Foot-and-mouth disease (FMD) is a viral disease endemic in Africa, the Middle East, South America, Asia and parts of Eastern Europe. It is a major constraint to international trade in livestock and livestock products in many African countries. In southern Africa, African buffaloes (Syncerus caffer) are reservoirs of the South African Territories (SAT) 1, SAT 2 and SAT 3 FMD viruses, and cattle raised in the vicinity of wildlife conservation areas are at constant risk of becoming infected with FMD viruses. In Mozambique, control of FMD is fundamentally based on vaccination of cattle in zones around protected areas. However, the vaccination protocol recommended by the vaccine producer (two primary vaccinations followed by four- to six-monthly boosters) is logistically impractical and financially not suitable for most countries. As a result, the double primary vaccination is usually not implemented. A commercially available bivalent FMD vaccine, containing the SAT 1 and SAT 2 serotypes, was assessed for its ability to induce and sustain immunity in cattle for at least 6 months following a single primary inoculation. The study was conducted with cattle reared in Limpopo National Park (LNP), Mozambique, and adjacent areas. One hundred and seventy five seronegative cattle aged between 6 and 18 months were vaccinated and 42 others from the same areas were left unvaccinated, as controls. A group of 39 vaccinated cattle were revaccinated 4 months after initial vaccination and 63 others were revaccinated 6 months after initial vaccination. The vaccinated and unvaccinated cattle were bled at predefined intervals (at vaccination, and at 1, 4, 5, 6, 8, 10 and 12 months post vaccination) and sera were tested with a liquid phase blocking ELISA to measure the antibody level against FMD virus. A high proportion (73%) of vaccinated cattle had seroconverted (log10 titre ≥1.6 for any SAT serotype) at one month after vaccination with a single primary dose and there was no significant difference between the proportions of animals that seroconverted to SAT 1 compared to SAT 2. A higher proportion of animals within LNP (82%) than outside LNP (50%) had seroconverted at one month after vaccination (P = 0.001). Overall, however, only relatively few animals (27% for SAT 1, 35% for SAT 2 and 7% for SAT 3) had protective antibody titres (log10 titre ≥2). At 4 months after vaccination, a very low proportion (8.3%) of vaccinated cattle had antibody titres ≥1.6 to any of the SAT serotypes, and there was no significant difference between the proportions of animals with antibodies to SAT 1 (2.1%) compared to SAT 2 (7.3%) (P = 0.17). No cattle had a protective titre (≥2) to SAT 1 at 4 months and only 4.2% to SAT 2. The revaccination at 4 months after initial vaccination elicited antibody titres ≥1.6 in 22% of vaccinated animals at one month after revaccination; this rose two months later to 90% and remained high (91%) at 10 months post first vaccination before dropping to 65% at 12 months. However, only 15% of cattle had protective titres (≥2) to any of the SAT serotypes at 12 months. For cattle revaccinated at 6 months after first vaccination the percentage of cattle that had a titre ≥1.6 two months after revaccination was also high (80%), remained high (89%) at 10 months post first vaccination and dropped to 54% at 12 months after first vaccination. Only 11% of cattle had protective titres (≥2) at 12 months. The research findings indicate that, although the vaccine is able to induce production of antibodies against SAT 1 and 2 in a significant percentage of cattle within one month after a single primary vaccination, these antibodies are short lived and have largely disappeared by 4 months post vaccination. This suggests that a protocol of a single primary vaccination is inadequate in naïve animals, even if revaccination takes place four months later. Revaccination improved the immune response for a longer period, resulting in detectible titres in the majority of animals for 6-8 months post revaccination. This can be used in disease control programmes to ensure some protection of cattle particularly when it is applied immediately before identified high risk periods of occurrence of FMD outbreaks. However, it seems unlikely that six-monthly revaccination is sufficient to maintain adequate levels of protective immunity. The study highlighted several difficulties associated with the vaccination of livestock under field conditions and the conduction of field trials. These included difficulties with cold chain maintenance, poor infrastructure for animal handling, and loss of follow-up due to loss of animal identification or poor owner/herder compliance. Copyright / Dissertation (MSc)--University of Pretoria, 2012. / Production Animal Studies / unrestricted

