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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
51

Die Wirkung von Desipramin an kardialen Gap Junctions unter ischämischen Bedingungen: Die Wirkung von Desipramin an kardialen Gap Junctions unter ischämischen Bedingungen

Dietze, Anna 29 November 2016 (has links)
Kardiovaskuläre Erkrankungen in Deutschland führen die Todesursachenstatistik an (19,1 % 2013) und verursachen die höchsten Krankheitskosten (14,5 % 2008) (Statistisches Bundesamt, 2015a,b). Im Rahmen von ischämischen Ereignissen am Herzen kann es zu Rhythmusstörungen kommen. In der Therapie dieser Störungen werden traditionell klassische Antiarrhythmika mit Wirkort Ionenkanal eingesetzt, welche jedoch stets ein proarrhythmisches Potenzial aufweisen. Im Fokus der Forschung der letzten Jahre stehen deswegen Peptide wie AAP10 (Antiarrhythmisches Peptid 10), welche direkt an den Gap Junctions ansetzen. In Radioligandenbindungsstudien konnte gezeigt werden, dass Desipramin AAP10 von seinem Rezeptor verdrängen kann. In der vorliegenden Arbeit wurde der Einfluss von Desipramin auf die Gap Junction-Leitfähigkeit in adulten humanen atrialen Kardiomyozyten bestimmt (Jozwiak 2012). Die Bestimmung der Leitfähigkeit erfolgte durch die Technik des Double-Cell-Voltage-Clamp. Es konnte gezeigt werden, dass Desipramin die elektrische Kopplung in humanen Kardiomyozyten, welche vorab durch CO2-induzierte Azidose partiell entkoppelt wurden, erhöht. Weiterhin wurde in der Mapping-Analyse mit dem Langendorff-System gezeigt, dass Desipramin in ischämischen Gebieten am ganzen Kaninchenherzen eine Reduktion der Homogenität und eine Steigerung der Dispersion verhindern kann. In anschließend hergestellten Western Blots aus Gewebeproben derselben Kaninchenherzen ließ sich eine verminderte Dephosphorylierung von Connexin 43 in ischämischen Gebieten unter Desipramin nachweisen. Ebenso vermag Desipramin eine Lateralisierung des Connexin 43 entlang der Zellmembran zu verhindern. Die Ergebnisse zeigen, dass Desipramin die Wahrscheinlichkeit für das Auftreten von Herzrhythmusstörungen unter ischämischen Bedingungen signifikant verringern und damit möglicherweise zur Senkung der Morbidität und Mortalität von Herzkreislauferkrankungen beitragen kann.
52

Tarpląstelinio sąveikavimo imitacinio modelio optimizavimas ir tyrimas / Optimization of cell gap junction simulation model

Žukauskas, Algirdas, Lukšys, Nerijus 26 August 2010 (has links)
Darbe yra nagrinėjama tarpląstelinių plyšinių jungčių modeliavimo sistema (GJM – Gap Juncion Model, sukurta N. Paulausko - Kauno technologijos universiteto, informatikos fakulteto magistrantas). Pagrindinis tyrimo objektas yra optimizavimo uždavinys. Viename iš sistemos modulių, pasinaudojant globalaus optimizavimo metodais, yra ieškoma modelio parametrų, su kuriais modelio ir realių eksperimentų (gautų iš sistemos užsakovų Niujorko, Yeshiva universiteto, Alberto Einšteino medicinos koledžo laboratorijos (prof. Felikso Bukausko)) rezultatai skirtųsi minimaliai arba sutaptų. Šiuo atveju yra modeliuojama tarpląstelinių plyšinių jungčių laidumo priklausomybė nuo įtampos t.y imituojami elektro-fiziologiniai procesai. Optimizuojant modelio parametrų paiešką, darbe buvo surinkti rezultatai (atliko Nerijus Lukšys), modeliuojant su skirtingu skaičiumi iteracijų bei parenkant skirtingus optimizavimo metodus, realizuotus kitoje sistemoje. Buvo konsultuojamasi su akademiku habil. dr. prof. Jonu Mockumi. Iš gautų rezultatų įvertinamos metodų silpnosios ir stipriosios pusės bei jų pritaikymas Grid sistemai. Darbo tikslas, remiantis analizės rezultatais, realizuoti modelio parametrų paiešką Grid sistemoje (atliko Algirdas Žukauskas), panaudojant kelis optimizavimo metodus bei palyginti gautus rezultatus. / In this research we analyze optimization of cells gap junctions simulation model (GJM – Gap Junction Model, designed by N. Paulauskas – Kaunas University of Technology student). The main object of study is the optimization problem. In one module of the system, using global optimization methods, is looking for the model parameters to which the model and real experiments (obtained from the New York, Yeshiva University, Albert Einstein College of Medicine Laboratory (prof. Felikso Bukausko)) results differ minimally or overlap. In this case, we are simulating cells gap junction voltage dependence of conductivity (simulating electro-physiological processes). Optimizing the model parameters of the search were collected at the results of simulation with different number of iterations (solved by Nerijus Lukšys), and the choice of different optimization methods, realized in another system. There was consulting with academic habil. dr. prof. Jonas Mockus. The results showed methods weak and strong points and their application in Grid systems. The purpose of this problem was to implement gap junction simulation model on the Grid system (solved by Algirdas Žukauskas). Use several optimization methods and compare the results.
53

