Maize is the staple food for the majority of Tanzanians. However, maize production in the Southern highlands of Tanzania (SHT) is highly reduced by gray leaf spot disease (GLS) caused by the fungus Cercospora zea maydis. GLS reduces grain yield, kernel and silage quality. The most common GLS control methods in Tanzania include amongst others; fungicides, crop rotation, field sanitation, host resistance. These methods except host resistance are, however, either expensive or less effective or unsafe to the environment. Furthermore, conventional breeding strategies are not very effective for traits, which are lowly inherited such as GLS resistance. Lastly, to date there are few GLS resistant commercial hybrids in SHT. Thus, this study aimed to produce more commercial GLS resistant hybrids, increase farmers’ hybrid choices of growing genetically different GLS insensitive hybrids, which will also provide a constant supply of GLS resistant maize cultivars in case of GLS resistance breakdown due to new GLS pathotypes. This research combined conventional breeding with molecular technologies to increase the efficacy of selecting GLS resistant hybrids and assist breeders in predicting best inbred combinations for commercial hybrid production. Studies conducted to meet the main aims were on; the prediction of best line combiners and heterosis in Tanzanian maize breeding lines through the use of amplified fragment length polymorphism, (AFLP), an association of AFLPs and the performance of phenotypic traits in maize, evaluation of maize hybrids for gray leaf spot resistance in multienvironments and finally a preliminary study on gray leaf spot PCR-based marker development with the long term objective of implementing cleaved amplified polymorphic markers (CAPS) in a marker assisted selection (MAS) strategy in the SHT maize breeding programme. Results from the study revealed that pairwise GD (genetic distance) of the lines varied from a GD of 0.13 to 0.5. High coancentry coefficients were exhibited by these lines. Joint data analyses showed that there were tighter associations between line GD and F1 traits or MPH in the intergroup than in the intragroup crosses. Combined analyses revealed that hybrids 48, 90 and 45 recorded higher stable yields and consistently low GLS scores in multienvironments. Fifteen CAPS marker bands were identified that are putatively linked to the GLS resistant genes. In summary, it was noted that strong selection during inbreeding programs should be avoided as it reduces germplasm variability. Local landraces/varieties can be improved by introgressing desirable genes into them. AFLP marker system could be effectively used for inbred genetic diversity studies in Tanzania. Intergroup crosses with high GD-MPH should be the main target for commercial hybrid production but field testing of them is inevitable to confirm their yielding potentials. Intergroups and intragroup crosses with low GD-MPH should be discarded to avoid field costs. Better F1 hybrid performance predictions can be achieved by integrating inbred GD and F1 phenotypic data. Hybrids with low GLS/high GLS resistance could be used to produce other breeding populations. Hybrids 45, 48 and 90 can be commercially preleased. Lastly a study to characterize the GLS fungus in the SHT is imperative since information on virulence of isolates is needed for long term breeding strategies against the fungus. Finally, the SHT maize germplasm has potential GLS resistant inbred lines which could be used in the deployment of genes to susceptible lines and in the development of commercial GLS resistant hybrids/open pollinated varieties/doubled haploid hybrids. / Thesis (PhD)--University of Pretoria, 2008. / Genetics / unrestricted

