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Two organic synthetic methods for the generation of methyl bearing chiral centers have been developed using: 1) dimerization of methylketene and 2) a free radical-based addition/elimination reaction involving allyl bromides. The first method, the asymmetric dimerization of methyl ketene, followed by an asymmetric aldol reaction and the appropriate functional group manipulations enabled us to construct the (2S, 4S, 6S) trimethylnonyl subunit found in the siphonariene class of natural products. The latter method explored the stereoselective potential of a free radical-based condensation reaction by examining compounds which are known to be able to support chiral auxiliaries and chiral Lewis acids. Additionally, substituent effect on the rates of this reaction were examined closely and found to be comparable to similar, previously examined systems. The synthetic utility, magnitude and scope of this reaction are discussed. / Ph. D.

t-Butoxyl radical has been used as a chemical model for hydrogen abstractions in many enzymatic and biological systems. However, the question has arisen as to how well this reactive intermediate mimics these systems. In addressing this concern, absolute rate constants and Arrhenius parameters for hydrogen abstraction by t-butoxyl radical were measured for a broad class of substrates including amines, hydrocarbons, and alcohols using laser flash photolysis. Initially, no obvious reactivity relationship between rate constant and substrate structure was observed for these homolytic reactions. However, by closely examining the Arrhenius parameters for hydrogen abstraction, a pattern was revealed. For substrates with C-H bond dissociation energy (BDE) > 92 kcal/mole, activation energy increases with increasing BDE (as expected). However, for substrates with a lower BDE, the activation energy levels out at approximately 2 kcal/mole, essentially independent of structure. Viscosity studies with various solvents were conducted, ruling out the possibility of diffusion-controlled reactions. Entropy rather than enthalpy appears to be the dominating factor at 25°C, contributing to the free energy barrier for these reactions. Laser flash photolysis was also used to study radical anions. Using an indirect photoexcitation method, the properties of radical anions, generated from aryl ketones, were investigated. These radical anions, such as t-butyl phenyl ketone and cyclopropyl phenyl ketone, measured to have decay rate constants of 1.0 x 106 s-1, although they are known to be persistent when studied electrochemically. They also had measured activation energies around 6.0 kcal/mole and log A values close to 9.5. By extending the molecules's conjugation, the decay rate constants increased to greater than 107 s-1, decreased their activation energy by half, and lowered the log A values to 8.0. This trend was observed in aryl ketones such as trans-1-benzoyl-3-phenyl cyclopropane. It is believed that the generation of a benzyl radical during the decay that facilitates the enhancement of the unimolecular decays. These unimolecular decays were also observed with the previously studied hypersensitive SET probes, 5,7-di-tert-butylspiro[2.5]octa-4,7-dien-6-one and 1,1,-dimethyl-5,7-di-tert-butylspiro[2.5]octa-4,7-dien-6-one. The decay rate constants for these radical anions were measured to be greater than 108 s-1, driven by the formation of an aromatic ring. / Ph. D.

Ultrasound can be used to create free radicals by growth and collapse of cavitation bubbles. These free radicals have potential use in various fields. The formation of free radicals can be monitored by decrease in T1 during NMR experiments due to paramagnetic effects. Our goal is to develop a method in which ultrasound is used to enhance NMR. By irradiating the sample during analytical measurements, we can decrease T1 which can be used as a non-toxic contrast agent1 producing hydroxyl radicals from the water in the body, invoke NMR enhancement using dynamic nuclear polarization2, control and understand polymer reactions3,4, and study the formation of radicals in chemical systems with EPR5. The experiments conducted indicated a decrease in T1 when ultrasound was applied. A maximum decrease was observed when 104 W of ultrasound power was applied and with higher concentrations of radical producing species. Through the experiments it was evident that the sample temperature increased during sonication. To counter this, gated sonication was used to minimize temperature increase. During sonication, the sample was vigorously mixed. Experiments where the sample was mixed through alternate means and theoretical simulations indicate that sample mixing gives an apparent decrease in T1. In situ sonication to decrease T1 shows promise. The question remains if the decrease is due to a combination of radical production and mixing or just an artifact of sample mixing. This is a difficult parameter to determine but future experiments will attempt to supply further conclusions. / Master of Science