The majority of the world’s most widespread and problematic pathogens evade host immune responses by inducing strain-specific immunity. The host immune system seems to induce a vigorous immune response towards hypervariable epitopes, seemingly attracting less attention to more highly conserved vital regions. The South African Territory (SAT)-2 foot-and-mouth disease virus (FMDV) is the most prevalent and antigenic diverse of the SAT serotypes with the occurrence of multiple antigenic and genetic subtypes. Identification of the fine antigenic structure of the capsid of these viruses remains essential in the design and engineering of a vaccine seed strain that confers cross-protection against intra-typic viruses. Towards refocusing the antigenicity of SAT2/ZIM/07/83 virus, two strategies were utilised, (1) replacement of predicted antigenic determinants to corresponding sites of the antigenic distant SAT2/EGY/09/12 virus and (2) charge-dampening of previously identified epitope regions with alanine residues. The antigenic distance of refocused mutants was evaluated by (1) virus neutralisation assays using parental and heterologous convalescent bovine sera and (2) through antigenic profiling with non-neutralising SAT2-specific murine monoclonal antibodies (mAbs). One antigenic site on VP1 (Site 3) was identified using bovine polyclonal antibodies, whereas an additional three epitope regions were elucidated using the murine mAbs. Furthermore, the cell culture-adapted vSAT2 was shown to utilise a third FMDV alternate receptor to infect integrin- and heparin sulphate-deficient cell lines. Comprehensive knowledge on the antigenic structure of these viruses will assist in the fundamental design of engineered vaccines by incorporating critical antigenic sites that confer increased antigenicity and cross-protective immune response against myriad SAT2 field strains. Furthermore, this information will not only improve design of vaccine seed viruses, but will also contribute towards novel vaccine constructs or even empty nanoparticles as a vaccine strategy in the future. / Thesis (PhD)--University of Pretoria, 2020. / Agricultural Research Council / National Research Foundation / Red Meat Industry Trust / Poliomyelitis Research Foundation / Microbiology and Plant Pathology / PhD / Unrestricted

In recent decades, a number of foot-and-mouth disease (FMD) outbreaks have occurred in countries that had been FMD-free for many years. The last FMD outbreak in the United States occurred in 1929 and the country contains a naïve livestock population, meaning it is susceptible to an outbreak. In the event of an FMD outbreak in the United States, the speed at which the source and contacts between livestock can be identified impacts both the implementation and effectiveness of mitigation strategies. The purpose of this thesis was to analyze the impact of higher levels of animal traceability on the immediate welfare losses resulting from an FMD outbreak originating in Utah. An epidemiological model was used to simulate the spread of the disease throughout the livestock population of Utah and estimate a mean number of animals depopulated over 1000 iterations for low, medium and high levels of trace intensity. This number of animals depopulated was then used to create supply shocks in an equilibrium displacement model. This model revealed the welfare losses across four marketing levels for beef, three for pork and two for pork. The research contained in this thesis determined that the adoption of a high intensity trace system can prevent immediate welfare losses of between $131 and $190 million for the United States beef industry, including $49 million to the Utah fed cattle, feeder cattle and market hog marketing levels

Picornaviruses are responsible for some of the most common and debilitating diseases affecting humans and animals worldwide. The objectives of this dissertation research were (1) estimate phylogenetic relationships among 11 picornavirus genera and within three species: foot-and-mouth disease virus (FMDV: Aphthovirus) which afflicts cloven-hoofed animals and human rhinovirus A and B (HRV: Enterovirus) which cause the common cold; (2) better understand the impact recombination has on genomic organization and evolution; (3) characterize where positive and purifying selection has occurred in proteins and how selection has influenced phenotype. The dissertation includes four studies. The first chapter provides an overview of the evolutionary significance of recombination, its detection and estimation, and its effect on phylogenetic analysis in four biological systems: bacteria, viruses, mitochondria, and the human genome. Chapter two investigates the inter- and intra-serotypic relationships within FMDV by examining 12 genes. Gene sequences were analyzed to assess recombination breakpoint locations, genetic diversity, and natural selection in FMDV. Recombination breakpoints were located throughout the genome. Paraphyletic relationships among serotypes were not as prevalent as previously reported, suggesting that convergent evolution was prevalent. Purifying selection was the dominant evolutionary force influencing both genotype and phenotype. Chapter three examines inter- and intra-specific relationships of HRV using 11 genes. Similar hypotheses were tested as in chapter two. No recombination was detected and phylogenetic relationships among enteroviruses, HRV-A, and HRV-B remain unresolved. The evolution of HRV-A major serotypes appeared to be under extensive purifying selection, HRV-A minor serotypes under predominantly positive selection, and a nearly equal influence from both kinds of selection was evident for HRV-B serotypes. Chapter four examines phylogenetic relationships among genera using three conserved genes. The hypothesis of cospeciation between picornaviruses and their hosts was also tested. The deepest split in the family separated Hepatovirus, ‘Tremovirus’, Parechovirus, and seal picornavirus type 1 from the remainder of the family. Enterovirus and ‘Sapelovirus’ were sister taxa. Cardiovirus, ‘Senecavirus’, Aphthovirus, Erbovirus, Teschovirus, and Kobuvirus were derived from a common ancestor with Kobuvirus occupying a basal position relative to the other genera in this clade. My analyses suggest that picornaviruses have not cospeciated with their known hosts.

