Köln, Universiẗat, Diss., 2000.

Cumene hydroperoxide (CHP), a type of organic peroxide, is widely used in the chemical industry for diverse applications. However, it decomposes and undergoes highly exothermic runaway reactions under high temperature because of its unstable peroxide functional group. The risk of runaway reaction is intensified by the fact that operation temperature of CHP is close to its onset temperature in many cases. To ensure safe handling of CHP in the chemical industry, a lot of research has been done on it including theoretical research at the microscopic level and experimental research at the macroscopic level. However, the unstable radicals in the CHP decomposition reactions make it difficult to study its reaction pathway, and therefore lead to incomplete understanding of the reaction mechanism. The slow progress in theoretical research hinders the application of the theoretical prediction in experimental research. For experimental research, the lack of integration of operational parameters into the reactivity evaluation limits its application in industrial process. In this thesis, a systematic methodology is proposed to evaluate the reactivity hazards of CHP. This methodology is a combination of theoretical research using computational quantum chemistry method and experimental research using RSSTTM. The theoretical research determined the dominant reaction pathway of CHP decomposition reaction through the study of thermodynamic and kinetic stability, which was applied to the analysis of experimental results. The experimental research investigated the effect of CHP concentration on runaway reactions by analyzing the important parameters including temperature, pressure, self-heat rate and pressure rate. This methodology could also be applied to other organic peroxides or other reactive chemicals. The results of theoretical research on reaction mechanism show that there is a dominant reaction pathway, which consumes most of the CHP in decomposition reaction. This conclusion agrees with the experimental results that 40 wt% is a critical point for almost all important parameters of runaway reactions. In the high concentration range above 40 wt%, some unknown reaction pathways are involved in decomposition of CHP because of lack of cumene. The shift of reaction mechanism causes the change of the effect of concentration on runaway reactions.

Organic hydroperoxide resistance (Ohr) proteins are highly efficient thiol-based peroxidases that play central roles in bacterial response towards organic hydroperoxides. In Fungi, Ohr frequently presents a N-terminal extension, which is predicted to target them to mitochondria. The catalytic triad of Ohr comprises the peroxidatic Cys (Cp), the catalytic Arg (Rc) and a Glu (Ec) are fully conserved and interact among themselves by a salt bridge network in a reduced form of the enzyme (the so-called closed state). After getting oxidized to sulfenic acid (Cys-SOH), Cp condenses with the sulfhydryl group of resolution Cys (Cr) in a disulfide bond. The absence of negativity of the thiolate (RS-) in Cp facilitates the opening of the Arg-loop (containing the Rc) away from the active site, generating the so-called open state. However, the molecular events associated with the high reactivity of Ohr enzymes towards hydroperoxides and its specific reducibility by the dihydrolipoamide (DHL) or by lipoylated proteins were still elusive before this work. Additionally, several factors support the idea of Ohr as a target for drug development: (i) Ohr displays unique physicochemical properties; (ii) bacteria mutant for Ohr (Δ ohr) are highly sensitive to oxidative stress; (iii) the indications that Ohr might be involved in bacterial virulence; and (iv) its absence in mammals and vascularized plants. In this thesis, several aspects of Ohr enzymes were evaluated. In chapter 2, we biochemically characterized the Ohr homologs from the ascomycete fungus Mycosphaerella fijiensis Mf_1 (MfOhr), the causative agent of Black Sigatoka disease in banana plants, which presented extraordinary reactivity towards linoleic acid hydroperoxides (kobs = 3.18 (± 2.13) ×108 M-1.s-1). Furthermore, through subcellular fractionation of M fijiensis protoplast cells followed by western blot analysis, we confirmed the in silico prediction that MfOhr is a mitochondrial protein. In chapter 3 and 