Host defense peptides (HDPs) provide innate immune defense against invasive S. aureus infection. Recent studies suggest potential cross-resistance between HDPs and the lipopeptide antibiotic, daptomycin (DAP). Isolates that exhibit DAP non-susceptible phenotypes may have virulence advantages and pose challenges to effective treatment. The current studies were performed to compare the efficacies and mechanisms of action of native and engineered HDPs vs. clinical S. aureus strain pairs which differed in susceptibility to daptomycin in vitro. Ultrasensitive radial diffusion and multi-colored flow cytometry were employed to analyze distinctive susceptibilities and mechanisms of resistance, respectively. Overall efficacies were greater vs. DAP-susceptible (DSSA) vs. DAP non-susceptible (DNSA) S. aureus isolates for some but not all HDPs. Efficacy profiles of certain HDPs were influenced by pH, regardless of whether the particular isolate was DSSA or DNSA phenotype. Mechanistically, DSSA and DNSA isolates differed in responses to specific HDPs regarding cell energetics, membrane permeability, cytoplasm membrane turnover, and cell death protease induction. DSSA and DNSA strain pairs exhibited non-identical mechanisms of resistance to HDPs. At pH 7.5, as expected, HDPs hNP-1 and RP-1 exerted significantly greater efficacy on susceptible control strain ISP479C vs. its resistant counterpart ISP479R. These data suggest different mechanisms of HDP resistance are active in differing DNSA strains. These preliminary results are under further investigation, as are the genetic determinant(s) that may emerge during infection. If substantiated, these findings would imply multiple modes of survival of S. aureus in the face of DAP or HDPs.

There has been increasing concern regarding the emergence of multi-drug resistant pathogens. The resistance develops when pathogens, especially bacteria, are frequently exposed to conventional antibiotics, as they are heavily used in both human and livestock. This is due to the high target specificity of conventional antibiotics, which places pathogens in high selective pressures and eventually results in drug resistant by mutations. To address this issue, global actions and cooperation are needed. At the same time, new technologies and strategies need to be developed. Host defense peptides (HDPs) are widely found in the innate immune system. They show both direct antimicrobial properties and immunomodulatory activities. The multifaceted functions of HPDs make them less likely to promote antimicrobial resistance. Thus, they are promising as new therapeutics to treat multi-drug resistant infections. In fact, several drug candidates derived from HDPs have entered the clinical trial, but none of them got into the clinic. This is due to several challenges associated with HDPs, such as low in vivo stability, high cost of manufacturing, and toxicity to mammalian cells. In this dissertation, we explored the ability of a new type of unnatural scaffolds (γ-AApeptides) to mimic the functions of HDPs, including both broad spectrum antimicrobial properties and immunomodulatory activities. Furthermore, the efforts to identify simpler and more drug like γ-AApeptide based antimicrobial agents were also discussed. The findings in this dissertation may lead to the development of potential drug candidates to treat multi-drug resistant infections.

No description available.