No description available.

A proposed Foot and Mouth Disease (FMD) free zone, in the eastern region of Thailand, was evaluated by FMD experts with the World Organisation for Animal Health (OIE) during 2012-2013. The zone, however, did not qualify for an FMD-free zone with vaccination because it did not comply with the requirements in the OIE Terrestrial Code. Then, the Department of Livestock Development (DLD) within the government of Thailand revised laws and regulations related to the FMD control program in order to be in compliance with the OIE's requirements. The revised FMD control program has been implemented since 2015. These revisions and implementations, however, have not been evaluated. The main objectives of this study were to determine whether the revised regulations (since 2015) currently being implemented are fully in compliance with the OIE's requirements, and to verify whether the implementation of the current FMD control program is sufficient to control FMD effectively. First, this study developed an evaluation framework and assessment tools for use in the evaluation of the FMD control policies and their implementation in the eastern region of Thailand. The assessment tools include assessment matrices, three sets of questionnaires, and interview questions. When applied, the assessment matrices identify shortcomings of policy design, policy implementation, veterinary capacity, and stakeholder engagement. Questionnaires and interview questions collect information that examines the consistency of elements of the FMD control program against criteria in the assessment matrix. Then, the design of current FMD control policies was assessed by interviews of DLD officers at national level who formulate policies related to FMD control program and by reviews of DLD existing written policies and documents. This study found that the design of current FMD control system is appropriate and meets the OIE's requirements. Next, the implementation of the current FMD control program in the eastern region of Thailand was assessed. The assessment was conducted by (i) questionnaire surveys with DLD officers at local level, private veterinarians, and farmers, (ii) interviews with DLD officers at national and regional level and private veterinarians, and (iii) field observations. The assessment found that the current implementation of the FMD control program in the eastern region of Thailand needs further improvement in order to meet the OIE's requirements. This study also proposes recommendations to the DLD in improving the FMD control system in the eastern region of Thailand including surveillance system, reporting system, vaccine strategy, animal movement control system, and response plans. For example, there should be an increase of stakeholders' awareness of disease reporting requirements. Evidence of adequate vaccination coverage and population immunity should be available and accessible. Allocation of staff at local level should be reconsidered for more appropriate service deliveries. Communications between DLD and stakeholders regarding the FMD control program need to be strengthened for more effective message delivery. Lastly, this study strongly recommends that there should be strong commitments and supported by the higher level of the Thai's government. / Doctor of Philosophy / Foot and Mouth Disease is a highly contagious and the most economically important infectious viral disease of livestock. The disease exists in Thailand and interrupts livestock trade through the loss of access to international markets. The Department of Livestock Development (DLD) within the government of Thailand has proposed to make the eastern region of Thailand an officially recognized FMD-free zone with vaccination in order to advance market access and trade facilitation. In order to be an official FMD-free zone, the proposed FMD-free zone (eastern region of Thailand) needs to be evaluated by experts within the World Organization for Animal Health (OIE) and must meet all requirements of the OIE standard for this certification. Since 2015, there has not been an evaluation to determine the effectiveness and appropriateness of the current FMD control program in the eastern region of Thailand. This study aims to evaluate the design and implementation of the current FMD control program in the eastern region of Thailand. This study, first, developed an evaluation framework and assessment tools for use in the evaluation of the FMD control policies and their implementation in the eastern region of Thailand. Then, the design of the current FMD control policies and their implementation were evaluated. The assessment found that the design of the current FMD control system is appropriate and meets the OIE's requirements. However, the current implementation of the FMD control program needs further improvement. This study also proposes recommendations to the DLD in order to enhance and improve the FMD control system in the eastern region of Thailand to be recognized as an FMD-free zone by the OIE.

