In the present study, two insulin-like growth factor-binding protein 7 (IGFBP7) C-terminal-peptides were expressed as fusion proteins to bacterial verotoxin pentamerization domain as shown by Western blotting, ELISA and mass spectroscopy. Both in vivo-biotinylated recombinant products were purified from bacterial lysates by IMAC and used directly for panning along with the recombinant IGFBP7 protein using the LAC-M Camelidae naïve single domain antibody (sdAb) library. Target-specific sdAbs to both parental protein and peptide fusions were identified by phage ELISA. Twelve different clones were isolated by phage-ELISA screening and their sdAb genes were sequenced. Soluble sdAbs and their pentameric formats were expressed in TG1 E. coli, purified by IMAC and characterized by ELISA and SPR. Several sdAbs are currently under study, however anti-IGFBP7 (P12/M12) was extensively characterized and exhibited promising anti-tumorigenic effect on PANC-1 cell lines by blocking IGFBP7 promoting activity. This study provides the basis for developing a novel imaging/therapeutic reagent for targeting and treating brain tumor angiogenesis in early stages of tumorogenesis and can also be used as a molecular tool to monitor the degree of angiogenesis in gliomas which may help to improve the clinical management of brain tumors.

Complex multicellular organisms are composed of at least 200 cell types, which contain the same DNA "black box" of genetic information. It is the precise regime according to which they express their genes, exquisitely controlled by gene regulatory circuits, that defines their cellular identity, morphology and function. We have developed an in vivo biotinylation method that uses genetically encoded components in zebrafish, termed biotagging, for genome-wide regulatory analysis of defined embryonic cell populations. By labelling selected proteins in specific cell types, biotagging eliminates background inherent to analyses of complex embryonic environments via highly stringent biochemical procedures and targeting of specific interactions without the need for cell sorting. We utilised biotagging to characterise the in vivo translational landscape on polysomes as well as the transcriptional regulatory landscape in nuclei of migratory neural crest cells, which intermix with environing tissues during their migration. Our migratory neural crest translatome presented both known and novel players of the neural crest gene regulatory network. An in depth look into the active nuclear transcriptome uncovered a complex world of non-coding regulatory RNAs that potentially specify migratory neural crest identity and present evidence of active bidirectional transcription on regions of open chromatin that include putative cis-regulatory elements. Analysis of our transcribed cis-regulatory modules functionally links these elements to known genes that are key to migratory neural crest function and its derivatives. We also identified a novel cohort of circular RNAs enriched at regions of tandem duplicated genes. Last but not least, we recovered developmentally regulated long non-coding RNAs and transcribed transposable elements. To functionally dissect the biological roles of these factors, we have built two Ac/Ds-mediated in vivo toolkits for efficient screening of putative enhancers and for CRISPR/Cas9-based transcriptional modulation. Overall, our methods and findings present a comprehensive view of the active coding and non-coding landscapes of migratory neural crest on a genome-wide scale that refine the current regulatory architecture underlying neural crest identity.

In the present study, two insulin-like growth factor-binding protein 7 (IGFBP7) C-terminal-peptides were expressed as fusion proteins to bacterial verotoxin pentamerization domain as shown by Western blotting, ELISA and mass spectroscopy. Both in vivo-biotinylated recombinant products were purified from bacterial lysates by IMAC and used directly for panning along with the recombinant IGFBP7 protein using the LAC-M Camelidae naïve single domain antibody (sdAb) library. Target-specific sdAbs to both parental protein and peptide fusions were identified by phage ELISA. Twelve different clones were isolated by phage-ELISA screening and their sdAb genes were sequenced. Soluble sdAbs and their pentameric formats were expressed in TG1 E. coli, purified by IMAC and characterized by ELISA and SPR. Several sdAbs are currently under study, however anti-IGFBP7 (P12/M12) was extensively characterized and exhibited promising anti-tumorigenic effect on PANC-1 cell lines by blocking IGFBP7 promoting activity. This study provides the basis for developing a novel imaging/therapeutic reagent for targeting and treating brain tumor angiogenesis in early stages of tumorogenesis and can also be used as a molecular tool to monitor the degree of angiogenesis in gliomas which may help to improve the clinical management of brain tumors.

