Pentameric ligand-gated ion channels (pLGICs) are membrane-embedded receptors found extensively in pre- and post-synaptic membranes throughout the nervous system where they play an important role in neurotransmission. The function of the prototypic pLGIC, the nicotinic acetylcholine receptor (nAChR) is highly sensitive to changes in its lipid environment, while other pLGICs display varying lipid sensitivities. This thesis presents a multidisciplinary investigation into the features of the transmembrane domain (TMD) that determine the unique functional and physical traits of different pLGICs. Using two prokaryotic homologues of the nAChR, ELIC and GLIC, as models, I focus on the outermost, lipid-exposed α-helix, M4, which, despite being distant from the primary allosteric pathway coupling agonist binding to channel gating, exercises significant control over channel function. Here, I present evidence that M4 acts as a lipid sensor, detecting changes in the surrounding lipids and transmitting these changes to the channel pore via contacts with the adjacent TMD α-helices, M1 and M3, and/or with structures in the extracellular domain. Using ELIC and GLIC chimeras, I first show that the TMD is the main driver of pLGIC thermal stability. I then demonstrate that the M4 α-helices in each channel play different roles in channel maturation and function, which suggests a divergent evolutionary path. Following this, I show that the M4 C-terminus is essential to both maturation and function in GLIC, while in ELIC its role is less defined, again showcasing possible evolutionary differences. Building on these findings, I examined the role of aromatic residues at the M4 – M1/M3 interface, and found that they predictably determine the interactions between M4 and M1/M3. Notably, the addition of aromatic residues to enhance M4-M1/M3 interactions in ELIC promotes channel function, while the elimination of aromatic residues at the M4-M1/M3 interface in GLIC is detrimental to channel function. Furthermore, I show that these same aromatics alter the strength of pLGIC lipid sensing and the sensitivity to certain disease-causing mutations, both indicating that aromatic residues are key players in channel function, stability and modulation. Finally, I and my collaborators identified and characterized a novel desensitization-linked lipid binding site in ELIC. Extensive mutagenesis studies coupled with biophysical measurements allowed us to develop a model describing how lipid binding influences the rates of ELIC desensitization to shape the agonist-induced response.

Modification of Hodgkin and Huxley’s experimentally derived set of nonlinear differential equations was implemented to accurately simulate the action potential of the Hirudo Medicinalis’s Retzius cell in MATLAB under analogous conditions to those found in the Retzius cell environment. The voltage-gated sodium and potassium channel responses to changes in membrane potential, as experimentally determined by Hodgkin and Huxley, were manipulated to suit simulation parameters established by electrophysiological Retzius cell recordings. Application of this methodology permitted additional accurate simulation of the Hirudo Medicinalis’s P cell under analogous conditions to those found in the P cell environment. Further refinement of this technique should allow for the voltage-gated behavioral based simulation of action potential waveforms found in variety of neurons under simulation conditions analogous to the nerve cell environment.

The diploma thesis deals with the design of the water divider near Prostějov on the Romže River. Divider flows will be transferred into the Hloučela River. Within the thesis, hydraulic calculations of the side spillway were solved according to Bürgel, Pavlosky, Engels, Musterle, Kunštátský, Hager and energy solution methods in the Microsoft Excel spreadsheet and by using the HEC-RAS program as well. The calculations were compared to each other. Geometry of the relief water divider on the Romže River and the related buildings was designed based on the performed calculations. The required function of the relief object is guaranteed by manipulation of designed sluice gate. The study includes the text part with the calculations and the drawing part documenting the implementation of the designed measures.

KCNE peptides are a class of type I transmembrane ß-subunits that assemble with and modulate the gating and ion conducting properties of a variety of voltage-gated K+ channels. Accordingly, mutations that affect the assembly and trafficking of K+ channel/KCNE complexes give rise to disease. The cellular mechanisms that oversee KCNE peptide assembly with voltage-gated K+ channels have yet to be elucidated. In Chapter II, we show that KCNE1 peptides are retained in the early stages of the secretory pathway until they co-assemble with KCNQ1 K+ channel subunits. Co-assembly with KCNQ1 channel subunits mediates efficient forward trafficking of KCNE1 peptides through the biosynthetic pathway and results in cell surface expression. KCNE1 peptides possess two N-linked glycosylation sites on their extracellular N-termini. Progression of KCNE1 peptides through the secretory pathway can be visualized through maturation of N-glycans attached to KCNE1. In Chapter III, we examine the kinetics and efficiency of N-linked glycan addition to KCNE1 peptides. Mutations that prevent glycosylation of KCNE1 give rise to the disorders of arrhythmia and deafness. We show that KCNE1 acquires N-glycans co- and post-translationally. Mutations that prevent N-glycosylation at the co-translational site have a long range effect on the disruption of post-translational glycosylation and suggest a novel biogenic mechanism for disease. In Chapter IV, we determine the presence of an additional post-translational modification on KCNE1 peptides. We define specific residues as sites of attachment of this modification identified as sialylated O-glycans and show that it occurs in native cardiac tissues where KCNE1 plays a role in the maintenance of cardiac rhythm. Taken together, these observations demonstrate the importance of having correctly assembled K+ channel/KCNE complexes at the cell surface for their proper physiological function and define a role for the posttranslational modifications of KCNE peptides in the proper assembly and trafficking of K+ channel/KCNE complexes.