The major objectives of this study were to investigate the antioxidant properties of flaxseed lignans secoisolariciresinol (SECO 2) and secoisolariciresinol diglycoside (SDG 1) and their major oxidative compounds using 2,2'-azobis(2-amidinopropane) dihydrochloride (AAPH 47) in an in vitro model of lipid peroxidation. This investigation was facilitated by the structural elucidation of the major oxidative compounds and the ability of flaxseed lignans to delay the onset of oxidation in two model systems. <p>This study showed that SECO 2 oxidation occurs at the aromatic (4-OH) and aliphatic (9-OH) hydroxyl groups. Conversely for SDG 1, only compounds derived from the oxidation of aromatic hydroxyl groups were obtained because the 9-OH position is glucosylated. <p>SECO 2 oxidation with AAPH 47 showed that the intermediate 2a is most likely involved in the generation of early-forming (48 and 52) and 2c for the formation of late-forming (49, 50 and 51) oxidation compounds. Compound 48 is formed from dimerization of 2a that is converted to 52 and then to 51. Compound 50 was formed by the addition of a carbon-centre free radical of AAPH (AP radical) to 2c. Compounds 50 and 51 trap carbon-centered AP radicals supporting SECO 2 as a chain-breaking antioxidant and AAPH 47 as a proper model for study of SECO 2 oxidation in vitro. <p>SDG 1 oxidation with AAPH 47 indicated that intermediates 1b and 1c are most likely involved for the formation of early forming compounds (55 and 58) and 1a leads to the late forming compounds (56 and 57). Compound 55 is a result of dimerization. Compound 56 may be directly formed via intermediate radical 1a by adding AP free radicals. Compound 56 was a stable non-radical compound that could trap AP free radicals, thereby supporting SDG 1 as a chain-breaking antioxidant. Hydrogen abstraction from 4-hydroxyl yielded the radical 1a and hydroxyl radical addition to 1a yielded 57. Compound 58 formed from the addition of OH or H2O to 1c. <p>This study demonstrated that AAPH 47 produces carbon-centred AP radicals upon thermal decomposition and mimics the formation of lipid peroxyl radicals. Interaction of carbon-centred AP radicals with SECO 2 and SDG 1 provides a good model to study the antioxidant reactions of SECO 2 in vitro. p*The relative antioxidant capacity of the flaxseed lignans versus BHT 17, in two model systems, was determined. The stoichiometric ratio for SECO 2 and SDG 1 were 1.5 and 1.1-1.2, respectively, compared to BHT 17 (2.0). The induction time by Rancimat analyzer measured inhibition of autoxidation mediated by flaxseed lignans SECO, SDG and SDG polymer in comparison with BHT 17. The induction time data demonstrated that SECO 2 protected canola oil better than either SDG 1 or SDG polymer 3. <p>These results are important for better understanding about the chemistry behind flaxseed lignan antioxidant activities. This study provided useful evidence that flaxseed lignans can be used as natural antioxidants.

The major objectives of this study were to investigate the antioxidant properties of flaxseed lignans secoisolariciresinol (SECO 2) and secoisolariciresinol diglycoside (SDG 1) and their major oxidative compounds using 2,2'-azobis(2-amidinopropane) dihydrochloride (AAPH 47) in an in vitro model of lipid peroxidation. This investigation was facilitated by the structural elucidation of the major oxidative compounds and the ability of flaxseed lignans to delay the onset of oxidation in two model systems. <p>This study showed that SECO 2 oxidation occurs at the aromatic (4-OH) and aliphatic (9-OH) hydroxyl groups. Conversely for SDG 1, only compounds derived from the oxidation of aromatic hydroxyl groups were obtained because the 9-OH position is glucosylated. <p>SECO 2 oxidation with AAPH 47 showed that the intermediate 2a is most likely involved in the generation of early-forming (48 and 52) and 2c for the formation of late-forming (49, 50 and 51) oxidation compounds. Compound 48 is formed from dimerization of 2a that is converted to 52 and then to 51. Compound 50 was formed by the addition of a carbon-centre free radical of AAPH (AP radical) to 2c. Compounds 50 and 51 trap carbon-centered AP radicals supporting SECO 2 as a chain-breaking antioxidant and AAPH 47 as a proper model for study of SECO 2 oxidation in vitro. <p>SDG 1 oxidation with AAPH 47 indicated that intermediates 1b and 1c are most likely involved for the formation of early forming compounds (55 and 58) and 1a leads to the late forming compounds (56 and 57). Compound 55 is a result of dimerization. Compound 56 may be directly formed via intermediate radical 1a by adding AP free radicals. Compound 56 was a stable non-radical compound that could trap AP free radicals, thereby supporting SDG 1 as a chain-breaking antioxidant. Hydrogen abstraction from 4-hydroxyl yielded the radical 1a and hydroxyl radical addition to 1a yielded 57. Compound 58 formed from the addition of OH or H2O to 1c. <p>This study demonstrated that AAPH 47 produces carbon-centred AP radicals upon thermal decomposition and mimics the formation of lipid peroxyl radicals. Interaction of carbon-centred AP radicals with SECO 2 and SDG 1 provides a good model to study the antioxidant reactions of SECO 2 in vitro. p*The relative antioxidant capacity of the flaxseed lignans versus BHT 17, in two model systems, was determined. The stoichiometric ratio for SECO 2 and SDG 1 were 1.5 and 1.1-1.2, respectively, compared to BHT 17 (2.0). The induction time by Rancimat analyzer measured inhibition of autoxidation mediated by flaxseed lignans SECO, SDG and SDG polymer in comparison with BHT 17. The induction time data demonstrated that SECO 2 protected canola oil better than either SDG 1 or SDG polymer 3. <p>These results are important for better understanding about the chemistry behind flaxseed lignan antioxidant activities. This study provided useful evidence that flaxseed lignans can be used as natural antioxidants.