Gap junction enhancer as an anti-cancer agent via GJIC-independent and -dependent pathways

Ding, Ying January 1900 (has links)
Doctor of Philosophy / Department of Biochemistry and Molecular Biophysics / Thu Annelise Nguyen / Gap junctions (GJ) are intercellular channels connecting adjacent cells, allowing small molecules to transport between cells, thereby maintaining all homeostasis. Loss of gap junctional intercellular communication (GJIC) and/or connexins, the gap junction proteins, is a hallmark of cancer. Restoration of GJIC and/or increase of connexin expression have been related to the reduction of tumorigenesis. Connexins have been reported as tumor suppressors due to both GJIC-independent and -dependent mechanisms. Therefore, development of effective agents or methods to enhance GJIC and restore connexin expression in cancer cells is a new strategy in cancer treatment. PQ1, 6-Methoxy-8-[(3-aminopropyl)amino]-4-methyl-5-(3-trifluoromethyl-phenyloxy)quinoline, has been demonstrated to increase GJIC, restore connexin expression, and exert anti-cancer effects on T47D breast cancer cells. Studies of apoptotic pathways showed that PQ1 activated both extrinsic and intrinsic apoptotic pathways, indicating that PQ1 exerts its anti-cancer effects via a GJIC-independent mechanism through the induction of apoptosis. Combinational treatment of PQ1 and cisplatin showed that PQ1 counteracted cisplatin-induced inhibition of GJIC and reduction of connexin expression, thereby increasing the efficacy of cisplatin in T47D cancer cells via a GJIC-dependent mechanism. Further studies of drug distribution and toxicity revealed that administration of PQ1 by oral gavage can be achieved with low toxicity to normal vital organs. All the results suggest that PQ1, a gap junction enhancer, can function as an anti-cancer agent and potentiate the efficacy of antineoplastic drugs via both GJIC-independent and -dependent pathways.
54

Carcinogênese induzida por 7,12-dimetilbenzantraceno em camundongos selvagens e geneticamente modificados com deleção em um dos alelos do gene da conexina 43 / Carcinogenesis induced by 7,12-Dimethylbenzanthracene in mice genetically modified with deletion in one allele of the connexin 43 gene