4, we described seven new crystallographic structures from two opportunistic pathogen, one from Xylella fastidiosa and six from Chromobacterium violaceum (including the first representative of the complex between Ohr and its biological reductant, DHL). Taken together these structures might represent new snapshots along the catalysis. Furthermore, several molecular modelling approaches, such as classical mechanics (MM), steered molecular dynamics (SMD), hybrid quantum mechanics (QM-MM) and together with enzymatic assays of point mutations, indicated that Ohr underwent unique structural switches to allow an intermittent opening (oxidized state) and returning to a more stable closed form (reduced state) of an Arg-loop along catalysis. Remarkably, dihydrolipoamide directly assisted the closing the Arg-loop and thereby the turnover of the enzyme. In chapter 5, we describe the identification of two compounds (C-31 & C-42) that could represent a framework for further studies attempting to find specific Ohr inhibitors, either through ab initio design of chemical compounds and virtual screening using pharmacophoric models. The IC50 calculated for C-31 and C-42 were 124.4-248.5 µM and 243.3-321.7 µM, respectively. Finally, this thesis highlights several new aspects related to Ohr function: 1 - evidence that eukaryotic Ohr are preferentially located in mitochondria and share several biochemical properties with the prokaryotic ones; 2 - the network of polar interactions among residues of the catalytic triad (Cp, Rc and E) strongly contributed to stabilize Ohr in the closed state, in an optimum configuration for hydroperoxide reduction; 3 - evidence that disulfide bond formation and the product release (alcohol derived from hydroperoxide reduction) facilitate the opening of the Rc loop to an intermediate state (probably not to the excessively open state presented in crystallographic structures); 4 - mapping the interactions between the biological reductant (DHL) and the Ohr active site; 5 - strong indications that DHL is not able to fit and react with Ohr in the close conformation; 6 - the first trials for search of molecules to specifically target Ohr proteins, although further assays must be performed to verify the specificity of the selected compounds to target Ohr. Therefore, we describe relevant new information for an antioxidant protein that displays highly efficient catalysis, comparable to other very important hydroperoxide removing enzymes, such as GSH peroxidase and peroxiredoxin / As proteínas Ohr (Organic hydroperoxide resistance) são peroxidases dependente de tiól extremamente eficientes e têm um papel central na resposta das bactérias contra peróxidos orgânicos. Em fungos, as proteínas Ohr apresentam uma extensão N-terminal, cujo predições in silico apontam estar associada ao direcionamento da proteína para a mitocôndria. A tríade catalítica é composta pela cisteína peroxidatic (Cp), a arginina (Rc) e o glutamato (Ec) catalíticos que são totalmente conservados e interagem entre eles por uma rede de interações de ponte salina, na forma reduzida da proteína (conformação fechada). Após se tornarem oxidadas em ácido sulfênico (Cis-SOH), a Cp condensa com o grupo sulfidrila da cisteína de resolução (Cr) numa ligação disulfeto. A ausência da carga negativa do tiolato (RS-) da Cp facilita a abertura da alça que contem a Rc para longe do centro ativo, gerando a conformação aberta. No entanto, os eventos moleculares associados a alta reatividade das enzimas Ohr contra hidroperóxidos e a sua redução pela dihydrolipoamida (presente em proteínas lipoiladas), ainda está descrita de forma bem superficial. Adicionalmente, vários fatores suportam a ideia de que a Ohr seria um potencial alvo para o desenvolvimento de drogas: (i) a Ohr exibe propriedade físico-químicas únicas; (ii) as bactérias mutantes para Ohr (Δohr) são fortemente sensíveis ao stress oxidativo; (iii) indicações de que a Ohr poderá está envolvida na virulência de várias bactérias; e (iv) a ausência de Ohr em mamíferos e plantas vascularizadas. Nesta tese, vários aspetos relacionados com as enzimas Ohr foram avaliados. No Capitulo 2, foi caracterizada bioquimicamente a proteína Ohr homologa de fungo ascomiceto, Mycosphaerella fijiensis Mf_1 (MfOhr), o agente causador da doença de bananas, Sigatoka-negra. A enzima apresentou eficiente atividade contra peroxido