Thesis (PhD)--University of Stellenbosch, 2011. / Please refer to full text to view abstract.

The aim of this work was to successfully prepare polymers of N-(2-hydroxypropyl)methacrylamide, (PHPMA) using controlled/"living" free-radical polymerisation technique. For this purpose, atom transfer radical polymerisation (ATRP) and reversible addition-fragmentation (chain) transfer (RAFT) polymerisation were used in preparation of a number of base polymers with the intention of quantitatively converting them into PHPMA. Both methods were applied under varying polymerisation conditions, and the kinetics of the systems investigated. Various rate constants were measured, while computer modelling of the experimental data allowed estimation of other kinetic parameters of interest. Investigations into solvent and ligand effects on the kinetics of ATRP of the activated ester methacryloyloxy succinimide (MAOS) and one of the archetypal methacrylate monomers, methyl methacrylate (MMA) were carried out. The method of RAFT was also employed in polymerisation of MAOS and a number of other monomers in the hope of finding the best synthetic precursor of PHPMA. Polymers of methacryloyl chloride (MAC) and p-nitrophenyl methacrylate (NPMA) were prepared, as well as the polymers of HPMA itself and N-isopropyl methacrylamide. Polymerisation of MMA by RAFT was also attempted in view of adding to current knowledge on the monomer's behaviour and the kinetic characteristics of its RAFT polymerisation. Preparation of PHPMA from PMAOS, PMAC and PNPMA was attempted. Successful preparation of PHPMA from the polymer of the acid chloride was achieved under mild reaction conditions, while displacement of N-hydroxysuccinimide groups of PMAOS resulted in unexpected modification of the polymer under the conditions used. Conversion of PNPMA into PHPMA was not achieved. At this stage these results suggest inadequacy of both PMAOS and PNPMA as reactive polymeric precursors.

The oxidation of lipids and antioxidants has been extensively studied in human plasma but little attention has been given to how plasma proteins are oxidised. Proteins make up the majority of biomolecules in cells and plasma and therefore are the most likely reactants with oxidants and free radicals. Previous studies in the laboratory had shown that peroxyl radicals generated by the thermolytic decay of 2-azobis (2-amdinopropane) dihydrochloride (AAPH) generated significant amounts of protein hydroperoxides, but only after a six hour lag period. In this study the existence of the six hour lag period was confirmed and shown by dialysis of the plasma to be due to the presence of low molecular weight antioxidants. The addition of both uric acid and ascorbic acid to the dialysed plasma restored the lag phase suggesting that in vivo these antioxidants act to prevent protein hydroperoxide formation. Lipid oxidation was also observed in the plasma but only after a two hour lag phase. This was the first time lipid oxidation has been observed in the absence of protein oxidation. The lipid lag phase was also abolished by dialysis of the plasma and restored by the addition of ascorbic acid and uric acid. The kinetics of tocopherol loss suggests that the tocopherol radicals act to inhibit lipid oxidation by transferring the electrons to the water-soluble ascorbate. The loss of ascorbate appears to cause the formation of a tocopherol radical mediate the lipid peroxidation process. Overall the data shows ascorbic acid scavenging the peroxyl radicals while uric acid acts to reduce the overall AAPH generated radical flux. In a separate investigation, the production of protein-bound DOPA (PB-DOPA) on albumin during X-ray radiolysis and copper mediate Fenton oxidation was investigated using a fluorescence based derivatisation method (ED-DOPA), which was compared with the more specific acid hydrolysis and HPLC analysis method. The ED-DOPA method consistently gave a much higher reading that the HPLC based methods, suggesting that the ED-DOPA method was measuring DOPA plus DOPA oxidation products. This was confirmed by oxidising X-ray radiolysis generated PB-DOPA with Cu++ to cause DOPA oxidation. The Cu++ treatment drastically increased the level of signal given by the ED-DOPA assay while HPLC analysis showed all the DOPA had been oxidised.