Oliveira, Krishna Düro de 19 August 2011 (has links)
O papel das junções intercelulares comunicantes do tipo gap e das proteínas que as compõem, as conexinas, tem sido alvo de numerosos estudos no campo da oncologia. Com a finalidade de compreender melhor os mecanismos moleculares envolvidos no processo carcinogênico e desenvolver novas armas contra o câncer, estes estudos têm se mostrado promissores, porém com muitas perguntas ainda a serem respondidas. Com o objetivo de avaliar a interferência da conexina 43 no processo carcinogênico, administramos o carcinógeno DMBA, um hidrocarboneto aromático policíclico, nas doses hebdomadárias de 1 mg durante 9 semanas, à camundongos BALB/c geneticamente modificados heterozigotos para a conexina 43 (Cx43+/-) e wild-type (Cx43+/+). O desenvolvimento de neoplasias ocorreu em 100% dos animais que receberam DMBA, porém de forma variável quanto ao tempo, tipo e número de neoplasias. No total, 6 tipos neoplásicos foram observados, incluindo neoplasias mamária, linfoma, pulmonar, gástrica, cutânea e ovariana, nesta ordem de prevalência. Com relação às neoplasias mamárias, as mamas abdominais foram as mais acometidas e o adenoacantoma foi o tipo histológico mais comum. No pulmão, estômago e pele, o tipo neoplásico mais comum em cada um foi, respectivamente, adenocarcinoma alveolar papilar, carcinoma de células escamosas e carcinoma de células escamosas queratinizante. Foi observada diferença estatística significante na incidência de tumores ovarianos, entre os grupos Cx43+/- e Cx43+/-, com maior incidência em animais Cx43+/-, indicando interferência da Cx43 neste processo carcinogênico. Apenas os animais Cx43+/- desenvolveram este tipo neoplásico, o qual foi representado exclusivamente por tumores da célula da granulosa. Não houve diferença estatística significante na incidência dos demais tumores, embora, em números absolutos, a incidência de quase todas, à exceção das neoplasias cutâneas, tenha sido maior nos Cx43+/-. O mesmo se repetiu com relação ao desenvolvimento de metástases, cujo fenótipo foi observado apenas em neoplasias mamárias e gástricas. A utilização de doses elevadas (9mg) de DMBA parece interferir na resposta, mais notadamente a pulmonar. As conexinas atuam de forma complexa e variável entre os diferentes tumores e entendimento da relação das conexinas com o câncer depende do entendimento molecular do controle da expressão das conexinas. Com este trabalho esperamos contribuir para evolução dos estudos relativos ao seu papel no processo carcinogênico e, desta forma, auxiliar no desenvolvimento de meios de previnir e combater o câncer. / The role of the intercellular communication of gap junctions and of the proteins that form these junctions, the connexins, has been the subject of numerous studies in the field of oncology. In order to better understand the molecular mechanisms involved in the carcinogenic process and develop new weapons against cancer, these studies have shown promising, but with many questions still to be answered. Aiming to evaluate the interference connexin 43 in the carcinogenic process the carcinogen DMBA, one aromatic hydrocarbon polycyclic, was administered to genetically modified BALB;c mice heterozygous for the connexin 43 (Cx43 +/-) and wild-type (Cx43 +/+). The development of cancer occurred in 100% of animals receiving DMBA, but in different timing, types and number of tumors. In total, six types of neoplasm were observed, including breast, lymphoma, lung, gastric, skin and ovarian cancers, in that order of prevalence. Regarding breast cancer, abdominal breasts were the most affected and adenoacanthoma was the most common histological type. In the lung, stomach and skin, the most common tumor type in each was, respectively, papillary alveolar adenocarcinoma, squamous cell carcinoma and keratinizing squamous cell carcinoma. There was statistically significant difference in the incidence of ovarian tumors among groups Cx43 + / - and Cx43 + / -, indicating interference of the expression of Cx43 +/- in the carcinogenic process. Only animals of the Cx43 + / - developed this tumor type, which was represented exclusively by granulosa cell tumors. There was no statistically significant difference in the incidence of other tumors, although in absolute numbers, the incidence of almost all, except for skin cancers, was higher in Cx43 + / -. The same was repeated with respect to the development of metastases, wereas observed only in breast and gastric cancers. The use of high doses (9 mg) of DMBA appears to interfere with the carcinogenic response, most notably in the lung. Connexins act in complex and variable ways among different tumors and understanding of the relationship of connexins in cancer depends on understanding the molecular control of expression of connexins. With this work we hope to contribute to the development of studies about role of connexins in the carcinogenic process and thus help in developing ways to prevent and fight cancer.
55

Carcinogênese induzida por 7,12-dimetilbenzantraceno em camundongos selvagens e geneticamente modificados com deleção em um dos alelos do gene da conexina 43 / Carcinogenesis induced by 7,12-Dimethylbenzanthracene in mice genetically modified with deletion in one allele of the connexin 43 gene

