Thesis (MSc (Genetics))--University of Pretoria, 2005. / Includes summary. Includes bibliographical references. Available on the Internet via the World Wide Web.

Thesis (Th. M.)--Calvin Theological Seminary, 1988. / Includes bibliographical references (leaves 160-174).

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Thesis (M. Phil.)--University of Hong Kong, 2000. / Includes bibliographical references.

Obligate nursery pollination mutualisms such as the fig–fig wasp system, with their central plant–pollinator mutualism associated with non-pollinating satellite wasp species, can function as closed system microcosms representative of tritrophic communities. In this system, enclosed inflorescences (syconia) function as sites of seed production, as well as brood-sites for the progeny of herbivorous mutualistic pollinators, non-pollinating gallers and parasitoids of the two. Plant reproductive traits such as inflorescence size (syconium volume) and within-plant phenology (within-tree asynchrony) as can affect inter-species relationships among the three trophic levels in such plant–herbivore–parasitoid systems. Induced or natural variations in such plant traits could influence various direct and indirect effects among the organisms in the community and could even lead to the formation of feedback cycles. Furthermore, changes in the abiotic environment could have major impacts on the biotic associations in the system either by affecting the community members directly, or through their effects on plant reproductive traits. Ficus racemosa with its fig wasp community comprised of a single herbivorous pollinator mutualist, three non-pollinating parasitic gallers and three non-pollinating parasitoids was used as a model to investigate: (1) the role of mutualistic and parasitic fig wasps in affecting within-tree phenology; (2) direct and indirect biotic associations between various groups of fig wasps (pollinators, gallers and parasitoids) and the influence of inflorescence size and within-tree phenology on them; and (3) variations in the reproduction of and the biotic associations between the organisms of the community under variable abiotic climatic conditions. Patterns of plant reproductive phenology are usually considered evolved responses directed at optimizing resource use, pollen receipt/donation schedules and seed dispersal for plant individuals. Within-plant reproductive synchrony or asynchrony can arise due to variation in floral initiation patterns, as well as from localised proximate mechanistic responses to interactants such as pollinators, parasites and herbivores which could affect floral longevity or fruit development time. The investigation was begun by exploring the role of a mutualistic pollinator, and for the first time in a brood-site mutualism, that of parasitic herbivores (gallers) and parasitoids in influencing within-plant reproductive phenology. Since a syconium functions as an inflorescence which develops into a fruit after pollination, investigations were carried out on the impact on syconium synchrony of fig wasps that began their development within the brood site syconium at pre-pollination, pollination, and post-pollination stages via their effects on the development time of individual syconia in Ficus racemosa. We found that syconium initiation patterns were not the only proximate mechanism for within-tree reproductive asynchrony, and that individual syconia (even within a tree) had highly plastic development times dependent on their sizes, pollination time and the species of wasp progeny developing within them. Syconium volume, pollination early in the pollen-receptive phase and presence of early-ovipositing galler progeny reduced syconium development time, whereas the presence of late-ovipositing parasitoid progeny or pollination late in the pollen-receptive phase increased syconium development time. These results suggest an ongoing tug-of-war between syconium inhabitants to modify syconium development times. Parasitic fig wasps pull in different directions to suit their own needs, such that final syconium development times are likely to be a compromise between conflicting demands from developing seeds and from different wasp species. Inter-species relationships among the three trophic levels in plant–herbivore–parasitoid systems can potentially include various direct and indirect effects possibly mediated by induced or natural variations in plant traits. Analysing the seed and fig wasp compositions of microcosm replicates, i.e. individual syconia, shows that besides direct competition for resources and predator–prey interactions, the F. racemosa community also displays exploitative or apparent competition and trait-mediated indirect interactions. Syconium volume and within-tree asynchrony were reproductive plant traits that not only affected plant–herbivore and plant–parasitoid associations, but also possibly modified herbivore–herbivore and herbivore–parasitoid interactions. Our results also indicated that the reciprocal effects of higher trophic level fauna on plant traits (and vice versa) within this system drive a positive feedback cycle between syconium inhabitants and within-tree reproductive asynchrony. In the F. racemosa system, abiotic environmental factors could affect the reproduction of mutualistic pollinators, non-mutualistic parasites and seed production via seasonal changes in plant reproductive traits such as syconium volume within-tree asynchrony. Temperature, relative humidity and rainfall defined four seasons: winter; hot days, cold nights; summer and wet seasons. Syconium volumes were highest in winter and lowest in summer, and affected syconium contents positively across all seasons. Greater transpiration from the nurseries was possibly responsible for smaller syconia in summer. The 3–5°C increase in mean temperatures between the cooler seasons and summer reduced fig wasp reproduction and increased seed production nearly two-fold. Yet, seed and pollinator progeny production were never negatively related in any season confirming the mutualistic fig–pollinator association across seasons. Parasites affected seed production negatively in some seasons, but had a surprisingly positive relationship with pollinators in most seasons. While within-tree reproductive phenology did not vary across seasons, its effect on syconium inhabitants varied with season. In all seasons, within-tree reproductive asynchrony affected parasite reproduction negatively, whereas it had a positive effect on pollinator reproduction in winter and a negative effect in summer. Seasonally variable syconium volumes probably caused the differential effect of within-tree reproductive phenology on pollinator reproduction. Within-tree reproductive asynchrony itself was positively affected by intra-tree variation in syconium contents and volume, creating a unique feedback loop which varied across seasons. Therefore, nursery size affected fig wasp reproduction, seed production and within-tree reproductive phenology via the feedback cycle in this system. Climatic factors affecting plant reproductive traits can cause biotic relationships between plants, mutualists and parasites to vary seasonally and must be accorded greater attention, especially in the context of climate change.