de ácido linoleico (kobs = 3.18 (± 2.13) ×108 M-1.s-1). Além disso, através do fracionamento sub celular de protoblasto de M fijiensis seguido de western blot, foram confirmadas as predições in silico de que a MfOhr é uma proteína mitocondrial. No capítulo 3 e 4, foram descritas sete estruturas cristalográficas oriundas de dois patógenos oportunistas, uma de Xylella fastidiosa e seis de Chromobacterium violaceum (incluindo o primeiro representante do complexo entre a Ohr e o seu redutor biológico, DHL). Estas estruturas poderão representar diferentes conformações ao longo do ciclo catalítico. Adicionalmente, várias abordagens de modelagem molecular, tais como mecânica clássica (MM), mecânica molecular direcionada (SMM) e mecânica quântica híbrida (QM-MM), juntamente com ensaios experimentais com mutações pontuais, indicaram que a Ohr sofre várias mudanças conformacionais para permitir uma abertura intermitente (estado oxidado) e o retorno para uma conformação fechada mais estável (estado reduzido) da alça da arginina ao longo da catálise. Notavelmente, a dihydrolipoamide assistiu diretamente o fechamento da alça da arginina e por consequência o turnover da enzima. No capítulo 5, foi descrita a identificação de dois compostos (C-31 e C-42) que representam estudos iniciais com a finalidade de encontrar inibidores específicos para a enzima Ohr. Estes compostos foram encontrados por ab initio design e por varrimento virtual com o uso de modelos farmacofóricos. Os IC50 calculados para o C-31 e C-42 foram de 124.4-248.5 µM e 243.3-321.7 µM, respectivamente. Finalmente, esta tese descreve vários aspetos relacionados com a função da Ohr: 1 - evidências que as Ohr de eucariotos estão preferencialmente localizadas na mitocôndria e partilham várias propriedades bioquímicas com as Ohr de bactéria; 2 - a rede de interações polares entre os resíduos da tríade catalítica (Cp, Rc e Ec) contribuem fortemente para a estabilização do estado fechado, a configuração ótima para a redução de hydroperoxidos; 3 - evidências de que a formação da ligação disulfeto e a liberação do produto (álcool derivado da redução do hydroperoxido) facilitam a abertura da alça da arginina até um estado intermediários (provavelmente não o estado totalmente exposto apresentado nas estruturas cristalográficas) 4 - o mapeamento das interações entre o redutor biológico no centro ativo da Ohr; 5 - fortes indicações de que a DHL não é capaz de interagir e reagir com a Ohr na conformação fechada; 6 - os primeiros ensaios para a procura por moléculas que especificamente interajam com a Ohr, apesar de que futuros ensaios terão de ser executados para verificar a especificidade dos compostos selecionados. Assim, nós descrevemos nova informação relevante sobre uma proteína antioxidante que exibe uma alta eficiência catalítica, comparável com outras importantes enzimas removedores de hydroperoxidos, tais como glutationa peroxidases e peroxiredoxinas

Organic hydroperoxide resistance (Ohr) proteins are highly efficient thiol-based peroxidases that play central roles in bacterial response towards organic hydroperoxides. In Fungi, Ohr frequently presents a N-terminal extension, which is predicted to target them to mitochondria. The catalytic triad of Ohr comprises the peroxidatic Cys (Cp), the catalytic Arg (Rc) and a Glu (Ec) are fully conserved and interact among themselves by a salt bridge network in a reduced form of the enzyme (the so-called closed state). After getting oxidized to sulfenic acid (Cys-SOH), Cp condenses with the sulfhydryl group of resolution Cys (Cr) in a disulfide bond. The absence of negativity of the thiolate (RS-) in Cp facilitates the opening of the Arg-loop (containing the Rc) away from the active site, generating the so-called open state. However, the molecular events associated with the high reactivity of Ohr enzymes towards hydroperoxides and its specific reducibility by the dihydrolipoamide (DHL) or by lipoylated proteins were still elusive before this work. Additionally, several factors support the idea of Ohr as a target for drug development: (i) Ohr displays unique physicochemical properties; (ii) bacteria mutant for Ohr (Δ ohr) are highly sensitive to oxidative stress; (iii) the indications that Ohr might be involved in bacterial virulence; and (iv) its absence in mammals and vascularized plants. In this thesis, several aspects