published_or_final_version / abstract / Zoology / Doctoral / Doctor of Philosophy

A Leucose Enzoótica dos Bovinos (LEB) é uma enfermidade neoplásica, infectocontagiosa, pluri-sintomática, de evolução crônica, que compromete os órgãos linfopoiéticos e está associada ao desenvolvimento de linfocitose persistente (LP) e linfossarcoma. Acarreta diminuição na produção, quer por seus efeitos danosos diretos, quer pelos indiretos. No entanto, seu efeito na função e na quantidade das diferentes subpopulações de linfócitos, assim como seu papel no estabelecimento de outras doenças oportunistas, ainda não está claro. O presente estudo avaliou a resposta imunitária de bovinos da raça Holandês Preto e Branco naturalmente infectados pelo vírus da LEB (VLB), após desafio antigênico fornecido por vacinação contra o vírus da febre aftosa. Para tal, foram coletadas amostras sanguíneas antes do desafio e, após o desafio, semanalmente, por sete semanas, de dez vacas soropositivas, sem LP; de dez vacas soropositivas, manifestando LP; e de dez vacas soronegativas. Foram avaliadas as alterações quantitativas das diferentes subpopulações de leucócitos circulantes; a função dos linfócitos B, por meio da quantificação de diferentes isotipos de imunoglobulinas (Ig) séricas; os índices de proliferação linfocitária; os índices de morte celular por apoptose ou por necrose; e as concentrações séricas de interleucina-10 (IL-10), IL-12, inteferon- (IFN-&gamma;) e fator de necrose tumoral-&alpha; (TNF-&alpha;). Foi verificada a normalidade da distribuição dos resultados obtidos, utilizando-se do teste de Anderson-Darling, e sua homoscedasticidade, utilizando-se do teste F (para dados que apresentaram distribuição normal) ou do teste de Lavene (para dados que não apresentaram distribuição normal). Para a avaliação das diferenças entre as médias dos resultados obtidos, de acordo, respectivamente, com a ocorrência ou não de homoscedasticidade, foram feitos, para dados com distribuição normal, os testes de análise de variância (One-way ANOVA), seguida do teste de Tukey-Kramer ou o teste t; e, para dados que não apresentaram distribuição normal, o teste de Mann-Whitney ou o teste de Kruskal-Wallis. Para todos os resultados, foram consideradas significantes as análises que apresentaram p&le;0,05. Verificou-se que não houve diferença nas concentrações séricas de IgG1, de IgM e de IgA, tanto entre os tempos de coleta, quanto, a cada tempo, entre animais pertencentes aos diferentes grupos. As concentrações séricas de IgG2 aumentaram, após a vacinação, em todos os animais (p<0,05). Todavia, 17 dias após o desafio antigênico, as concentrações séricas de IgG2, em animais manifestando LP foram, a cada tempo de coleta, menores (p<0,01) que aquelas verificadas nos animais pertencentes aos demais grupos, indicando que animais com LP apresentam resposta humoral menos intensa e menos duradoura. Observou-se que ocorreu um aumento no índice de proliferação de linfócitos sanguíneos (p<0,01), 24 dias após a vacinação contra o vírus da febre aftosa, independente da presença de infecção pelo VLB. A partir deste momento, ocorre um aumento na porcentagem de linfócitos &gamma;&sigma; circulantes (p<0,05) e posterior diminuição nas concentrações séricas de IgG2 (p<0,05), indicando regulação desta resposta humoral por linfócitos &gamma;&sigma;. Em bovinos com LP, o aumento na porcentagem