Melampsora larici-Populina est un champignon biotrophe qui infecte le peuplier et cause la maladie de la rouille foliaire, entraînant d'importants dégâts dans les peupleraies. Un des objectifs de l'UMR Interactions Arbres/Microorganismes est de caractériser les déterminants moléculaires de ce pathosystème. Au cours de cette thèse, des approches post-Génomiques ont permis de mener à bien quatre projets de recherche. Premièrement, l'analyse du transcriptome des temps précoces de l'interaction peuplier/M. larici-Populina a révélé un transporteur de sulfate de peuplier fortement induit par l'infection (chapitre II). Deuxièmement, l'analyse phylogénomique de la famille des thaumatin-Like proteins (TLP) a entre autres mis en évidence certains clades spécifiquement associés aux réponses aux stress chez le peuplier (chapitre III). Troisièmement, le gène codant la petite protéine sécrétée Risp de fonction inconnue est fortement induit lors des réponses de défense du peuplier et n'a pas d'homologue chez les autres plantes. La protéine recombinante est intrinsèquement désordonnée et présente une double activité de protéine antifongique envers M. larici-Populina et d'éliciteur endogène des réponses de défense chez le peuplier (chapitre IV et V). La combinaison de ces deux propriétés n'a jamais été rapportée chez une protéine de plante. Enfin, les gènes MlpP4.1 et MlpH1.1 de M. larici-Populina codent des petites protéines sécrétées riches en cystéines et de fonction inconnue, considérées comme des effecteurs candidats (chapitre VI). L'expression de MlpP4.1 et MlpH1.1 est très fortement induite lors de l'infection des feuilles de peupliers et des activités de virulence ont été observées chez Arabidopsis thaliana. Les analyses biochimique et structurale des protéines recombinantes sont en cours et ont déjà permis de démontrer la forte stabilité de MlpP4.1, probablement liée à la présence de plusieurs ponts disulfures. A l'aide des protéines recombinantes, plusieurs partenaires protéiques ont été identifiés chez les plantes permettant d'établir des hypothèses quant à leur rôle / Melampsora larici-Populina is a biotrophic fungus that infects poplar and causes the foliar rust disease, leading to severe damages in plantations. A major aim of the Tree- Microbe Interactions department is to characterize molecular determinants of the pathosystem. During this thesis, four research projects were achieved through post-Genomic approaches. First, transcriptome analysis of the early interaction between poplar and M. larici-Populina revealed a fungal-Induced host sulfate transporter (chapter II). Secondly, the phylogenomic analysis of the thaumatin-Like protein (TLP) family uncovered some clades specifically associated with stress responses in poplar (chapterIII). Thirdly, the gene encoding the small secreted protein of unknown function Risp is strongly induced during poplar defense reponses and has no homolog in other plants. The recombinant protein is intrinsically disordered and presents a dual activity as an antifungal protein against M. larici-Populina and as an endogenous elicitor of defense responses in poplar (chapter IV and V). The combination of both properties in a single protein has never been reported in plants. Finally, M. larici-Populina MlpP4.1 and MlpH1.1 genes encode cysteine-Rich small-Secreted proteins of unknown fonction, considered as candidate effectors (chapter VI). MlpP4.1 and MlpH1.1 expression is strongly induced during poplar leaf colonization, and virulence activities were observed in Arabidopsis thaliana. Biochemical and structural analyses of recombinant proteins are ongoing and already revealed the strong stability of MlpP4.1, likely due to the presence of several disulfide bridges. Several plant partners of the recombinant proteins were identified and have allowed for setting hypotheses about their role