Krishna Düro de Oliveira 19 August 2011 (has links)
O papel das junções intercelulares comunicantes do tipo gap e das proteínas que as compõem, as conexinas, tem sido alvo de numerosos estudos no campo da oncologia. Com a finalidade de compreender melhor os mecanismos moleculares envolvidos no processo carcinogênico e desenvolver novas armas contra o câncer, estes estudos têm se mostrado promissores, porém com muitas perguntas ainda a serem respondidas. Com o objetivo de avaliar a interferência da conexina 43 no processo carcinogênico, administramos o carcinógeno DMBA, um hidrocarboneto aromático policíclico, nas doses hebdomadárias de 1 mg durante 9 semanas, à camundongos BALB/c geneticamente modificados heterozigotos para a conexina 43 (Cx43+/-) e wild-type (Cx43+/+). O desenvolvimento de neoplasias ocorreu em 100% dos animais que receberam DMBA, porém de forma variável quanto ao tempo, tipo e número de neoplasias. No total, 6 tipos neoplásicos foram observados, incluindo neoplasias mamária, linfoma, pulmonar, gástrica, cutânea e ovariana, nesta ordem de prevalência. Com relação às neoplasias mamárias, as mamas abdominais foram as mais acometidas e o adenoacantoma foi o tipo histológico mais comum. No pulmão, estômago e pele, o tipo neoplásico mais comum em cada um foi, respectivamente, adenocarcinoma alveolar papilar, carcinoma de células escamosas e carcinoma de células escamosas queratinizante. Foi observada diferença estatística significante na incidência de tumores ovarianos, entre os grupos Cx43+/- e Cx43+/-, com maior incidência em animais Cx43+/-, indicando interferência da Cx43 neste processo carcinogênico. Apenas os animais Cx43+/- desenvolveram este tipo neoplásico, o qual foi representado exclusivamente por tumores da célula da granulosa. Não houve diferença estatística significante na incidência dos demais tumores, embora, em números absolutos, a incidência de quase todas, à exceção das neoplasias cutâneas, tenha sido maior nos Cx43+/-. O mesmo se repetiu com relação ao desenvolvimento de metástases, cujo fenótipo foi observado apenas em neoplasias mamárias e gástricas. A utilização de doses elevadas (9mg) de DMBA parece interferir na resposta, mais notadamente a pulmonar. As conexinas atuam de forma complexa e variável entre os diferentes tumores e entendimento da relação das conexinas com o câncer depende do entendimento molecular do controle da expressão das conexinas. Com este trabalho esperamos contribuir para evolução dos estudos relativos ao seu papel no processo carcinogênico e, desta forma, auxiliar no desenvolvimento de meios de previnir e combater o câncer. / The role of the intercellular communication of gap junctions and of the proteins that form these junctions, the connexins, has been the subject of numerous studies in the field of oncology. In order to better understand the molecular mechanisms involved in the carcinogenic process and develop new weapons against cancer, these studies have shown promising, but with many questions still to be answered. Aiming to evaluate the interference connexin 43 in the carcinogenic process the carcinogen DMBA, one aromatic hydrocarbon polycyclic, was administered to genetically modified BALB;c mice heterozygous for the connexin 43 (Cx43 +/-) and wild-type (Cx43 +/+). The development of cancer occurred in 100% of animals receiving DMBA, but in different timing, types and number of tumors. In total, six types of neoplasm were observed, including breast, lymphoma, lung, gastric, skin and ovarian cancers, in that order of prevalence. Regarding breast cancer, abdominal breasts were the most affected and adenoacanthoma was the most common histological type. In the lung, stomach and skin, the most common tumor type in each was, respectively, papillary alveolar adenocarcinoma, squamous cell carcinoma and keratinizing squamous cell carcinoma. There was statistically significant difference in the incidence of ovarian tumors among groups Cx43 + / - and Cx43 + / -, indicating interference of the expression of Cx43 +/- in the carcinogenic process. Only animals of the Cx43 + / - developed this tumor type, which was represented exclusively by granulosa cell tumors. There was no statistically significant difference in the incidence of other tumors, although in absolute numbers, the incidence of almost all, except for skin cancers, was higher in Cx43 + / -. The same was repeated with respect to the development of metastases, wereas observed only in breast and gastric cancers. The use of high doses (9 mg) of DMBA appears to interfere with the carcinogenic response, most notably in the lung. Connexins act in complex and variable ways among different tumors and understanding of the relationship of connexins in cancer depends on understanding the molecular control of expression of connexins. With this work we hope to contribute to the development of studies about role of connexins in the carcinogenic process and thus help in developing ways to prevent and fight cancer.
56

Factors affecting the developmental competence of pig oocytes matured in vitro.