de linfócitos circulantes foi maior (p<0,05), ocasionando diminuição mais intensa e mais precoce nas concentrações séricas de IgG2. Constatou-se que a LP ocorre em decorrência de menor índice de apoptose, posto que as porcentagens de leucócitos sofrendo processo de apoptose foram menores (p&le;0,001) entre as células obtidas de animais manifestando LP, do naquelas coletadas dos animais pertencentes aos demais grupos. Verificou-se que as concentrações séricas das citocinas de perfil Th1, IL-12 e IFN-&gamma;, são maiores em amostras sangüíneas de animais infectados pelo VLB, alinfocitóticos (p<0,01), ao passo que as concentrações séricas das citocinas de perfil Th2, IL-10 e TNF-&alpha;, são maiores em amostras sangüíneas de animais infectados manifestando LP (p<0,01), indicando que alterações no perfil sérico de citocinas podem ser causa ou consequência da LP. Em resposta ao desafio vacinal, ocorre uma elevação nas concentrações séricas de IL-10 (p<0,01), de TNF-&alpha; (p=0,005) e de IFN-&gamma; (p<0,01), três dias após o desafio, e de IL-12 (p<0,001), dez dias após o desafio. A elevação na concentração sérica de IL-10 perdura até 31 dias após o desafio e pode ser responsável pelo maior índice de proliferação de linfócitos &gamma;&sigma; verificado a partir de 31 dias após a vacinação. Foi observado que a maioria dos linfócitos B circulantes, em bovinos, consiste de linfócitos B1 e, em animais infectados pelo VLB, a LP ocorre em decorrência de um aumento na porcentagem de linfócitos B1a (p<0,05). Além disso, em animais infectados pelo VLB, apresentando LP, as relações entre linfócitos T auxiliares e citotóxicos são menores (p<0,01) e a porcentagem de linfócitos &gamma;&sigma; é maior (p<0,01), indicando atividade viral nas células infectadas. Assim, os resultados permitem-nos concluir que animais infectados pelo VLB, manifestando LP, apresentam alterações na resposta imunitária frente vacinação contra o vírus da febre aftosa. / Enzootic Bovine Leukosis (EBL) is an infectious, multi-symptomatic, chronic, neoplastic disease, which undermines the lymphopoietic organs and is associated with the development of persistent lymphocytosis (PL) and lymphosarcoma. Infected animals present a decrease of production, either by its direct or its indirect harmful effects. However, its effect on the function and quantity of different lymphocyte subpopulations, as well as its role in the establishment of other opportunistic diseases, are unclear. This study evaluated the immune response of Holstein dairy cattle naturally infected with Bovine Leukosis Virus BLV, after antigen challenge provided by vaccination against foot and mouth disease (FMD) virus. To this end, blood samples were collected before challenge and after challenge, weekly, for seven weeks, from ten seropositive cows without PL, from ten seropositive cows expressing PL, and from ten seronegative cows. We evaluated the quantitative changes of different subpopulations of leukocytes; the function of B lymphocytes, through the quantification of different isotypes of immunoglobulins (Ig) serum concentration; the rate of lymphocyte proliferation; the rate of cell death by apoptosis or necrosis; and the serum concentrations of interleukin-10 (IL-10), IL-12, inteferon-&gamma; (IFN-&gamma;), and tumor necrosis factor-&alpha; (TNF-&alpha;). It was verified the normality of distribution