Submitted by Sara Ribeiro (sara.ribeiro@ucb.br) on 2018-11-07T17:53:28Z No. of bitstreams: 1 StellaMarisdeFreitasLimaTese2018.pdf: 12066835 bytes, checksum: 9ad384b4f040333154c3598b59852583 (MD5) / Approved for entry into archive by Sara Ribeiro (sara.ribeiro@ucb.br) on 2018-11-07T17:53:52Z (GMT) No. of bitstreams: 1 StellaMarisdeFreitasLimaTese2018.pdf: 12066835 bytes, checksum: 9ad384b4f040333154c3598b59852583 (MD5) / Made available in DSpace on 2018-11-07T17:53:52Z (GMT). No. of bitstreams: 1 StellaMarisdeFreitasLimaTese2018.pdf: 12066835 bytes, checksum: 9ad384b4f040333154c3598b59852583 (MD5) Previous issue date: 2018-08-21 / Failure of endodontic therapy is mainly based on the persistence of the microorganism inside the root canal system, perpetuating periradicular pathologies. The need for endodontic reintervention reduces the success rate and turns the development of new therapies into a necessity. Host defense peptides (HDPs) have a therapeutic potential because of its characteristics as broad spectrum antimicrobial activity, immunomodulatory capacity and repair induction. The present study aimed to demonstrate HDPs HHC-10, LL-37 and synoeca-MP activities compared to the commonly used chemical agents Ca(OH)2, NaOCl and chlorhexidine (CHX) in in vitro and in vivo environments. In vitro analysis involved (1) antimicrobial assays for MIC/MBC/MFC determination, antibiofilm and synergistic activities (against Candida albicans, Enterococcus faecalis and Staphylococcus aureus), (2) hemolytic assay and determination of therapeutic index, (3) immunomodulation assays (from RAW 264.7 monocytes) and (4) osteoclastogenesis assays (from mouse bone marrow cells). In vivo assays were based on periradicular lesions induced and treated in rats with subsequent analysis by radiographic, tomographic and histological examinations. Results demonstrated effective antimicrobial activity of HHC-10 (except antibiofilm activity) and synoeca-MP besides NaOCl and CHX. Higher therapeutic index was observed for peptides (HHC-10 and synoeca-MP) with low or no hemolytic activity. Synergism analysis demonstrated better interaction between synoeca-MP and CHX. Immune assays from monocyte cultures demonstrated a pro-inflammatory activity of LL-37 and synoeca-MP and a pro- and anti-inflammatory effect of HHC-10 and Ca(OH)2. However, none of the agents tested reduced osteoclastogenesis in vitro. In in vivo endodontic treatment conditions, HHC-10, synoeca-MP and Ca(OH)2 significantly reduced periapical lesions, although only peptides were able to reduce inflammation in histological analysis. Therefore, HHC-10 and synoeca-MP demonstrated in vitro and in vivo potential for application in endodontic therapy. However, further researches are needed regarding the mechanism of action of HDPs and the possible therapeutic formulations for future analysis in animal models. / O insucesso da terapia endodôntica está baseado na persistência de microrganismos principalmente no interior do sistema de canais radiculares, perpetuando as patologias perirradiculares associadas à tal infecção. A necessidade de reintervenção endodôntica reduz o percentual de sucesso e, portanto, o surgimento de novas terapias é necessário. Dessa forma, peptídeos de defesa do hospedeiro (PDHs) possuem potencial terapêutico associado às suas características de atividade antimicrobiana de amplo espectro, capacidade imunomodulatória e indução de reparo. O presente estudo objetivou demonstrar a atividade dos PDHs HHC-10, LL-37 e synoeca-MP comparado aos agentes químicos comumente utilizados Ca(OH)2, NaOCl e clorexidina (CHX) em ambientes in vitro e in vivo. Para tanto, foram realizadas análises in vitro envolvendo: (1) ensaios antimicrobianos com determinação de MIC/MBC/MFC, atividade antibiofilme e atividade sinérgica (contra Candida albicans, Enterococcus faecalis e Staphylococcus aureus), (2) ensaio hemolítico e determinação do índice terapêutico, (3) ensaios de imunomodulação (a partir de monócitos RAW 264.7) e (4) ensaios osteoclastogênese (a partir de células da medula óssea de camundongos). Os ensaios in vivo foram conduzidos a partir das lesões perirradiculares induzidas e tratadas em ratos com subsequente análise por exames radiográficos, tomográficos e histológicos. Assim, os resultados demonstraram efetiva atividade antimicrobiana dos peptídeos HHC-10 (exceto atividade antibiofilme) e synoeca-MP além do NaOCl e CHX. Observou-se maiores índices terapêuticos para os peptídeos (HHC-10 e synoeca-MP) com baixa ou nenhuma atividade hemolítica. As análises de interação demonstraram combinação sinérgica necessitando de menor concentração a partir da interação entre synoeca-MP e CHX. A partir da cultura de monócitos, observou-se uma atividade pró-inflamatória a partir dos peptídeos LL-37 e synoeca-MP e um efeito pró- e anti-inflamatório do peptídeo HHC-10 e do Ca(OH)2. No entanto, nenhum dos agentes testados reduziram a osteoclastogênese in vitro. Já em condições de tratamento endodôntico in vivo, os PDHs HHC-10, synoeca-MP e o Ca(OH)2 reduziram significativamente lesões periapicais, apesar de somente os peptídeos serem capazes de reduzir inflamação em análises histológicas. Portanto, os peptídeos HHC-10 e synoeca-MP demonstraram potencial in vitro e in vivo para aplicação na terapia endodôntica. No entanto, faz-se necessário maiores investigações sobre o mecanismo de ação dos mesmos e possíveis formulações terapêuticas para futuros testes em modelos animais.

Doctor of Philosophy / Department of Anatomy and Physiology / Chris R. Ross / The immediate antiviral defense residing in the innate immune system of multicellular organisms critically determines the outcome of viral infection. This dissertation presents a study of the "effectors" and "receptors" of porcine innate immunity in infection caused by porcine reproductive and respiratory syndrome virus (PRRSV), which is the most devastating pathogen impacting the swine industry. In the first investigation, eleven novel porcine host defense peptides (HDPs), [Beta]-defensins (pBDs), were identified and characterized. All of these peptides have a consensus [Beta]-defensin motif and phylogenetically are similar to orthologs from other species. A differential expression pattern for these 11 newly identified genes was found. For example, pBD-2 and pBD-3 were expressed in bone marrow, lung, skin and other lymphoid tissues. pBD-2 and pBD-3 were further characterized for their gene structure, and antimicrobial activity of synthetic peptides. The second study was conducted to evaluate PRRSV-induced differential expression of porcine HDPs and direct antiviral activity of selected HDPs against PRRSV. In vitro incubation of PRRSV with synthetic pBD-3 or protegrin-4 (PG-4) significantly inhibited viral infectivity. Using nine protegrin-derived peptides, it was determined that cyclization of PG-4 increased anti-PRRSV activity and mutation of some residues in PG-4 diminished some of the activity. These findings suggest the potential role of porcine HDPs as a group of innate antiviral effectors. In the third and fourth investigations, porcine Toll-like receptor (TLR) 3 and TLR7 were identified and functionally expressed. Increased expression of TLR3 was observed in PRRSV-infected porcine lungs. Stimulation of porcine alovelar macrophages with poly (I:C), a synthetic TLR3 ligand, increased expression of interferon-[Beta] and suppressed PRRSV infectivity. Activation of porcine TLR3 overexpressed in a PRRSV-sensitive cell line, elicited antiviral responses to PRRSV infection. Partial silencing of TLR3 in PAMs resulted in increased PRRSV infection. In summary, these data provide molecular information on porcine TLR3 and TLR7, and their involvement in PRRSV pathogenesis, which may elicit new strategies to prevent this costly swine disease.