A distinct pattern of obligate mutualism exists between fig tree hosts and their pollinating fig wasps. Normally one section or subsection of fig tree hosts is associated with one fig wasp genus. In general, each species is pollinated by a specific fig wasp species. This led to the hypothesis that the fig wasp and fig tree lineages diverged simultaneously. African fig wasps pollinating hosts of the Galoglychia section frequently break the normal one fig wasp species-to-one host species ratio. The phylogeny for these species was reconstructed using three DNA segments and compared to the morphological classification of their Ficus hosts. Pollinator genera were monophyletic for all analyses, however, the relative positioning of genera was inconsistent. Analyses suggest frequent host jumps between fig trees and fig wasps. Fig wasps of the genus Alfonsiella that pollinate Ficus craterostoma, Ficus stuhlmannii and Ficus petersii are morphologically similar in South Africa. Based on host association, genetic differentiation for this group was investigated. Molecular data indicated that the pollinator of F. craterostoma is a good species, while the F. stuhlmannii and F. petersii pollinators were genetically indistinguishable. Based on molecular data and morphological re-evaluation, a new Alfonsiella species is described, Alfonsiella pipithiensis sp. n. A key to all described species of Alfonsiella is provided. In order to resolve the population genetic differentiation of pollinating fig wasp species in South Africa, Platyscapa awekei was used as a model species. A few studies indicate that pollinating fig wasps can disperse between 30 and 55 kilometers. However, a recent study on two P. awekei populations in South Africa reported an FST value of 0.011, indicating that pollinators disperse approximately ten times further. This study aims to confirm these results with more detailed sampling of populations. In addition, possible temporal differentiation was tested for the South African population. Six microsatellite loci were used to detect spatial and temporal genetic differentiation in seven populations (collected from 2004 to 2006) over a 340 kilometer range. Genetic differentiation between sampled populations was low (FST = 0.0055), however, the data suggest stronger temporal genetic isolation than spatial genetic isolation. / Dissertation (MSc (Genetics))--University of Pretoria, 2011. / Genetics / unrestricted

Thesis (Ph. D.)--University of Hong Kong, 1967.

This thesis explores the role mutualist pollinators and their symbionts play in the genetic structuring and speciation of their host plants along an elevational gradient in Papua New Guinea. Using the fig and fig-wasp mutualism as a model system, we employed high-throughput sequencing techniques to explore fine-scale population genomics of both fig and wasps along their elevational range. We found there to be clear lowland and highland clustering of tree populations along the gradient, often with a mid-elevation contact zone. In the case of the pollinating wasps, we retrieved the same clustering except in this case, the genetic difference between clusters was high enough as to consider them as separate species. This result supports evidence from other studies challenging the cospeciation paradigm of one wasp species per fig species. In addition, we explore ecological traits which may promote, or at least, maintain, reproductive isolation between fig (sub)species along with behavioural preference tests from pollinating wasps. In order to further investigate the mechanisms promoting wasp speciation along the gradient, we describe Wolbachia infection status as well as strain type. Wolbachia-induced cytoplasmic incompatibility (CI) is often invoked as a possible speciation agent since it can rapidly provoke and maintain reproductive isolation between otherwise freely interbreeding insect populations. Finally, we explore non-pollinating fig wasp (NPFW) diversity along the gradient for a subset of our focal species. Our study reveals that there is a tight relationship between NPFW diversity and host species, and a mid-elevation peak.