KCNQ1 is a homotetrameric voltage-gated potassium channel expressed in cardiomyocytes and epithelial tissues. However, currents arising from KCNQ1 have never been physiologically observed. KCNQ1 is able to provide the diverse potassium conductances required by these distinct cell types through coassembly with and modulation by type I transmembrane β-subunits of the KCNE gene family. KCNQ1-KCNE K+ channels play important physiological roles. In cardiac tissues the association of KCNQ1 with KCNE1 gives rise to IKs, the slow delayed outwardly rectifying potassium current. IKs is in part responsible for repolarizing heart muscle, and is therefore crucial in maintaining normal heart rhymicity. IKschannels help terminate each action potential and provide cardiac repolarization reserve. As such, mutations in either subunit can lead to Romano-Ward Syndrome or Jervell and Lange-Nielsen Syndrome, two forms of Q-T prolongation. In epithelial cells, KCNQ1-KCNE1, KCNQ1-KCNE2 and KCNQ1-KCNE3 give rise to potassium currents required for potassium recycling and secretion. These functions arise because the biophysical properties of KCNQ1 are always dramatically altered by KCNE co-expression. We wanted to understand how KCNE peptides are able to modulate KCNQ1. In Chapter II, we produce partial truncations of KCNE3 and demonstrate the transmembrane domain is necessary and sufficient for both assembly with and modulation of KCNQ1. Comparing these results with published results obtained from chimeric KCNE peptides and partial deletion mutants of KCNE1, we propose a bipartite modulation residing in KCNE peptides. Transmembrane modulation is either active (KCNE3) or permissive (KCNE1). Active transmembrane KCNE modulation masks juxtamembranous C-terminal modulation of KCNQ1, while permissive modulation allows C-terminal modulation of KCNQ1 to express. We test our hypothesis, and demonstrate C-terminal Long QT point mutants in KCNE1 can be masked by active trasnsmembrane modulation. Having confirmed the importance the C-terminus of KCNE1, we continue with two projects designed to elucidate KCNE1 C-terminal structure. In Chapter III we conduct an alanine-perturbation scan within the C-terminus. C-terminal KCNE1 alanine point mutations result in changes in the free energy for the KCNQ1-KCNE1 channel complex. High-impact point mutants cluster in an arrangement consistent with an alphahelical secondary structure, "kinked" by a single proline residue. In Chapter IV, we use oxidant-mediated disulfide bond formation between non-native cysteine residues to demonstrate amino acid side chains residing within the C-terminal domain of KCNE1 are close and juxtaposed to amino acid side chains on the cytoplasmic face of the KCNQ1 pore domain. Many of the amino acids identified as high impact through alanine perturbation correspond with residues identified as able to form disulfide bonds with KCNQ1. Taken together, we demonstrate that the interaction between the C-terminus of KCNE1 and the pore domain of KCNQ1 is required for the proper modulation of KCNQ1 by KCNE1, and by extension, normal IKs function and heart rhymicity.