Os efeitos de ribonucleosídeos de guanina substituídos na posição C-8 na proliferação de linfócitos B estão bem documentados na literatura. Esses compostos são análogos de adutos formados pela adição de radicais livres a ribonucleosídeos e a RNA. Neste trabalho, verificamos as propriedades proliferativas de dois desses adutos, 8-metilguanosina (8-MeGuo) e 8-oxo-7 ,8-di-hidroguanosina (8-OxoGuo) e comparamos com 8-bromoguanosina (8-BrGuo), o composto mais estudado como indutor da proliferação de linfócitos B. 8-MeGuo e 8-OxoGuo foram sintetisados em rendimentos de 28 e 55%, respectivamente, e foram caracterizados por UV, NMR e CG-massa. Seus efeitos sobre a incorporação de timidina radioativa ([3H] TdR) no DNA de células de baço, fibroblasto 3T3(A31) e melanoma B16F10 foram examinados. Os dois adutos foram mitogênicos para células de baço mas foram seletivos quanto as células imortalizadas. 8-MeGuo atuou sobre células 3T3(A31) e 8-OxoGuo sobre as células de melanoma B16F10. O análogo não fisiológico 8-BrGuo foi efetivo em todas as células testadas. Experimentos de contagem de células, citotoxicidade e citometria de fluxo, indicaram que a síntese de DNA induzida pelas guanosinas substituídas na posição C-8 refletia crescimento celular. Foi proposto que os compostos agem de dentro da célula uma vez que seus efeitos são bloqueados em presença de um inibidor de transporte de nucleosídeo, mas não foram inibidos por um antagonista de receptor purinérgico. Os resultados obtidos, junto com os descritos na literatura, sugerem que no caso dos fibroblastos 3T3(A31) e células de baço de camundongo os efeitos proliferativos dos compostos não são dependentes do metabolismo desses compostos via salvação das purinas. No caso das células de melanoma, entretanto, os compostos parecem fazer parte do \"pool\" de nucleosídeos. A demonstração de que adutos produzidos por ataques radicalares em ribonucleosídeos e RNA são capazes de induzir proliferação celular, abre novas perspectivas para a compreensão do papel de radicais livres em processos carcinogênicos. / The ability of CS-substituted guanine ribonucleosides to induce B cell proliferation has been well documented in the literature. These compounds are analogues of adducts formed from free radical attack on ribonucleosides and RNA. Here we examined the proliferative properties of two of these radical adducts, 8-methylguanosine (8-MeGuo) and 8-oxo-7 ,8-dihydroguanosine (8-OxoGuo) and compared them with those of the well studied B cell mitogen, 8-bromoguanosine (8-BrGuo). 8-MeGuo and 8-OxoGuo were synthesized in yields of 28 and 55 %, respectively, and were characterized by UV, NMR and CG-MS. Their effects upon [3H] thymidine uptake by Swiss mice splenocytes, mouse embryo 3T3 (A31) fibroblasts and mouse B16F10 melanocytes were examined. Both guanosine radical adducts were shown to increase [3H] thymidine uptake by mice splenocytes but displayed selectivity in regard to continuous cell lines. 8-MeGuo acted upon 3T3(A31) fibroblasts whereas 8-OxoGuo acted upon B16F10 melanocytes. The non physiological analogue 8-BrGuo acted upon all tested cells. Parallel experiments of cell counting, cytotoxicity, and cell sorting indicated that DNA synthesis induced by the C8-substituted guanosines reflected cell growth. It is proposed that the compounds act intracellularly because their proliferative effects were blocked in the presence of a nucleoside transport inhibitor but were not inhibited by an antagonist of the A2 purine receptor. The obtained results, taken together with data from the literature suggest that in the case of 3T3 (A31) fibroblasts and mice splenocytes the proliferative effects of the compounds are not dependent on metabolism through purine salvage pathways. In the case of melanocytes, however, the compounds are likely to become part of the purine nucleoside pool. The demonstration that adducts produced by free radical attack on ribonucleosides and RNA are able to induce cell proliferation opens new perspectives for the understanding of free radical mediated carcinogenesis.