Bagg, Melanie Anna January 2007 (has links)
Pre-pubertal pig oocytes possess lower developmental competence than those from adult pigs following in vitro maturation (IVM). Previous studies have demonstrated that exposure of pre-pubertal oocytes to 1 mM dibutyryl cAMP (dbcAMP), a membrane permeable cyclic adenosine monophosphate (cAMP) analogue, for the first 20 h of IVM improves the rate of blastocyst development. Developmental competence of in vitro matured pig oocytes has been reported to increase with increasing follicle size. In this thesis, experiments were carried out using pre-pubertal and adult pig oocytes to investigate the relationship between donor age, intra-oocyte cAMP level and follicle size in terms of oocyte maturation and developmental competence. These experiments demonstrated that, while ovarian, follicular and oocyte morphology are immediately altered with the onset of puberty, pre-pubertal oocytes must be exposed to more than the first oestrous cycle to achieve improved developmental competence in vitro. Later experiments demonstrated that pre-pubertal oocytes accumulate less cAMP during IVM, undergo more rapid meiotic progression and display reduced rates of blastocyst development compared to in vitro matured adult oocytes. Treatment with dbcAMP for 22 h IVM increased the cAMP content of pre-pubertal oocytes, slowed meiotic progression during IVM and improved the rate of blastocyst formation. While the cAMP concentration of pre-pubertal oocytes was increased to levels similar to that of adult oocytes, rates of blastocyst formation remained lower, suggesting that additional factor(s) are required for oocyte maturation. This thesis also examined the follicle size cohorts that make up the 3-8 mm aspiration range on pig ovaries. The surface of pre-pubertal ovaries contained around double the number of 3 mm follicles compared with adult ovaries. Blastocyst development of pre-pubertal oocytes increased with increasing follicle size and was highest using oocytes from 5-8 mm follicles, while adult oocytes from all follicle size cohorts displayed similar high rates of blastocyst formation. The interaction between follicle size and cAMP content in pre-pubertal oocytes was examined next. Cumulus-oocyte complexes (COCs) from 3 mm follicles accumulated less intra-oocyte and inter-COC cAMP and displayed reduced cumulus expansion compared with COCs from 5-8 mm follicles. While dbcAMP treatment increased the cAMP content of oocytes from 3 mm follicles, it had no effect on the cAMP content of the whole COC. These findings suggest that inadequate levels of intra-oocyte cAMP during IVM contribute to the low developmental competence of pre-pubertal oocytes from 3 mm follicles, suggesting that cAMP transfer, production or degradation processes are incomplete. Analysis of steroid content from different follicle size cohorts revealed that the progesterone content of prepubertal follicular fluid (FF) increased with increasing follicle size, yet overall was lower than that of adults. This suggests that differences may exist in the gonadotropinstimulated steroidogenic activity of granulosa cells of pre-pubertal COCs from different follicle sizes. Since progesterone secretion did not differ between pre-pubertal and adult COCs, it appears that the downstream pathway from the granulosa cell response rather than the actual quantity of progesterone is important for subsequent maturation processes. These studies then examined gap junction communication (GJC) within the pre-pubertal COC during IVM to examine whether the positive effects of increasing follicle size and dbcAMP on intra-oocyte cAMP levels relates to improved cAMP transfer between the cumulus cell layer and oocyte. Cumulus cell-oocyte GJC during IVM was maintained for a longer period in pre-pubertal COCs from 3 mm follicles than in those from 5-8 mm follicles. Treatment with dbcAMP had minimal effect on GJC in either COC type, thus the dbcAMP-induced increase in intra-oocyte cAMP levels appears independent of GJC. Differences in GJC during IVM together with the COCs ability to increase intraoocyte cAMP levels during IVM, suggests that differences may exist in the quantity of gonadotropin receptors, which are responsible for cAMP production, within the cumulus layer of COCs from 3 mm compared with 5-8 mm follicles. In conclusion, this thesis has demonstrated that an increase in intra-oocyte cAMP is necessary during maturation for completion and synchronisation of maturation and high developmental competence of the pig oocyte. Comparison of 3, 4 and 5-8 mm follicle sizes in the pre-pubertal pig, as described here, provides an excellent model for further investigation into the role of cAMP and the other factors required for co-ordination of oocyte nuclear and cytoplasmic maturation and subsequent embryo production. / http://proxy.library.adelaide.edu.au/login?url= http://library.adelaide.edu.au/cgi-bin/Pwebrecon.cgi?BBID=1297309 / Thesis (Ph.D.) -- School of Paediatrics and Reproductive Health, 2007
57