of Ohr enzymes were evaluated. In chapter 2, we biochemically characterized the Ohr homologs from the ascomycete fungus Mycosphaerella fijiensis Mf_1 (MfOhr), the causative agent of Black Sigatoka disease in banana plants, which presented extraordinary reactivity towards linoleic acid hydroperoxides (kobs = 3.18 (± 2.13) ×108 M-1.s-1). Furthermore, through subcellular fractionation of M fijiensis protoplast cells followed by western blot analysis, we confirmed the in silico prediction that MfOhr is a mitochondrial protein. In chapter 3 and 4, we described seven new crystallographic structures from two opportunistic pathogen, one from Xylella fastidiosa and six from Chromobacterium violaceum (including the first representative of the complex between Ohr and its biological reductant, DHL). Taken together these structures might represent new snapshots along the catalysis. Furthermore, several molecular modelling approaches, such as classical mechanics (MM), steered molecular dynamics (SMD), hybrid quantum mechanics (QM-MM) and together with enzymatic assays of point mutations, indicated that Ohr underwent unique structural switches to allow an intermittent opening (oxidized state) and returning to a more stable closed form (reduced state) of an Arg-loop along catalysis. Remarkably, dihydrolipoamide directly assisted the closing the Arg-loop and thereby the turnover of the enzyme. In chapter 5, we describe the identification of two compounds (C-31 & C-42) that could represent a framework for further studies attempting to find specific Ohr inhibitors, either through ab initio design of chemical compounds and virtual screening using pharmacophoric models. The IC50 calculated for C-31 and C-42 were 124.4-248.5 µM and 243.3-321.7 µM, respectively. Finally, this thesis highlights several new aspects related to Ohr function: 1 - evidence that eukaryotic Ohr are preferentially located in mitochondria and share several biochemical properties with the prokaryotic ones; 2 - the network of polar interactions among residues of the catalytic triad (Cp, Rc and E) strongly contributed to stabilize Ohr in the closed state, in an optimum configuration for hydroperoxide reduction; 3 - evidence that disulfide bond formation and the product release (alcohol derived from hydroperoxide reduction) facilitate the opening of the Rc loop to an intermediate state (probably not to the excessively open state presented in crystallographic structures); 4 - mapping the interactions between the biological reductant (DHL) and the Ohr active site; 5 - strong indications that DHL is not able to fit and react with Ohr in the close conformation; 6 - the first trials for search of molecules to specifically target Ohr proteins, although further assays must be performed to verify the specificity of the selected compounds to target Ohr. Therefore, we describe relevant new information for an antioxidant protein that displays highly efficient catalysis, comparable to other very important hydroperoxide removing enzymes, such as GSH peroxidase and peroxiredoxin / As proteínas Ohr (Organic hydroperoxide resistance) são peroxidases dependente de tiól extremamente eficientes e têm um papel central na resposta das bactérias contra peróxidos orgânicos. Em fungos, as proteínas Ohr apresentam uma extensão N-terminal, cujo predições in silico apontam estar associada ao direcionamento da proteína para a mitocôndria. A tríade catalítica é composta pela cisteína peroxidatic (Cp), a arginina (Rc) e o glutamato (Ec) catalíticos que são totalmente conservados e interagem entre eles por uma rede de interações de ponte salina, na forma reduzida da proteína (conformação fechada). Após se tornarem oxidadas em ácido sulfênico (Cis-SOH), a Cp condensa com o grupo sulfidrila da cisteína de resolução (Cr) numa ligação disulfeto. A ausência da carga negativa do tiolato (RS-) da Cp facilita a abertura da alça que contem a Rc para longe do centro ativo, gerando a conformação aberta. No entanto, os eventos moleculares associados a alta reatividade das enzimas Ohr contra hidroperóxidos e a sua redução pela dihydrolipoamida (presente em proteínas lipoiladas), ainda está descrita de forma bem superficial. Adicionalmente, vários fatores suportam a ideia de que a Ohr seria um potencial alvo para o desenvolvimento de drogas: (i) a Ohr exibe propriedade físico-químicas únicas; (ii) as bactérias