Résumé : Au cours de ce travail, nous avons effectué une étude méthodologique concernant la synthèse d'azobenzènes tétrasubstitués en position ortho pour mieux comprendre les éléments affectant leurs synthèses, généralement inefficaces, et afin d'en améliorer les rendements. Nous avons conclu que l'inefficacité de cette synthèse est causée par des effets stéréoélectroniques : l’effet stérique du substituant en position ortho, qui s’ajoute à l’effet électronique du groupement en position para. Après différentes optimisations, nous avons réussi à synthétiser un azobenzène tétrachloré et un azobenzène tétrafluoré via un intermédiaire nitrosobenzène avec de bons rendements.Le dérivé tétrafluoro azobenzène a été ensuite fonctionnalisé en introduisant une chaîne alcyne terminée par un groupement maléimide afin de permettre sa fixation sur un résidu cystéine. Les propriétés physicochimiques très intéressantes (lumière verte d'irradiation,T1/2 = 72 jours, photostable) de cette pince ont été évaluées.Parallèlement, une synthèse efficace et pratique pour générer directement la fonction hydroxyle en ortho de l'azobenzène dans des conditions douces a été développée. Nous avons synthétisé plusieurs séries en faisant varier les substituants enpositions para ou/et en ortho afin d'étudier l'influence de ces subsituants sur la régiosélectivité de cette ortho-hydroxylation. L'équation de Jaffé et ses extensions ont donné une relation linéaire avec d'excellents coefficients de détermination R2.Enfin, les azophenols ont été évalués comme des détecteurs colorimétriques d'anions. Leurs caractéristiques ainsi que le mécanisme d'interaction ont été déterminés par une inspection visuelle, des mesures UV-Visible et des expériences de RMN. / Abstract : A methodological study on the synthesis of tetrasubstituted azobenzenes has been realized. We concluded that synthesis of multisubstitued azobenzene is hardly affected by the steric hindrance in ortho position and the electronic effect of para substituents.A tetrachloro and a tetrafluoro azobenzene have been synthesized in good yields, via nitrosobenzene intermediate. The tetrafluoro derivative was then functionalized with an alkyne chain containing a maleimide group for bioconjugation to cysteine residue. Its interesting photoisomerisation properties (green light of irradiation,1/2 = 72 days, photostable) were evaluated.We also developed a practical and effective method for direct ortho-hydroxylation of azobenzenes under mild conditions. The reaction showed a very good functional groups tolerance, leading to a wide range of original azophenols in satisfying to high yields.Through Hammett-Jaffé analyses, we presented a study that correlated electronic and steric perturbations induced by substituents nature to the regioselectivity of this direct hydroxylation process.Azophenols were finally evaluated as anion sensors. Anion sensing characteristics as well as interaction mechnism were determined using visual inspection, UV-Vis and NMR spectrocopy.

Les systèmes d'imagerie à rayons X (RX) sont des appareils volumineux et contraignants en termes de contrôle du faisceau. L'industrie des tubes électroniques est donc à la recherche de solutions pour assurer la stabilité du courant tout en permettant la miniaturisation du système.Ce travail opte pour l'amélioration de la source d'électrons, en remplaçant l'émission thermoïonique historique par l'émission de champ. En particulier, les cathodes froides à base de nanotubes de carbone possèdent l'avantage de pouvoir délivrer de forts courants (>1A/cm^2), tout en ayant un faible temps de réponse.A travers le développement d'une structure innovante de cathodes à nanotubes de carbone à grille intégrée, l'objectif de cette étude est de réaliser des sources commutables et régulées, pour des sources de rayons X miniatures, portables ou polyvalentes.La modélisation électrostatique de la nouvelle structure a conduit à la fabrication de cathodes à grille optimisées, sur lesquelles est cru un réseau vertical de nanotubes de carbone. L'analyse de défaillance permet finalement d'obtenir des dispositifs isolés fiables. Leur caractérisation en émission de champ indique des performances de modulation de courant inégalées, de l'ordre de 10^6 pour +/-40V de polarisation de grille. La régulation du courant a également été démontrée avec l'obtention d'une stabilité à 0,02% sur 100 h.Pour pallier les limitations rencontrées (courant de fuite et croissance parasite), une structure de grille enterrée a été proposée avec succès, ainsi qu'une nouvelle méthode de fabrication d'émetteurs courts et fins. Ces cathodes fonctionnelles ont finalement été intégrées en tube à rayons X et ont montré pour la première fois une modulation de courant de 2000 à une haute tension fixe de 60 kV. / This work chooses to improve the electron source by replacing thermionic emission with field emission. More especially, carbon nanotubes based cold cathodes stand out by their ability to supply high currents (>1A/cm^2) while responding fast.Through the development of an innovative structure of in-plane gated carbon nanotube based cathode, this study aims at making switchable and regulated sources for miniature, portable or polyvalent X-rays sources.The electrostatic modelling of the new structure led to the fabrication of optimized gated cathodes, where a vertically aligned array of carbon nanotubes is grown. Default analysis allows to get reliable insulated devices.Field emission characterization shows unprecedented current modulation of 10^6 at +/-40V bias voltage. Current regulation is also achieved with a stability of 0.02% over 100 h.Another structure with a burried gate electrode was designed to successfully cope with leak current and parasitic growth. A new way of growing short and thin nanotubes was tackled.Finally, gated cathodes were integrated in a compact X-ray tube and showed a current modulation of 2000 at a high voltage of 60 kV.

