkulturerna med en mångfald av samverkande mjölksyrabakterier fått ge plats åt de mer standardiserade. En gårdskultur framställs genom att obehandlad mjölk spontanfermenteras av gårdens egen bakterieflora och får därigenom en unik karaktär. Bakteriekulturen kan sedan ympas vidare för tillverkning av yoghurt.Syfte: Syftet med studien är framställning och vidareympning samt sensorisk och mikrobiologisk karaktärisering av termofil gårdskultur från obehandlad mjölk. Vidareympningen avser framställning av yoghurt fermenterad av gårdens egen bakterieflora.Metod: Gårdskulturen framställdes och ympades till yoghurt. Yoghurten undersöktes genom mikrobiologisk karaktärisering, antibiotikaresistens och sensorisk profilering samt jämfördes med industriell kultur och en traditionell heirloomkultur.Resultat: Resultatet visade att gårdskulturen skiljde sig både mikrobiologisk och sensoriskt. Gårdskulturen innehöll stammar av enterokocker vilka inte visade på resistens mot analyserade antibiotika.Slutsats: Det är möjligt att framställa en gårdskultur av godtagbar mikrobiologisk och sensorisk kvalitet. Gårdskulturen ger en differentierad mikrobiologisk och sensorisk karaktär i jämförelse med en industriell kultur och en traditionell heirloomkultur Metoden kan vara riskfylld och kulturen bör analyseras med avseende på patogen tillväxt. En unik gårdsyoghurt kan vara en metod för gårdsmejerister att i sitt varumärke bygga på terroir och platsens unicitet. / Background: With industrialization, the traditional yoghurt cultures with a multitude of lactic acid bacteria had to make way for the more standardized. An artisanal farm culture is produced by raw milk spontaneously fermented by the farm's own bacterial flora and thus develops a unique character. The bacterial culture can then be inoculated for the production of yoghurt.Purpose: The pupose of the study is to produce and inoculate as well as sensory and microbiological characterization of a thermophilic artisanal farm culture from raw milk. The inoculation relates to the production of yoghurt fermented by the farm's own bacterial flora.Method: The artisanal farm culture was produced and inoculated into yoghurt which was assessed by microbiological characterization, antibiotic resistance, sensory profiling and then compared with industrial culture and a traditional heirloom culture.Result: The result showed that the artisanal farm culture differed both microbiologically and with regard to sensory paramters. The farm culture contained strains of enterococci which did not show resistance to analyzed antibiotics.Conclusion: It is possible to produce an artisanal farm culture of good microbiological and sensory quality. The artisanal farm culture provides a differentiated microbiological and sensory character in comparison to an industrial culture and a traditional heirloom culture The method may be risky and the culture should be analyzed for pathogens. A unique farm yoghurt can be a method for artisan farm dairies to build their brand based on terroir.

L'objectif de ce travail était de sélectionner de manière rationnelle une bactérie probiotique par la mise en place d'un crible ainsi que d'étudier et de comprendre l'impact du potentiel d'oxydoréduction (Eh) et du bullage de gaz sur la survie de Bifidobacterium bifidum dans un produit laitier fermenté. Nous avons tout d’abord développé des techniques de sélection des bactéries sur des critères de viabilité / vitalité (analyse par cytométrie en flux) ainsi que sur des critères de fonctionnalité (pouvoir antioxydant). Nous avons pu sélectionner des souches d'intérêt industriel ainsi qu'une souche d'étude académique, Bifidobacterium bifidum.Nous avons ensuite étudié l'effet de la modification du Eh par bullage de gaz sur la survie de B. bifidum dans un produit laitier fermenté. Les laits fermentés conditionnés sous atmosphère anaérobie (Azote) et/ou réductrice (Azote-Hydrogène) permettent une meilleure survie de la souche au cours du stockage (28 jours – 4 °C) par rapport au Contrôle. Puis, nous avons analysé l'effet d'une croissance sous différents Eh sur la viabilité en milieu modèle et la fonctionnalité de B. bifidum. Une croissance en condition anaérobie et/ou réductrice permet d’améliorer à la fois la résistance aux stress (stress oxydant d’ordre physiologique, stress aux sels biliaires