Doctor of Philosophy / Department of Human Nutrition / Tonatiuh Melgarejo / Background and Objective: Crohn’s disease (CD) patients express low levels of host defense peptides (HDPs) especially β-defensins, which may compromise intestinal barrier function. Antibiotic treatment for bacterial infections in CD is limited and rarely curative, making it necessary to find alternative therapeutic approaches. We therefore investigated to what extent an essential amino acid; L-isoleucine (L-ILE) might induce the expression of human β-defensins (HBDs) in colonic epithelial cells as an alternative approach to help patients with CD. Antimicrobial activity of HBD2 was also assessed against four bacterial isolates which can cause secondary infections in CD. Methods: HTB-37 Caco-2 cells were stimulated with L-ILE at a concentration of 0 - 500µg/ml for 6 hours. Total RNA was extracted using RNeasy Micro Kit (QIAGEN). Reverse transcription was carried out with Superscript ®III First-Strand Synthesis System. The cDNA was amplified using specific primers for HBD1-3. Antimicrobial activity of HBD2 was determined using the broth dilution assay. Results: HBD1 was constitutively expressed under all conditions. HBD2 was expressed in HTB-37 cells after stimulation with L-ILE. Below 25µg/ml L- ILE stimulation, no expression of HBD2 was observed. HBD2 exhibited antimicrobial activity against bacterial isolates tested, with a MIC of 32, 64 and 128 µg/ml for both strains of E. coli, S. aureus and P. aeruginosa respectively. Conclusions: Our results indicate that L-ILE stimulation of HTB-37 Caco-2 cells can induce HBD2 expression. Data collected from our in vitro studies might have major implications for modifying the intestinal microbiota towards a healthier state in CD patients. Promoting the expression of HBD2 by colonic cells may lead to a lower rate of infection in these patients. Future in vivo studies are warranted to determine the potential clinical use of intra colonic administration of L-ILE in CD patients. The observed antimicrobial activity of HBD2 against bacterial isolates provides evidence that it is a crucial component of mucosal epithelial defense against infections which can complicate disease symptoms in CD.

<p>Parasite infections around the world are a huge economic burden and decrease the quality of life for many people. Probiotic bacteria are being investigated as a possible treatment for many enteric issues due to their beneficial effects by altering the immune system. Goblet cells are the main source of mucins in the gut, and play an important role in host defense. Alterations in goblet cells and mucin have been implicated in a number of gastrointestinal (GI) diseases and infections. The aim of this study is to develop a probiotic based strategy to modulate goblet cell function in relation to host defense in enteric infection. Utilizing a murine model of parasite infection, <em>Trichuris muris</em>,<em> </em>we examined the effect of daily administration with probiotic <em>Lactobacillus reuteri</em> in different strains of mice and investigation of goblet cell alterations, immune and inflammatory responses in gut, and host defense mechanisms.</p> <p>Treatment with<strong> </strong>live <em>L. reuteri</em> significantly enhanced worm expulsion in resistant C57BL/6 mice and this was associated with significant increase in goblet cells numbers and an increase in IL-10. This lead to investigation of the probiotic effects in IL-10 knock out (KO) and Muc2 KO mice during the infection. There was no difference of worm burden or goblet cell amounts in infected IL-10 KO mice infected treated with probiotic or medium. In infected Muc2 KO mice treated with <em>L. reuteri</em>, there was an earlier increase of goblet cells, and a corresponding decrease in worm numbers. Finally, assessment of this probiotic in susceptible ARK mice revealed no alterations in worm burden, but the treatment prevented the increase in IFN-γ and IL-1β and significantly increased goblet cell numbers.</p> <p>These data demonstrate that altering the flora with probiotic <em>L. reuteri</em> treatment can modulate intestinal goblet cell biology and immune responses in gut, and promote worm expulsion, possibly through an IL-10 mediated mechanism. The increases in goblet cell numbers may also play a role in the early expulsion of the parasite. In addition to enhancing our understanding on the beneficial effect of probiotics in host defense in enteric infection, this research provides new information on gut function in the context of goblet cells and mucins.</p> / Master of Science (MSc)