The NDSU EarlyGEM or the Early Germplasm Enhancement of Maize (Zea maize L.) is a long term incorporation program designed to increase the genetic diversity of short season hybrids. Starting in 1999, exotic GEM breeding crosses derived from temperate accessions: BR52051, CH05015; tropical accessions: SCR01, CUBA17, FS8B; and tropical hybrid DKB844 along with late checks: B73, Mo17, and Iowa Stiff Stalk Synthetic (BSSS), were adapted to short-seasons and incorporated via a modified backcross (BC) procedure. This study was designed to assess the genetic diversity in exotic derived BC1:S1 lines and their competitive potential as sources of new and unique hybrids. Useful genetic diversity was evaluated with testers belonging to opposite heterotic groups, LH176 representing a non stiff stalk and TR3026 x TR2040 a stiff stalk testers and were tested in five North Dakota environments over two years (2009 and 2010). All the traits showed highly significant (P<0.01) differences across genotypes except root and stalk lodging. Among 236 experimental testcrosses, 64 were statistically not different (LSD, 0.05) to industry hybrids for grain yield. BC derived lines from BR52051, CHO5015, DKB844 showed diverse alleles for low grain moisture (below 87 relative maturity days) at harvest and high grain yield. SCR01, BR52051, CHO5015 and CUBA117 derived lines produced hybrids with high grain oil (4. 9% vs. 4.1%) and grain protein (10.4% vs. 9.1%) contents compared to top checks. The results showed that the exotic incorporations are the sources of unique new alleles for early maturing maize not present in existing US germplasms (e.g. B73, Mo17, and BSSS). Even though each exotic cross was unique to integrate diverse alleles, utilizing multiple unique exotic crosses for incorporation showed large variation for specific traits. Phenotypic correlations of traits showed grain moisture played the most important role for short season hybrid development. Exotic incorporation through NDSU EarlyGEM has shown a new way of breeding early maturing maize keeping the breeding program open and genetic diversity high.

Fine-leaved Festuca valesiaca possesses abiotic stress tolerances. However, their agronomic performances in the western United States and its genetic relationship to species of the Festuca ovina complex have not been investigated. Also, natural hybridization due to open pollination presents difficulties in distinguishing them for closely related taxa using morphological analysis. Given the species’ agronomic potentials, a project was designed to identify Festuca valesiaca accessions possessing high biomass production and seed yield for possible low-maintenance applications and to examine their relatedness to taxa of the Festuca ovina complex by multi-locus AFLP genotyping and chloroplast DNA sequence analysis using primer combinations designed from three intergenic spacers. Plant vigor, height and width, total biomass, and seed weight and seed number of Festuca valesiaca accessions were evaluated from 2009 to 2011 at Blue Creek, Utah in a random complete block design with six replications. The Festuca valesiaca accessions examined produced abundance of small seeds. Seed production was significantly (P = 0.001) correlated (r2 = 0.84) with the total biomass, plant height, and plant vigor rating. The Festuca valesiaca accessions examined possessed lower height than the control ‘Cascade’ but higher biomass, spring green-up, and seed production. Given their morphological attributes, Festuca valesiaca accessions PI 659923, W6 30575, and W6 30588 should be considered for low-maintenance applications and use in plant improvement. The AFLP-based neighbor-joining analysis indicated that Festuca valesiaca is a closely related subcluster of Festuca ovina and should be considered as one species. Festuca trachyphylla is a subcluster under Festuca ovina and Festuca valesiaca. Festuca idahoensis has a close relationship with Festuca roemeri but not with Festuca ovina. Low admixture was detected between the Festuca rubra and Festuca trachyphylla accessions examined, while a comparative high admixture was detected among the commercial cultivars examined. Chloroplast sequences data reconfirmed that the Festuca ovina complex genetically differed from Festuca rubra and the other reference taxa examined. Festuca valesiaca and Festuca ovina possessed the same maternal lineage based on chloroplast DNA sequence analysis. One Festuca valesiaca accession, W6 30537, was genetically similar to the Festuca rubra examined and should be putatively reclassified as Festuca rubra pending further taxonomic analysis.

No description available.