Plant–animal interaction systems are complex food webs where the members—plants, pollinators, herbivores, parasites and predators of the pollinators/herbivores—interact with each other in ways which maximize their own fitness. Based on the net outcome, such interactions could be mutually beneficial to the interacting members (mutualism) or beneficial to only one of the interacting members at the cost of the other interacting members (herbivory, predation, parasitism). It is possible that such outcomes are actually a continuum and could swing in either direction from beneficial to detrimental and vice versa. Such transitions happen not only over long time scales, but could also happen within shorter time scales based on conditionalities. Conditional outcomes are those in which the outcome of an interaction between two partners is conditional on the involvement of a third partner. Thus, studying such outcomes necessitates taking into account systems beyond the classical two-partner interactions. In such complex multitrophic plant–animal interaction systems in which there are direct and indirect interactions between species, comprehending the dynamics of these multiple partners is very important for an understanding of how the system is structured. In Chapter 2 we investigate Ficus racemosa and its community of obligatory mutualistic and parasitic fig wasps that develop within the fig inflorescence or syconium, as well as their interaction with opportunistic ants. We focus on temporal resource partitioning among members of the fig wasp community over the development cycle of the fig syconia during which wasp oviposition and development occur and we study the activity rhythm of the ants associated with this community. We found that the members of the wasp community partitioned their oviposition across fig syconium development phenology and showed interspecific variation in activity across the diel cycle. The wasps presented a distinct sequence in their arrival at fig syconia for oviposition. We documented night oviposition in several fig wasp species for the first time. Ant activity on the fig syconia was correlated with wasp activity and was dependent on whether the ants were predatory or trophobiont-tending species; only numbers of predatory ants increased during peak arrivals of the wasps. In Chapter 3, we found that predatory ants (Oecophylla smaragdina) patrolling F. racemosa trees were attracted to the odour from fig syconia at different developmental phases, as well as to the odours of fig wasps, whereas other predatory ants (Technomyrmex albipes) responded only to odours of syconia from which fig wasps were dispersing and to fig wasp odour. However, trophobiont-tending ants (Myrmicaria brunnea) patrolling the same trees and exposed to the same volatiles were unresponsive to fig or fig wasp odours. The predatory ants demonstrated a concentration-dependent response towards volatiles from figs receptive to pollinators and those from which wasps were dispersing while the trophobiont-tending ants were unresponsive to such odours at all concentrations. Naıve predatory ants failed to respond to the volatiles to which the experienced predatory ants responded, indicating that the response to fig-related odours is learned. In Chapter 4 we characterise the dynamics of the volatile bouquet of the fig syconium from the initiation through pre-receptive, receptive, and late inter-floral stages which act as signals/ cues for different fig wasp species. We were also interested in diel patterns of volatile emission as some fig wasp species were strictly diurnal (the pollinator, Ceratosolen fusciceps) whereas other fig wasps such as Apocryptophagus fusca were observed ovipositing even during the nocturnal hours. We identified volatiles that were specific to syconium development phase as well as to the time of day in this bouquet. α-muurolene was identified as the sesquiterpene specific to receptive-phase as well as being present only during the day thus coinciding with the diurnal pollinator arrival pattern. Volatiles such as (E)-β-ocimene were present in increasing levels across the developmental stages of the fig and thus could act as background volatiles providing suitable information to fig wasps about host plants and their phases. Chapter 5 examines the responses of predatory and trophobiont-tending ant species to the cuticular hydrocarbon (CHC) extracts of four galler and two parasitoid fig wasp species associated with F. racemosa. Interestingly, the antennation response of both experienced and na¨ıve ants to these wasp extracts was identical indicating that prior exposure to such compounds is not necessary for eliciting such response. We also characterised these cuticular hydrocarbon extracts to find potential compounds which could as short-range cues for predatory ants. Ants were more responsive to the cuticular extracts of parasitoids rather than to those of galler wasps, implying that the CHC profile of carnivorous prey may contain more elicitors of aggressive behaviour in ants compared to herbivorous prey whose profiles may be more similar to those of their plant resources. We also find congruency between the cuticular profiles of parasitoids and their hosts suggesting that parasitoids could sequester compounds from their diet. Important findings and conclusions of the thesis are presented in Chapter 6. The first two parts of the appendices section discuss work carried out on alternative ways of analysing multivariate data sets such as plant volatiles and insect cuticular hydrocarbons. Appendix A details the use of Random Forests, an algorithm-based method of analysing complex data sets where there are more variables than samples, a situation akin to microarray data sets. This work illustrates the use of such techniques in chemical ecology, highlighting the potential pitfalls of classical multivariate tests and the advantages of newer more robust methods. Appendix B, an invited article following the publication of the earlier work, compares different data transformation procedures currently employed in such multivariate analysis. Appendix C details sex-specific differences in cuticular hydrocarbons of fig wasps, using the pollinator C. fusciceps as a case study.