mutantes para Ohr (Δohr) são fortemente sensíveis ao stress oxidativo; (iii) indicações de que a Ohr poderá está envolvida na virulência de várias bactérias; e (iv) a ausência de Ohr em mamíferos e plantas vascularizadas. Nesta tese, vários aspetos relacionados com as enzimas Ohr foram avaliados. No Capitulo 2, foi caracterizada bioquimicamente a proteína Ohr homologa de fungo ascomiceto, Mycosphaerella fijiensis Mf_1 (MfOhr), o agente causador da doença de bananas, Sigatoka-negra. A enzima apresentou eficiente atividade contra peroxido de ácido linoleico (kobs = 3.18 (± 2.13) ×108 M-1.s-1). Além disso, através do fracionamento sub celular de protoblasto de M fijiensis seguido de western blot, foram confirmadas as predições in silico de que a MfOhr é uma proteína mitocondrial. No capítulo 3 e 4, foram descritas sete estruturas cristalográficas oriundas de dois patógenos oportunistas, uma de Xylella fastidiosa e seis de Chromobacterium violaceum (incluindo o primeiro representante do complexo entre a Ohr e o seu redutor biológico, DHL). Estas estruturas poderão representar diferentes conformações ao longo do ciclo catalítico. Adicionalmente, várias abordagens de modelagem molecular, tais como mecânica clássica (MM), mecânica molecular direcionada (SMM) e mecânica quântica híbrida (QM-MM), juntamente com ensaios experimentais com mutações pontuais, indicaram que a Ohr sofre várias mudanças conformacionais para permitir uma abertura intermitente (estado oxidado) e o retorno para uma conformação fechada mais estável (estado reduzido) da alça da arginina ao longo da catálise. Notavelmente, a dihydrolipoamide assistiu diretamente o fechamento da alça da arginina e por consequência o turnover da enzima. No capítulo 5, foi descrita a identificação de dois compostos (C-31 e C-42) que representam estudos iniciais com a finalidade de encontrar inibidores específicos para a enzima Ohr. Estes compostos foram encontrados por ab initio design e por varrimento virtual com o uso de modelos farmacofóricos. Os IC50 calculados para o C-31 e C-42 foram de 124.4-248.5 µM e 243.3-321.7 µM, respectivamente. Finalmente, esta tese descreve vários aspetos relacionados com a função da Ohr: 1 - evidências que as Ohr de eucariotos estão preferencialmente localizadas na mitocôndria e partilham várias propriedades bioquímicas com as Ohr de bactéria; 2 - a rede de interações polares entre os resíduos da tríade catalítica (Cp, Rc e Ec) contribuem fortemente para a estabilização do estado fechado, a configuração ótima para a redução de hydroperoxidos; 3 - evidências de que a formação da ligação disulfeto e a liberação do produto (álcool derivado da redução do hydroperoxido) facilitam a abertura da alça da arginina até um estado intermediários (provavelmente não o estado totalmente exposto apresentado nas estruturas cristalográficas) 4 - o mapeamento das interações entre o redutor biológico no centro ativo da Ohr; 5 - fortes indicações de que a DHL não é capaz de interagir e reagir com a Ohr na conformação fechada; 6 - os primeiros ensaios para a procura por moléculas que especificamente interajam com a Ohr, apesar de que futuros ensaios terão de ser executados para verificar a especificidade dos compostos selecionados. Assim, nós descrevemos nova informação relevante sobre uma proteína antioxidante que exibe uma alta eficiência catalítica, comparável com outras importantes enzimas removedores de hydroperoxidos, tais como glutationa peroxidases e peroxiredoxinas

A interação do citocromo c com a cardiolipina ocorre por interações eletrostáticas e hidrofóbicas. A formação do complexo citocromo c/ cardiolipina promove uma pequena mudança estrutural na proteína, que proporciona atividade peroxidásica ao citocromo c e consequentemente capacidade de oxidar substratos orgânicos, incluindo a cardiolipina. A oxidação da cardiolipina acompanhada da inserção de um grupo peróxido vem sendo relacionada à perda da interação hidrofóbica entre o complexo citocromo c/cardiolipina, que resulta no desligamento do citocromo c da membrana e na sua saída do espaço intermembranas para o citosol, onde essa proteína induz a cascata de apoptose. Neste trabalho foi avaliada a ligação do citocromo c a lipossomos contendo cardiolipina oxidada e a reatividade desta proteína com o mono-hidroperóxido da cardiolipina (TLCL(OOH)1) presente na membrana. Nossos dados mostraram