of the results using the Anderson-Darling test, and their homoscedasticity, using the F test (for data with normal distribution) or the Levene test (for data without normal distribution). For the evaluation of differences between the average results, according respectively to the presence or absence of homoscedasticity, we used, for data with normal distribution, One-way ANOVA test, followed by the Tukey-Kramer test or the t test, and, for data without normal distribution, the Mann-Whitney test or the Kruskal-Wallis test. Results with p&le;0.05 were considered statistically significant. There were no differences related to serum IgG1, IgM, and IgA concentrations, both among sampling time and, every time, among animals belonging to different groups. IgG2 serum concentrations increased after vaccination in all animals (p<0.05). However, in animals expressing PL, each collection time, 17 days after antigen challenge, IgG2 serum concentration was lower (p<0.01) than those observed in animals belonging to other groups, indicating that animals with PL present less intense and less enduring humoral response. It was observed that there was an increase in the rate of lymphocyte proliferation (p<0.01) 24 days after vaccination against FMD virus, irrespective of the presence of infection by BLV. From this moment, there was an increase in the percentage of &gamma;&sigma;-lymphocytes (p<0.05) and a subsequent decrease in serum IgG2 (p<0.05), indicating regulation of this humoral response by &gamma;&sigma;-lymphocytes. In cattle with PL, the increase in the percentage of &gamma;&sigma;-lymphocytes was higher (p<0.05), leading to more intense and earlier decrease in IgG2 serum concentration. It was found that PL is due to a lower rate of apoptosis, since the percentage of leukocytes undergoing apoptosis was lower (p&le;0.001) among cells obtained from animals expressing PL, when compared to those collected from animals from the other groups. It was found that serum concentrations of Th1 cytokines, specifically IL-12 and IFN-&gamma;, were higher in blood samples from nonlymphocytotic infected animals (p<0.01), whereas serum concentrations of Th2 cytokines, particularly IL-10 and TNF-&alpha;, were higher in blood samples from infected animals expressing LP (p<0.01), indicating that changes in serum cytokines profile may be a cause or a consequence of PL. IL-10 (p<0.01), TNF-&alpha; (p=0.005), and IFN-&gamma; (p<0.01) serum concentrations increased three days after the challenge, and IL-12 serum concentration increased (p<0.001), ten days after the challenge. The increase in IL-10 serum concentration lasts until 31 days after the challenge and may account for the higher rate of &gamma;&sigma;-lymphocyte proliferation found from 31 days after vaccination. It was observed that the majority of circulating B lymphocytes in cattle consists of B1 lymphocytes and that, in BLV-infected animals, PL occurs due to an increase in the percentage of B1a lymphocytes (p<0.05). Moreover, in lymphocytotic BLV-infected animals, the rate between helper and cytotoxic Tlymphocytes are smaller (p<0.01) and the percentage of &gamma;&sigma;-lymphocytes is greater (p<0.01), indicating viral activity in infected cells. Thus, results allow us to conclude that lymphocytotic BLV-infected animals show changes in the immune response after vaccination against FMD virus.