Indiana University-Purdue University Indianapolis (IUPUI) / The voltage-gated sodium channel Nav1.7 has gained traction as a pain target with recognition that loss-of-function mutations in SCN9A, the gene encoding Nav1.7, are associated with congenital insensitivity to pain, whereas gain-of-function mutations produce distinct pain syndromes due to increased Nav1.7 activity. Selective inhibition of Nav1.7 is fundamental to modulating pain via this channel. Understanding the regulation of Nav1.7 at the cellular and molecular level is critical for advancing better therapeutics for pain. Although trafficking of Nav1.7 remains poorly understood, recent studies have begun to investigate post-translational modifications of Navs and/or auxiliary subunits as well as protein-protein interactions as Nav-trafficking mechanisms. Here, I tested if post-translational modifications of a novel Nav1.7-interacting protein, the axonal collapsin response mediator protein 2 (CRMP2) by small ubiquitin-like modifier (SUMO) and phosphorylation could affect Nav trafficking and function. Expression of a CRMP2 SUMOylation incompetent mutant (CRMP2-K374A) in neuronal model CAD cells, which express predominantly Nav1.7 currents, led to a significant reduction in huwentoxin-IV-sensitive Nav1.7 currents. Increasing deSUMOylation with sentrin/SUMO-specific protease SENP1 or SENP2 in wildtype CRMP2-expressing CAD cells decreased Nav1.7 currents. Consistent with reduced current density, biotinylation revealed significant reduction in surface Nav1.7 levels of CAD cells expressing CRMP2-K374A or SENP proteins. Diminution of Nav1.7 sodium current was recapitulated in sensory neurons expressing CRMP2-K374A. Because CRMP2 functions are regulated by its phosphorylation state, I next investigated possible interplay between phosphorylation and SUMOylation of CRMP2 on Nav1.7. Phosphorylation of CRMP2 by cyclin dependent kinase 5 (Cdk5) was necessary for maintaining Nav1.7 surface expression and current density whereas phosphorylation by Fyn kinase reduced CRMP2 SUMOylation and Nav1.7 current density. Binding to Nav1.7 was decreased following (i) loss of CRMP2 SUMOylation, (ii) loss of CRMP2 phosphorylation by Cdk5, or (iii) gain of CRMP2 phosphorylation by Fyn. Altering CRMP2 modification events simultaneously was not synergistic in reducing Nav1.7 currents, suggesting that Nav1.7 co-opts multiple CRMP2 modifications for regulatory control of this channel. Loss of either CRMP2 SUMOylation or Cdk5 phosphorylation triggered Nav1.7 internalization involving E3 ubiquitin ligase Nedd4-2 as well as endocytosis adaptor proteins Numb and Eps15. Collectively, my findings identify a novel mechanism for regulation of Nav1.7.

No description available.

Pentameric ligand-gated ion channels (pLGICs) are membrane receptors that play a crucial role in every living organism. The pLGIC protein structure forms a pore through the membrane of a cell that can let specific ions pass through, upon activation by endogenous agonists. pLGICs are allosterically modulated by ligands binding at allosteric sites, that either stabilize a certain conformation or change the binding affinity of the endogenous agonist. However, much remains unknown about the exact way in which these modulators bind to and affect pLGICs. An increased understanding could help in the search for novel and/or more effective target drugs. With this masters thesis, I hope to contribute by investigating the modulatory effect of ethanol on the bacterial Gloeobacter ligand-gated ion channel (GLIC). This has been done by performing oocyte electrophysiology recordings and analysis of molecular dynamics simulations, both with and without ethanol, and of four separate variants of GLIC that are either potentiated or inhibited by ethanol. Two possible allosteric sites were discovered in a transmembraneintrasubunit pocket: a potentiating allosteric site close to the M2 helix and residue V242, as well as an inhibitory membrane- and M4 helix-close intrasubunit site. Finally, evidence was found that could support a previously suggested inhibitory allosteric site in the pore around the 9’ hydrophobic gate. / Pentameriska ligandstyrda jonkanaler (pLGICs) är membranreceptorer som utgör vitala delar av varje levande organism. pLGICs proteinstruktur formar en por genom cellmembranet, som kan släppa igenom specifika joner efter aktivering av endogena agonister. pLGICs är allostermodulerade av ligander som binder vid allostera säten och som därigenom antingen stabiliserar en viss form eller förändrar den endogena agonistens bindningsstyrka. Emellertid saknas fortfarande mycket kunskap på detaljnivå om hur dessa modulatorer binder sig till och påverkar kanalerna. En ökad förståelse skulle hjälpa forskningen efter nya och/eller mer effektiva mediciner. Mitt examensarbetehoppas bidra genom att studera hur etanol modulerar den bakteriella ligandstyrda jonkanalen GLIC från Gloeobacter. Det har gjorts genom elektrofysiologimätningar på oocyter och analys av molekulärdynamiksimuleringar, båda av fyra olika GLIC-varianter, som antingen potentieras eller hämmas av etanol, och med eller utan etanol. Två allostera säten upptäcktes i det transmembrana intrasubenhetområdet: ett säte för potentiering nära M2 helixen och aminosyran V242, och ett hämmande säte nära membranet och helix M4. Slutligen hittades tecken som kan styrka existensen av det tidigare föreslagna hämmande allostera sätet i poren kring den hydrophoba porten.