que ocorre uma diminuição significativa na ligação do citocromo c a membrana oxidadas apenas quando 100% da cardiolipina presente na membrana está na forma de TLCL(OOH)1, condição que extrapolaria o que seria esperado para o sistema biológico. Análises por SDS-PAGE revelaram que o citocromo c sofre agregação na presença de membranas contendo TLCL(OOH)1, indicando que a proteína reage com este peróxido. De fato, determinamos a velocidade de reação do citocromo c com o TLCL(OOH)1 e com hidroperóxido do ácido linoléico, inseridos em membrana contendo cardiolipina (9,58 ± 0,16 x 102 M-1.s-1 e 6,91 ± 0,30 x 102 M-1.s-1, respectivamente). As velocidades de reação com os peróxidos de lipídio foram pelo menos 10 vezes superiores à velocidade medida com o peróxido de hidrogênio (5,91 ± 0,18 x101 M-1.s-1). Assim, mostramos que o citocromo c liga-se à membrana contendo hidroperóxido de cardiolipina e que reage com o mesmo promovendo a formação de agregado protéico de alto peso molecular / The interaction of cytochrome c with cardiolipin is promoted by electrostatic and hydrophobic interactions. The cytochrome c / cardiolipin complex formation causes structural changes in the protein that activates cytochrome c peroxidase activity, giving it the ability to oxidize organic substrates, including cardiolipin. The oxidation of cardiolipin coupled with a peroxide group insertion has been related to the loss of hydrophobic interactions between the cytochrome c / cardiolipin complex, resulting in cytochrome c release from the membrane and in its translocation from intermembranes space to cytosol, where this protein induces apoptosis cascade. In this work the binding of cytochrome c to liposomes containing oxidized cardiolipin and its reactivity with the membrane mono-hydroperoxides (TLCL(OOH)1) were evaluated. Our data showed a significant decrease in cytochrome c binding to oxidized membranes only when 100% of the membrane cardiolipin is in the TLCL(OOH)1 form, a condition that would extrapolate the expected concentrations that would be found in a biological system. SDS-PAGE analysis revealed that cytochrome c undergoes aggregation in the presence of membranes containing TLCL(OOH)1, indicating that this protein reacts with the peroxide. In fact, we determined the rate of cytochrome c reaction with TLCL(OOH)1 and linoleic acid hydroperoxide inserted into cardiolipin containing membranes (9.58 ± 0.16 x 102 M-1s-1 and 6.91 ± 0.30 x 102 M-1s-1,respectively). The reaction rates obtained with lipid peroxides were at least 10 times higher than that obtained with hydrogen peroxide (5.91 ± 0.18 x 101 M-1s-1).Thus we show that cytochrome c binds to membrane containing cardiolipin hydroperoxides and reacts with it promoting the formation of high molecular weight protein aggregates.

To study the role of YDL100c during the growth of Saccharomyces cerevisiae in the presence of oxidant, the wild type strain (WT) and YDL100c disrupted strain (KO) were grown at 30oC for 6 hr after adding 0.25 mM of tert-butyl hydroperoxide (t-BOOH). The cells of both strains were assayed for the expression of anti-oxidant system, trehalose accumulation, intracellular molecular oxidation level, membrane lipid peroxidation, and glutathione (GSH) content. The results show that growth of KO is slower than that of WT and the cause of growth delay is the cell death. The data also show that the molecular oxidation level is lower but the lipid peroxidation of membrane is higher in KO compared with WT in the presence of t-BOOH, indicating that ROS do cause the damage on membrane. Further, analysis of the expression of cellular defense-related genes show that expressions of GSH1, CTT1, TPS1, TSL1, and NTH1 in KO are lower than in WT, but expressions of SOD1, TRR1 and TRX1 have no difference, demonstrating that the deletion of YDL100c in S. cerevisiae affects the general and specific stress response when grown in the presence of t-BOOH. In general, the decrease in CTT1 expression is not consistent with the catalase activity assay, however, decreased expressions of GSH1 and genes involved in trehalose metabolism are consistent with the decreased GSH content and increased trehalose accumulation in KO compared with WT. Therefore, the cause of KO cell death in the presence of t-BOOH is most likely related to the decrease in cellular GSH level and trehalose accumulation.