Gray leaf spot (GLS) of corn (Zea mays L.), caused by the fungus Cercospora zeaemaydis (CZM) (Tehon and Daniels) has increased in incidence and severity with increasing use of no-tillage and continuous corn practices. This disease can be yield limiting. Corn hybrids were evaluated under natural disease pressure for three years (1989, 90, and 91) at two locations (Montgomery and Wythe Co., VA). Yield losses ranged from 2127.4 kg/ha (Wythe Co., 1991) to 4242.2 kg/ha (Wythe Co., 1990). It was estimated that 77% of the variability in yield was due to GLS. Fungicides were evaluated for the control of GLS over three years on a susceptible hybrid, Pioneer Brand 3320. All fungicides, with the exception of mancozeb, provided significant control over nontreated check in all years. Benomyl, propiconazole and terbutrazole were the most effective fungicides. As much as 93% of the variablilty in yield was attributed to blighting. Reduction in blighting also increased the kernel weight. The toxin, cercosporin, produced by CZM was evaluated for its ability to elicit differential responses in corn germplasm by three methods, ie., vein inoculation, root, and shoot uptake. No consistant differential reponses were found with vein inoculation, but 31-day old plants were significantly more sensitive to the toxin than 21-day old plants, as measured by lesion width. Root and shoot uptake of the toxin by inbred germplasm produced lesions that resembled those produced by CZM in the field. Microscopic, yellow fluorescing crystals were found associated with necrotic tissue from toxin-treated inbreds. Significantly more injury occurred to toxin-treated inbreds exposed to light than to darkness. By chromatographic analysis, 407.1-1076.7 ng of toxin/g of tissue was recovered from leaf lesion extracts of plants exposed to light. Five inbreds (B73, H99, Va59, NC250a, and NC264) showed consistent and differential responses to the toxin. H99 and NC250a showed differential responses to the same concentration of toxin, thus suggesting that some germplasm are more sensitive to the toxin than others. Tests using the toxin as a means to identify resistant germplasm did not provide reliable predictions of germplasm response to CZM in the field. / Master of Science

No description available.

MSCAGR ( Plant Production) / Department of Plant Production / See the attached abstract below

M.Sc. / Climate change, loss of habitat and over-exploitation of natural resources as well as the introduction of invasive alien species through human activities are resulting in an ever increasing risk of extinction of many plant and animal species. There are two major approaches to conserving threatened and endangered species. Firstly the large scale preservation of natural habitat and ecological processes, thereby protecting the species inhabiting the habitat. The second approach involves the ex-situ breeding of rare and endangered species. It is estimated that in the next 200 years approximately 800 mammalian species will require the assistance of breeding programs to ensure long term genetic viability. Biological Resource Banks (BRB) can potentially contribute to this challenge by providing a source of genes that can be used to counter the effects of external selection pressures, genetic drift and inbreeding depression in small or fragmented populations. These banks commonly contain biological materials such as cryopreserved sperm, embryos and cell cultures mainly as genetic and research resources. . Biological resource banks can potentially use these cryopreserved gametes together with assisted reproductive technologies (ART), such as artificial insemination (AI), in vitro fertilisation (IVF), embryo transfer (ET), intracytoplasmic sperm injection (ICSI) and nuclear transfer (NT) to maintain genetic heterogeneity in ex-situ and wild populations. Ascertaining the appropriate protocols for developing the ARTs necessary for non-domestic species is one of the major challenges faced by reproductive physiologists. Typically, there is very little available information about the processing of semen, the effects of diluents, concentration and type of cryoprotectants and freeze-thaw methods for sperm samples of non-domestic species. Procedures proven to be highly effective in humans and laboratory or domestic species, are frequently adopted and modified for use in related wildlife species. It is thus necessary to gain knowledge of the reproductive physiology of wildlife species in order to define effective protocols for the cryopreservation of biomaterials which assists in the conservation of South Africa‘s diverse wildlife species. Sperm quality assessment is a useful tool for assessing the reproductive health of free-ranging populations as well as for selecting individuals for future assisted reproduction programs.