et stress côlon), le pouvoir réducteur (sels de tétrazolium), le pouvoir antioxydant (test KRL et test des comètes) et l’adhérence par rapport au Contrôle. Une modulation des propriétés biochimiques membranaires sous Azote et sous Azote-Hydrogène pourraient expliquer ces phénomènes. L’augmentation des composés thiols exofaciaux et l’augmentation des acides gras insaturés à longues chaines est observée pour des cellules produites sous conditions Azote et Azote-Hydrogène. Ainsi ces conditions de croissance présentent une amélioration majeure de l’effet probiotique de B. bifidum, à la fois d’un point de vue de sa résistance aux stress que d’un point de vue de sa fonctionnalité / The aim of this work was to select rationally a probiotic strain by setting up a screening method as well as study and understand the impact of the redox potential (Eh) and gas bubbling on the survival of Bifidobacterium bifidum in a fermented dairy product. In a first time, we have developed selection techniques of probiotic bacteria on the criteria of viability / vitality (flow cytometry analysis) and on the criteria of functionality (antioxidant). We were able to select strains of industrial interest as well as an academic strain, Bifidobacterium bifidum.Secondly, we have studied effect of modifying redox potential by gas bubbling on the survival of B. bifidum in a fermented dairy product. Thus, fermented milk manufactured under anaerobic condition (Nitrogen,) and/or under reducing one (Nitrogen-Hydrogen) allow a better survival of the probiotic strain during the storage (28 days) at 4 °C compared with the Control fermented milk. Yogurt starter strains are not impacted. Then, we have analysed the effect of a growth under various Eh on the viability in model medium and the functionality of B. bifidum. A growth under anaerobic and/or reducing condition thus improved resistance to stress (physiological oxidative stress, bile salts and intestinal stress) the reducing power (tetrazolium salts) and the antioxidant power (KRL test and comet assay) compared with the Control. The adhesion to Caco-2 cells under these conditions is also improvedModulation of biochemical membrane properties under Azote and Azote-Hydrogen conditions could explain these phenomena. An increase in the proportion of exofacial thiol groups and in the proportion of unsaturated fatty acids with long chain was observed for cells produced under Nitrogen and Nitrogen-Hydrogen. These growth conditions present a major improvement for the probiotic effect of B. bifidum, regarding its resistance to stress and its functionality

Submitted by Geandra Rodrigues (geandrar@gmail.com) on 2017-12-20T17:22:53Z No. of bitstreams: 1 fernandapyramidesdocoutogomes.pdf: 1744041 bytes, checksum: 559614bb5909c675c36516c829997921 (MD5) / Approved for entry into archive by Adriana Oliveira (adriana.oliveira@ufjf.edu.br) on 2017-12-21T10:42:28Z (GMT) No. of bitstreams: 1 fernandapyramidesdocoutogomes.pdf: 1744041 bytes, checksum: 559614bb5909c675c36516c829997921 (MD5) / Made available in DSpace on 2017-12-21T10:42:28Z (GMT). No. of bitstreams: 1 fernandapyramidesdocoutogomes.pdf: 1744041 bytes, checksum: 559614bb5909c675c36516c829997921 (MD5) Previous issue date: 2017-08-31 / A presença de resíduos de antimicrobianos em leite pode representar grave problema de saúde pública. Por este motivo, algumas medidas legais foram tomadas pelos órgãos competentes, como a venda de medicamentos antimicrobianos sob prescrição médica ou médico veterinária, a observância de Boas Práticas Agropecuárias, e a definição de limites máximos de resíduos (LMR) em alimentos de origem animal. No entanto, os LMR estabelecidos não visam os efeitos sobre tecnologia e fabricação de produtos lácteos, mas sim a proteção da saúde pública. Sob o aspecto tecnológico, as bactérias lácticas são indispensáveis na produção de derivados lácteos fermentados, pois promovem a acidificação controlada e melhoram a textura e o sabor do produto. Assim, a hipótese norteadora deste estudo é que resíduos de antimicrobianos em leite, mesmo abaixo do LMR, são capazes de alterar negativamente a resposta fermentativa das bactérias lácticas. Para tal, foram empregados cinco antimicrobianos (amoxicilina, ceftiofur, gentamicina, sulfametazina e tetraciclina, representante dos cinco principais grupos de