A interação do citocromo c com a cardiolipina ocorre por interações eletrostáticas e hidrofóbicas. A formação do complexo citocromo c/ cardiolipina promove uma pequena mudança estrutural na proteína, que proporciona atividade peroxidásica ao citocromo c e consequentemente capacidade de oxidar substratos orgânicos, incluindo a cardiolipina. A oxidação da cardiolipina acompanhada da inserção de um grupo peróxido vem sendo relacionada à perda da interação hidrofóbica entre o complexo citocromo c/cardiolipina, que resulta no desligamento do citocromo c da membrana e na sua saída do espaço intermembranas para o citosol, onde essa proteína induz a cascata de apoptose. Neste trabalho foi avaliada a ligação do citocromo c a lipossomos contendo cardiolipina oxidada e a reatividade desta proteína com o mono-hidroperóxido da cardiolipina (TLCL(OOH)1) presente na membrana. Nossos dados mostraram que ocorre uma diminuição significativa na ligação do citocromo c a membrana oxidadas apenas quando 100% da cardiolipina presente na membrana está na forma de TLCL(OOH)1, condição que extrapolaria o que seria esperado para o sistema biológico. Análises por SDS-PAGE revelaram que o citocromo c sofre agregação na presença de membranas contendo TLCL(OOH)1, indicando que a proteína reage com este peróxido. De fato, determinamos a velocidade de reação do citocromo c com o TLCL(OOH)1 e com hidroperóxido do ácido linoléico, inseridos em membrana contendo cardiolipina (9,58 ± 0,16 x 102 M-1.s-1 e 6,91 ± 0,30 x 102 M-1.s-1, respectivamente). As velocidades de reação com os peróxidos de lipídio foram pelo menos 10 vezes superiores à velocidade medida com o peróxido de hidrogênio (5,91 ± 0,18 x101 M-1.s-1). Assim, mostramos que o citocromo c liga-se à membrana contendo hidroperóxido de cardiolipina e que reage com o mesmo promovendo a formação de agregado protéico de alto peso molecular / The interaction of cytochrome c with cardiolipin is promoted by electrostatic and hydrophobic interactions. The cytochrome c / cardiolipin complex formation causes structural changes in the protein that activates cytochrome c peroxidase activity, giving it the ability to oxidize organic substrates, including cardiolipin. The oxidation of cardiolipin coupled with a peroxide group insertion has been related to the loss of hydrophobic interactions between the cytochrome c / cardiolipin complex, resulting in cytochrome c release from the membrane and in its translocation from intermembranes space to cytosol, where this protein induces apoptosis cascade. In this work the binding of cytochrome c to liposomes containing oxidized cardiolipin and its reactivity with the membrane mono-hydroperoxides (TLCL(OOH)1) were evaluated. Our data showed a significant decrease in cytochrome c binding to oxidized membranes only when 100% of the membrane cardiolipin is in the TLCL(OOH)1 form, a condition that would extrapolate the expected concentrations that would be found in a biological system. SDS-PAGE analysis revealed that cytochrome c undergoes aggregation in the presence of membranes containing TLCL(OOH)1, indicating that this protein reacts with the peroxide. In fact, we determined the rate of cytochrome c reaction with TLCL(OOH)1 and linoleic acid hydroperoxide inserted into cardiolipin containing membranes (9.58 ± 0.16 x 102 M-1s-1 and 6.91 ± 0.30 x 102 M-1s-1,respectively). The reaction rates obtained with lipid peroxides were at least 10 times higher than that obtained with hydrogen peroxide (5.91 ± 0.18 x 101 M-1s-1).Thus we show that cytochrome c binds to membrane containing cardiolipin hydroperoxides and reacts with it promoting the formation of high molecular weight protein aggregates.