Regulation of Connexin40 Gap Junctions

Sheela, Thomas Vinaya 31 August 2008 (has links)
Gap junctions provide direct electrical and biochemical communication between cardiomyocytes in the heart. Connexin40 (Cx40) is the major connexin in the atria of the heart and little is known regarding its regulation. Thus, the goal was to investigate the regulation of Cx40 in both physiological and pathophysiological conditions. The first objective of this thesis was to determine whether Cx40 gap junctions were regulated by â-adrenergic receptor activation. Cx40 has previously been shown to be acutely activated by cAMP, this cAMP-induced increase in Cx40-mediated cell-to-cell dye transfer has been shown to be effected through the â-adrenergic receptor-adenylyl cyclase- Protein Kinase A (PKA) pathway in Cx40-transfected HeLa cells. The second objective of this thesis was to determine whether Cx40 gap junctions were regulated by intracellular Ca2+ concentration ([Ca2+]i ). [Ca2+]i was increased by addition of the ionophore ionomycin and elevating extracellular calcium [Ca2+]o from 1.8 mM to 21.8 mM. This resulted in an elevation of [Ca2+]i and effected an inhibition of Cx40-mediated cell-to-cell dye transfer (IC50 of 500 ± 0.72 nM) which was Calmodulin-dependent. The third objective of this thesis was to determine whether Cx40 gap junctions were regulated by ischemia. Inducing ischemia chemically by inhibiting the electron transport chain with sodium cyanide and glycolysis with iodoacetate and 2-deoxyglucose effected an inhibition of Cx40-mediated cell-to-cell dye transfer that was shown to be Calmodulin dependent. The main conclusions of this thesis were: (1) â-adrenergic receptor activation increases Cx40-mediated cell-to-cell dye transfer which requires the activation of PKA; (2) A sustained elevation in [Ca2+]i causes a partial inhibition of Cx40 gap junction-mediated cell-to-cell dye transfer which was Ca2+-and Calmodulin dependent; (3) Chemical ischemia causes a partial inhibition of Cx40 gap junction-mediated cell-to-cell dye transfer which was shown to be Calmodulin-dependent.
58

Exploring the Role of Calcium Ions in Biological Systems by Computational Prediction and Protein Engineering

Zhou, Yubin 28 November 2007 (has links)
Ca2+, a signal for death and life, is closely involved in the regulation of numerous important cellular events. Ca2+ carries out its function through its binding to Ca2+-receptors or Ca2+-binding proteins. The EF-hand protein, with a helix-loop-helix Ca2+-binding motif, constitutes one of the largest protein families. To facilitate our understanding of the role of Ca2+ in biological systems (denoted as calciomics) using genomic information, an improved pattern search method (http://www.chemistry.gsu.edu/faculty/Yang/Calciomics.htm) for the identification of EF-hand and EF-like Ca2+-binding proteins was developed. This fast and robust method allows us to analyze putative EF-hand proteins at the genome-wide level and further visualize the evolutionary scenario of the EF-hand protein family. This prediction method further enables us to locate a putative viral EF-hand Ca2+-binding motif within the rubella virus nonstructural protease that cleaves the nonstructural protein precursor into two active replicase components. A novel grafting approach has been used to probe the metal-binding properties of this motif by engineering the predicted 12-residue Ca2+-coordinating loop into a non-Ca2+-binding scaffold protein, CD2 domain 1. Structural and conformational studies were further performed on a purified, bacterially-expressed NS protease minimal metal-binding domain spanning the Zn2+- and EF-hand Ca2+-binding motif. It was revealed that Ca2+ binding induced local conformational changes and increased thermal stability. Furthermore, functional studies were carried out using RUB infectious cDNA clone and replicon constructs. Our studies have shown that the Ca2+ binding loop played a structural role in the NS protease and was specifically required for optimal stability under physiological conditions. In addition, we have predicted and characterized a calmodulin-binding domain in the gap junction proteins connexin43 and connexin44. Peptides encompassing the CaM binding motifs were synthesized and their ability to bind CaM was determined using various biophysical approaches. Transient expression in HeLa cells of two mutant Cx43-EYFP constructs without the putative CaM-binding site eliminated the Ca2+-dependent inhibition of gap junction permeability. These results provide the first direct evidence that CaM binds to a specific region of the ubiquitous gap junction protein Cx43 and Cx44 in a Ca2+-dependent manner, providing a molecular basis for the well-characterized Ca2+-dependent inhibition of Cx43-containing gap junctions.
59