Indigenous communities have developed a wealth of knowledge, which plays a crucial role in providing leads for the use of genetic resources and bioprospecting. However, such knowledge is under increasing threat due to the misappropriation of the biological resources and associated traditional knowledge of indigenous communities, through both bioprospecting, as well as the inappropriate exercise of intellectual property rights. The internationally agreed Convention on Biological Diversity (CBD) attempts to provide a bulwark against biopiracy and although it assists indigenous communities to regain some control, the CBD has proven inadequate in the protection of the traditional knowledge of indigenous communities. The subsequent Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilization to the Convention on Biological Diversity (Nagoya Protocol) attempts to address some of these limitations but unfortunately has its own shortcomings, as it was largely concluded on the basis of a compromise between developed and developing countries. This dissertation will undertake a critical analysis of the provisions of the CBD and Nagoya Protocol, with a view to establishing the level of protection these instruments afford indigenous communities. It will be shown that notwithstanding the drawbacks of both the CBD and Nagoya Protocol, they nevertheless represent major achievements in the journey to protect the genetic resources and associated traditional knowledge of indigenous communities. It is in this context that this dissertation will analyse South Africa’s Access and Benefit Sharing (ABS) regime in relation to the protection it affords indigenous communities and in the light of the implementation challenges that such legislation presents. A particular focus will be on whether South Africa’s ABS legislation complies with the country’s international obligations relating to the protection of indigenous communities and whether South Africa’s approach to the protection of the genetic resources and associated traditional knowledge of indigenous communities, in the context of bioprospecting, is adequate or whether there exists potential for its enhancement. / Thesis (LL.M.)-University of KwaZulu-Natal, Durban, 2013.

MSCAGR (Plant Production) / Department of Plant Production / Tepary bean (Phaseolus acutifolius) is an important food legume originating from South America and the South-western parts of the United States. The crop is produced in many countries worldwide including South Africa. It is highly tolerant to drought and the seed contains a wide range of vitamins, minerals and protein of high nutritional quality. The genetic base of tepary bean is narrow but can be widened by chemical mutagenesis. However, there are no reports on the impact of chemical mutagenesis on the root nodulation and seed storage proteins in tepary bean. Therefore, this study was designed to examine root nodulation attributes and seed storage proteins of three tepary bean genotypes in the early mutagenic generations (M2 to M4) derived through treatment with varying doses (0.0, 0.5, 1.0, 1.5 and 2.0 v/v) of ethyl methanesulfonate (EMS). The experiment on root nodulation attributes was laid out as a 3 x 5 x 3 (genotypes x EMS doses x mutant generations) factorial design replicated three times. At harvest, shoot height (SHT), primary root length (PRL), dry weights (shoot, root and nodule), number of nodules per plant (NNP) and grain yield components such as the number of pods per plant (NPP) and number of seeds per pod (NSP) were measured. Highly significant (P≤0.01) dose effects were observed for SHT, PRL, shoot dry weight (SDW) and root dry weight (RDW). Highly significant (P≤0.01) interaction effects of mutant generation x genotype x dose were observed for NSP. A highly significant (P≤0.01) positive linear relationship was observed between the NNP and nodule dry weight (NDW). Increase in the PRL suggested that tepary bean mutants could be important in drought tolerance. EMS treatment led to an enhanced partitioning of dry matter (assimilates) to the shoots and roots. There was a three fold increase in most of the root nodulation traits at the 0.5% EMS dose.The Kjeldahl method was used for crude protein determination whereas the sodium dodecyl sulphate – polyacrylamide gel electrophoresis (SDS PAGE) was utilized in determining the protein banding patterns of the bean. There were highly significant (P≤0.01) differences among the genotypes in crude protein accumulation. Highly significant (P≤0.01) mutant generation x genotype x dose were observed for seed protein accumulation. ‘Genotype 3’ attained the highest protein content (24.23%) at 1.5% EMS dose in the M4 generation. EMS doses ≥0.5% positively stimulated protein accumulation in all genotypes but high EMS doses (2.0%) depressed protein content. There were significant variations in seed storage protein profiles among the genotypes and mutant generations. ‘Genotype 6’ showed a distinct 15.0kDa protein fragment which was absent in the majority of the remaining genotypes. The presence of distinct protein subunits in the three genotypes could be used in varietal / NRF