antimicrobianos constantes do Plano Nacional de Controle de Resíduos e Contaminantes do Ministério da Agricultura, Pecuária e Abastecimento - MAPA), em cinco diferentes concentrações (0; 0,50; 0,75; 1,0 e 1,25 do respectivo LMR), que foram testados frente a três fermentos comerciais, DELVO® FRESH FC-211 (Lactococcus lactis subsp. lactis e Lactococcus lactis subsp. cremoris), DELVO® CHEESE CP-101 (Streptococcus thermophilus) e DELVO® FRESH YS-131 (Lactobacillus bulgaricus e Streptococcus thermophilus), amplamente utilizados na fabricação de queijos e iogurtes. O leite foi proveniente de três animais diferentes, comprovadamente não-tratados com antimicrobianos. Os controles e tratamentos experimentais foram analisados com respeito à cinética fermentativa. O efeito inibitório das substâncias antimicrobianos foi determinado pela variação na curva de acidificação, bem como quanto ao tempo para se atingir o pH final de referência de cada fermentação. Ceftiofur e tetraciclina inibiram a atividade de cultura contendo Streptococcus thermophilus, mesmo quando empregados em concentrações abaixo de seus respectivos LMR. A cultura composta por Lactococcus lactis ssp. lactis e Lactococcus lactis ssp. cremoris foi inibida pelos antimicrobianos ceftiofur e gentamicina, mesmo quando empregados em concentrações abaixo dos respectivos LMR. Ceftiofur também inibiu a cultura mista de Streptococcus thermophilus e Lactobacillus delbrueckii ssp. bulgaricus, em concentrações abaixo de seu LMR. Assim, os resultados do presente estudo indicam que concentrações abaixo do LMR de antimicrobianos em leite podem interferir negativamente na atividade fermentativa de bactérias lácticas. / The presence of antimicrobial residues in milk represents a serious public health problem. For this reason, some legal measures have been taken by the governments, as a sale of antimicrobial drugs under medical or veterinary medical prescription, observation of Good Agricultural Practices, and the definition of maximum residue limits (MRLs) in foods of animal origin. However, the established MRL do not take into account effects on technology and manufacturing of dairy products, but only the protection of public health. Under the technological aspect, lactic bacteria are indispensable in the production of fermented dairy products, because promote controlled acidification and improve the texture and flavor of the product. Thus, the guiding hypothesis of this study is that antimicrobial residues in milk, even below the MRL, are capable of negatively altering the fermentative response of lactic bacteria. Five antimicrobials (amoxicillin, ceftiofur, gentamicin, sulfamethazine and tetracycline, representing the five main antimicrobial groups included in the National Plan for the Control of Residues and Contaminants of the Ministry of Agriculture, Livestock and Supply (MAPA), in five different concentrations (0, 0.50, 0.75, 1.0 and 1.25 of the respective MRL), which were tested against three commercial lactic cultures, DELVO® FRESH FC-211 (Lactococcus lactis subsp. lactis e Lactococcus lactis subsp. cremoris), DELVO® CHEESE CP-101 (Streptococcus thermophilus) and DELVO® FRESH YS-131 (Lactobacillus bulgaricus e Streptococcus thermophilus). Widely used in the manufacture of cheeses and yogurts. The milk came from three different animals, proven untreated with antimicrobials. Experimental controls and treatments were analyzed with respect to fermentative kinetics. The inhibitory effect of the antimicrobial substances was determined by the variation in the acidification curve as well as the time to reach the final reference pH of each fermentation. Ceftiofur and tetracycline inhibited the culture activity containing Streptococcus thermophilus, even when employed at concentrations below their respective MRL. The culture composed of Lactococcus lactis ssp. lactis and Lactococcus lactis ssp. cremoris was inhibited by ceftiofur and gentamicin antimicrobials, even when used at concentrations below their MRL. Ceftiofur also inhibited the mixed culture of Streptococcus thermophilus and Lactobacillus delbrueckii ssp. bulgaricus, at concentrations below its MRL. Thus, the results of the present study indicate that concentrations below the antimicrobial MRL in milk may negatively interfere with the fermentative activity of lactic acid bacteria.