Dynamics and synchronization in biological excitable media

Xu, Jinshan 03 December 2012 (has links) (PDF)
This thesis investigates the origin of spontaneous activity in the uterus. This organ does not show any activity until shortly before delivery, where fast and efficient contractions are generated. The aim of this work is to provide insight into the origin of spontaneous oscillations and into the transition from asynchronous to synchronized activity in the pregnant uterus. One intriguing aspect in the uterus is the absence of any pacemaker cell. The organ is composed of muscular cells, which are excitable, and connective cells, whose behavior is purely passive; None of these cells, taken in isolation, spontaneously oscillates. We develop an hypothesis based on the observed strong increase in the electrical coupling between cells in the last days of pregnancy. The study is based on a mathematical model of excitable cells, coupled to each other on a regular lattice, and to a fluctuating number of passive cells, consistent with the known structure of the uterus. The two parameters of the model, the coupling between excitable cells, and between excitable and passive cells, grow during pregnancy.Using both a model based on measured electrophysiological properties, and a generic model of excitable cell, we demonstrate that spontaneous oscillations can appear when increasing the coupling coefficients, ultimately leading to coherent oscillations over the entire tissue. We study the transition towards a coherent regime, both numerically and semi-analytically, using the simple model of excitable cells. Last, we demonstrate that, the realistic model reproduces irregular action potential propagation patterns as well as the bursting behavior, observed in the in-vitro experiments.
60

Ląstelių plyšinės jungties modeliavimas naudojant Markovo procesus / Modelling of the gap junction cells using Markov processes

Vaičeliūnas, Saulius 04 November 2013 (has links)
Šiame darbe pateikiama ląstelių plyšinės jungties Markovo modelių sudarymo metodika, naudojant Markovo procesus, apimanti būsenų grafų generavimą, stacionariųjų tikimybių skaičiavimą ir plyšinės jungties laidumo priklausomybės nuo įtampos skaičiavimus. Darbe aprašomi skirtingi plyšinės jungties modeliai. Kiekvienas modelis turi savo koneksinų būsenų grafus, kuriais remiantis yra simuliuojama plyšinės jungties laidžio priklausomybė nuo įtampos. Kiekvienas koneksinas gali būti aprašomas dviejomis būsenomis: „O“ – atvira, „C“ - uždara ir trijomis būsenomis: „O“ – atvira, „C“ – uždara, „D“ – visiškai uždara. Remiantis sumodeliuotais modeliais, buvo sukurta programinė įranga leidžianti grafiškai pavaizduoti modelių būsenų grafus, simuliuoti modelius ir gauti simuliacijos rezultatus. Taipogi buvo realizuota programinės įrangos realizacija į kitas sistemas. / In this paper methology of composing Markov preocess models of gap junction cells is introduced. This methology contains state graphs generation, computing of stationary probabilities and computing of the conductance of the gap junction dependence on a voltage. In this paper different gap junction models are presented. Every model has it‘s own connexin state graphs, on which the conductance of the gap junction dependence on a voltage simulation is based. Every connexin can have two different state scenarios: first scenario where two connexin model is based on two states „O“ – open or „C“ – closed and second scenario where three connexin model is based on three states „O“ – open, „C“ – closed and „D“ – deep closed. The computer programs based on these models where created, which allows user graphically see the models state graphs, simulate models and get the needed results. Also these programs are integrated into more difficult systems and into other libraries.

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