Ferroptosis is a recently characterized cell death pathway associated with the iron-dependent accumulation of lipid hydroperoxides in phospholipid bilayers. The origin of these hydroperoxides has been an ongoing topic of debate and many researchers argue for a lipoxygenase (LOX) enzyme-controlled mechanism of initiation, given their known role as dioxygenases of polyunsaturated fatty acids (PUFAs). In response to this, our lab investigated the induction and inhibition of ferroptosis in human embryonic kidney (HEK-293) cells transfected to overexpress the three most prevalent LOX isoforms, 5-LOX, p12-LOX, and 15-LOX-1. These studies did not support a role for LOX in the execution of ferroptosis; LOX inhibition was not associated with ferroptosis suppression and in fact, anti-ferroptotic activity was directly tied to purported LOX inhibitors’ ability to act as radical-trapping antioxidants (RTAs). We have investigated the effects of LOX inhibitors on ferroptosis in human fibrosarcoma (HT-1080) cells, the cell line in which ferroptosis was initially characterized, and mouse hippocampal neuronal (HT-22) cells, the cell line in which the closely related cell death modality oxytosis was characterized. In sum, our findings mirror those obtained in HEK-293 cells, and the effectiveness of an inhibitor is tied to its off-target RTA activity, not inhibition of LOX. Moreover, we observed suppression of ferroptosis via necrostatin-1 (Nec-1), a known receptor-interacting serine/threonine-protein kinase 1 (RIPK1) (and necroptosis) inhibitor. Herein, we show that Nec-1 is not an RTA and exerts its effects by a yet unknown mechanism which we investigate in a series of exploratory experiments. Conjugated fatty acids – particularly α-ESA – have recently been reported to induce ferroptosis by an unclear mechanism. Theorizing this phenomenon was tied to the autoxidation of α-ESA’s conjugated trienic unit, we aimed to investigate the kinetic and biological properties of natural α-ESA alongside a deuterated isotopologue. Herein, we report preliminary work to derive biologically relevant rate constants for addition and hydrogen-atom transfer (HAT) of α-ESA. Moreover, we report our progress towards the synthesis of a deuterated α-ESA which will facilitate future study alongside its natural counterpart.

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Oxidative stress is a harmful condition in a cell, tissue, or organ, caused by an imbalance between reactive oxygen species or other oxidants and the capacity of antioxidant defense systems to remove them. These oxidants cause wide-ranging damage to macromolecules, including proteins, lipids, DNA and carbohydrates. Oxidative stress is an important pathophysiologic component of a number of diseases, such as Alzheimer's disease, diabetes and certain cancers. Cells contain effective defense mechanisms to respond to oxidative stress. Despite much accumulated knowledge about these responses, their kinetics, especially the kinetics of early responses is still not clearly understood. The Yap1 transcription factor is crucial for the normal response to a variety of stress conditions including oxidative stress. Previous studies on Yap1 regulation started to measure gene expression profile at least 20 minutes after the induction of oxidative stress. Genes and pathways regulated by Yap1 in early oxidative stress response (within 20 minutes) were not identified in these studies. Here we study the kinetics of early oxidative stress response induced by the cumene hydroperoxide (CHP) in Saccharomyces cerevisiae wild type and yap1 mutant. Gene expression profiles after exposure to CHP were obtained in controlled conditions using Affymetrix Yeast Genome S98 arrays. The oxidative stress response was measured at 8 time points along 120 minutes after the addition of CHP, with the earliest time point at 3 minute after the exposure. Statistical analysis methods, including ANOVA, k-means clustering analysis, and pathway analysis were used to analyze the data. The results from this study provide a dynamic resolution of the oxidative stress responses in S. cerevisiae, and contribute to a richer understanding of the antioxidant defense systems. It also provides a global view of the roles that Yap1 plays under normal and oxidative stress conditions. / Ph. D.