Cette thèse porte sur l’analyse des apports des approches participatives épidémiologiques (PE) dans l’amélioration de la surveillance de la fièvre aphteuse (FA), en particulier dans l’implication des éleveurs à l’échelle locale. Le premier objectif était d’évaluer l’efficacité de la surveillance et de la vaccination contre la FA à l’échelle locale en utilisant PE. Le deuxième objectif était d’évaluer la faisabilité d’application des outils de PE pour améliorer l’implication des éleveurs dans la surveillance de la FA au Vietnam. Les méthodes de PE ont compris des entretiens informelles (en groupes ou individuels), des outils de notation (classement par paires, empilement proportionnel, matrice de notation), des outils de visualisation (cartographie, lignes de temps, diagramme d’écoulement) et d’outil sociologique appelée méthode Q. 122 entretiens en groupe, 467 entretiens individuels, 339 questionnaires ont été effectuées en 2014 et 2015. 409 sérums et 152 fluides d’oesophagiens ont été prélevées. Les enquêtes par questionnaire, les tests d’ELISA et de rtRT-PCR et la modélisation de Bayésienne ont été utilisées pour valider la performance de PE dans la surveillance de la FA. La maladie a été considérée comme la problème la plus importante dans la production animale. La FA était la maladie la plus importante pour la production laitière, suivie par la septicémie hémorragique. Pour la production de bovin de viande, elle a été enregistrée dans l'ordre inverse. La maladie la plus importante pour la production porcine était le syndrome reproducteur et respiratoire porcin tandis que la FA était classé en quatrième. Les agriculteurs ont des capacités de diagnostic différentiel des maladies en fonction des symptômes cliniques. La prévalence sérique de la FA a été estimée à 23% pour la population 1 (proche la frontière du Cambodge) et 31% pour la population 2 (loin de la frontière du Cambodge), respectivement. La sensibilité et la spécificité de PE a été estimée à 59% et 81%, respectivement. La valeur prédictive positive et négative a été estimée à 48% et 86% pour la population 1 et 58% et 81% pour la population 2, respectivement. La présence du sérotype A, de la lignée A/Asia/Sea-97 et du sérotype O, lignées O/ME-SA/PanAsia et O/SEA/Mya-98 a soutenu la circulation du virus par des mouvements transfrontalières des animaux. Les fermes laitières ont appliquées la quarantaine, la désinfection et la vaccination comme méthodes de prévention. Les fermes de bovin de viande ont préférées la propreté et les bonnes pratiques de gestion de l'élevage. Les fermes porcines ont considérées que toutes les méthodes de prévention avaient la même importance. Trois discours «Croire», «Confiance», «Défi», représentés les perceptions communes des éleveurs et représentés 57,3% de la variance, ont été identifiés en utilisant méthode Q. Les éleveurs ont pris eux-mêmes les décisions de vaccination et se sont sentis plus en sécurité après la vaccination contre la FA. Cependant, une partie de la population étudiée n'a pas considérée la vaccination comme le premier choix de prévention. L'analyse de sensibilité de rapport de bénéfice-coût de la vaccination de la FA a montré que la vaccination était rentable pour tous les types de production, même si l'augmentation du coût de la vaccination et la diminution du prix de lait et de viande. 18 nouveaux villages sentinelles ont été identifiés comme potentiellement infectés par la FA. 77 animaux soupçonnés ont été confirmés positives avec la FA. La sensibilité et la spécificité de PE a été estimée à 0,75 et 0,65 respectivement. L'efficacité de PE pour détecter une épidémie de FA au Vietnam ont été démontrée. La vaccination a était montré la méthode la plus économique et la plus efficace pour prévenir la FA. Grâce à l'application des outils simples et adaptables qui facilitent la participation directe et active des éleveurs, PE permet d'obtenir une meilleure acceptabilité de la surveillance et des informations qualifiées. / This PhD thesis aimed at evaluating the contribution of participatory epidemiology (PE) to improve the foot-and-mouth disease (FMD) surveillance and control activities, especially the involvement of farmers at local level. The first objective aimed at assessing the effectiveness of the FMD surveillance and vaccination strategy at local level by using PE approach. The second objective aimed at assessing the feasibility of applying PE tools to improve the involvement of farmers in the FMD surveillance in Vietnam. PE methods performed in our study included informal interviews (focus group and individual), scoring tools (pairwise ranking, proportional pilling, disease impact matrix scoring and disease signs matrix scoring), visualization tools (mapping, timeline, flow chart) and sociological tools called Q methodology. 122 focus groups, 467 individual interviews, 339 questionnaire surveys were performed during two field studies in 2014 and 2015. 409 sera and 152 probang samples were taken. Conventional questionnaire surveys, Bayesian modelling and laboratory test (ELISA and rtRT-PCR) was used to validate the performance of PE in FMD surveillance. Disease was considered as the most important issues in animal production. FMD was the most important disease for dairy cattle production, followed by haemorrhagic septicaemia. For beef cattle production, it was recorded in reverse order. The most important disease for pig production was porcine reproductive and respiratory syndrome while FMD was ranked fourth. Farmers showed their abilities in differential diagnostic of important diseases based on its clinical symptoms. Sero-prevalence of FMD were estimated at 23% for population 1 (bordering with Cambodia) and 31% for population 2 (locating far from the border), respectively. Sensitivity and Specificity of PE were found to be 59% and 81%, respectively. The positive and negative predictive value were found to be 48% and 86% for population 1 and 58% and 81% for population 2, respectively. The presence of serotype A, lineage A/Asia/Sea-97 and serotype O with two separate lineages, O/ME-SA/PanAsia and O/SEA/Mya-98 supported virus circulation through trans-boundary animal movement activities. Dairy farms frequently applied quarantine, disinfection and vaccination as prevention methods. Beef farms preferred cleanliness and good husbandry management practices. Pig farms considered that all prevention methods had the same importance. Three distinct discourses “Believe”, “Confidence”, “Challenge”, representing common perceptions among farmers and accounting for 57.3 % of the variance, were identified based on Q methodology. Farmers take vaccination decisions themselves without being influenced by other stakeholders and feel more secure after FMD vaccination campaigns. However, part of the studied population did not consider vaccination to be the first choice of prevention strategy. The benefitcost ratio of FMD vaccination for dairy cow production in large-scale and in small-scale and meat cattle production were 37.2, 30.0 and 7.3, respectively. The sensibility analysis showed that FMD vaccination was profitable for all of production types even through the increase of vaccine cost and decrease of market price of milk and slaughter cattle. From the focus groups organized at sentinel villages, 18 new villages were identified as potentially infected by FMD. 77 suspected animals were confirmed positive for FMD, with viral serotypes O and A. Sensitivity and specificity of participatory surveillance were recorded at 0.75 and 0.65, respectively. The effectiveness of PE in FMD surveillance system to detect outbreak in Vietnam was demonstrated. It was demonstrated that vaccination was the most effective and economic method to prevent FMD. Through the application of simple, adaptive tools which facilitate direct and active participation of farmers, PE allowed to reach a better acceptability of surveillance and to obtain qualified information.

M. Tech. Veterinary Technology. / Aims of this study were to: determine the suitable buffers and optimal concentrations of these buffers, to be used in the ISA 206 B oil-based vaccine formulations that will ensure pH levels of &#x2265%x; 7.0; consistent emulsion type and particle sizes following a storage period of at least 24 months at 4 C ; determine the effects of temperature on the stability of the vaccine formulation during storage ; determine the optimal buffer antigen ratio in the water phase of the ISA 206 B oil-adjuvanted FMD vaccine containing SAT serotypes ; determine the effects of saponin (Q-Vac trade mark) on the buffering capacity during storage, in the ISA 206 B oil-adjuvanted FMD vaccine containing the SAT serotypes; and determine the shelf life of this improved (stabilised) oil vaccine. Previous research by the ARC scientists has shown that the immunity elicited by the ISA 206 oil adjuvanted vaccines could persist up to 50 weeks post vaccination in cattle (Cloete et al., 2008; Hunter, 1996). However, they did not show if this immunity was protective or not. Although it is known within the FMD field that sometimes immunity levels do not always translate into protection against an infection, if protection can be shown - even after vaccination using a stored vaccines - achievement of the above mentioned objectives could enable a once-a-year vaccination regimen in the control zone of RSA. Moreover, this once-a-year vaccination regimen could also substantially reduce the logistical costs involved during vaccination campaigns, compared to the current biannual vaccination regimen. Once the shelf life of the vaccine has been established, the vaccine could also be registered as a stock remedy under the Fertilisers, Farm Feed, Agricultural Remedies and Stock Remedies Act, 36 of 1947, administered by DAFF. The registration of this vaccine could in turn enable the RSA to supply the vaccine to neighbouring South African Development Community (SADC) countries and the rest of African countries where the SAT serotypes occur.