L’interleukine 6 (IL-6) est une cytokine qui joue un rôle essentiel dans l’inflammation. Son récepteur (IL-6R) est composé de la chaîne non signalétique IL-6Rα et de la chaîne transductrice du signal gp130, commune aux cytokines de la famille IL-6. La liaison de l’IL-6 à son récepteur permet l’activation de plusieurs voies de signalisation, notamment des voies Jak/STAT1 et préférentiellement Jak/STAT3. De façon complémentaire, nous avons démontré que l’IL-6 est capable d’activer la voie Jak/STAT5 dans les lymphocytes T CD4. L’activation de cette voie de signalisation pourrait être impliquée dans le rétrocontrôle des effets pro-inflammatoires de l’IL-6 sur les cellules T CD4. Le facteur neurotrophique ciliaire (CNTF) et la « cardiotrophin-like cytokine/cytokine-like factor 1 » (CLC/CLF) sont deux cytokines de la famille de l’IL-6 qui signalent à travers un récepteur commun, le récepteur au CNTF (CNTFR), composé du CNTFRα, « leukaemia inhibitory factor receptor β » (LIFRβ) et gp130. Toutes deux exercent des actions au niveau du système immunitaire, or la chaîne CNTFRα de leur récepteur n’y est pas exprimée. Il a été montré que le CNTFR humain peut également activer un récepteur formé des sous-unités IL-6Rα, LIFRβ et gp130. Nous avons comparé les effets du CNTF et du CLC/CLF de souris sur des transfectants exprimant LIFRβ et gp130 et les chaines α connues de la famille IL-6 (IL-6Rα, IL-11Rβ et CNTFRα). Nos résultats indiquent que le CNTF de souris, comme le CNTF humain est capable d’activer un récepteur formé de l’IL-6Rα, LIFRβ et gp130. Toutefois cette propriété n’est pas partagée par CLC/CLF et le récepteur impliqué dans les effets de cette cytokine sur le système immunitaire reste donc à identifier. L’IL-27 appartient à la famille de l’IL-6 composée d’une sous-unité cytokinique, p28, associée à un récepteur soluble « l’Epstein-Barr virus-induced gene 3» (EBI3). La sous-unité p28 peut s’associer avec le récepteur soluble CLF pour former une cytokine capable d’activer les lymphocytes T. Dans le but de caractériser cette cytokine, nous avons montré que p28/CLF agit aussi sur les lymphocytes B et permet leur différenciation en plasmocytes. Le partage de l’IL-6R par l’IL-6 et p28/CLF semble être à l’origine de la similarité des effets de ces deux cytokines. De plus, nous avons observé des effets semblables à ceux de l’IL-6 suite à l’association de la sous-unité p28 seule avec la chaîne IL-6Rα. En effet, afin de mieux caractériser la cytokine p28/CLF, nous avons étudié les effets dus au recrutement de la chaîne IL-6Rα par la sous-unité p28. Les cytokines de la famille de l’IL-6 sont composées de quatre hélices α disposées de façon anti-parallèle deux à deux. La sous-unité p28 possède, au niveau d’une boucle reliant deux hélices α, un motif de plusieurs acides glutamiques consécutifs (motif polyE) qui n’est retrouvé dans aucune autre cytokine de cette famille. Nous avons démontré que ce motif est impliqué dans la liaison de cette sous-unité avec l’hydroxyapatite et l’os. Cette caractéristique de p28 pourrait permettre un ciblage de l’IL-27 (p28/EBI3) et de p28/CLF préférentiellement vers la niche endostéale des cellules souches et des cellules immunitaires. / Interleukin 6 (IL-6) is a well known cytokine, characterized for its essential function in inflammation. IL-6 receptor (IL-6R) is composed of IL-6Rα, an unsignalling chain, associated with the signaling transducing chain gp130. This glycoprotein is shared by all IL-6 family cytokines. After binding with its receptor, IL-6 preferentially induces the activation of the Jak/STAT3 pathway but can also activate the Jak/STAT1 pathway. Unexpectedly we demonstrated that IL-6 can activate the Jak/STAT5 pathway in CD4 T cells. This STAT5 could act as negative feedback mechanism in response to the pro-inflammatory effects induced by an excess of IL-6. Ciliary neurotrophic factor (CNTF) and cardiotrophin-like cytokine (CLC/CLF) both belong to the IL-6 cytokine family and share the same receptor, the CNTF receptor (CNTFR). CNTFR is composed of CNTFRα, leukaemia inhibitory factor receptor β (LIFRβ) and the glycoprotein gp130. Interestingly, the CNTFRα chain is not expressed by immune cells even though CNTF and CLC/CLF are active on these cells. These effects can be due to the formation of a complex between cytokine and CNTFRα, which can be shedded. This complex can then activate cells expressing only gp130 and LIFRβ. In human, it has been demonstrated that the CNTFRα chain can be substitute with IL-6Rα. Here, we compare mouse CNTF- and CLC/CLF-induced effects in transfected cells expressing LIFRβ, gp130 and different α chains belonging to the IL-6 family (IL-6Rα, IL-11Rα or CNTFRα). Our data demonstrate that like human CNTF, mouse CNTF is able to activate a receptor comprising of IL-6Rα, gp130 and LIFRβ. However, this property is not shared with CLC/CLF. Therefore, second receptor for this cytokine within the immune system still remains to be identify. Interleukin 27 (IL-27) belongs to the IL-6 cytokine family and is composed of the cytokine subunit p28 associated with a soluble receptor chain Epstein-Barr virus-induced gene 3 (EBI3). We demonstrate that the p28 subunit can bind the soluble receptor CLF to form a new dimeric cytokine named p28/CLF. This cytokine is active on T cells and our study demonstrates its activity on B cells. Our results show that p28/CLF sustains plasma cell differentiation. Those IL-6-like properties can be explained by the use of a common receptor, IL-6R. Moreover, our findings demonstrate that p28 has IL-6-like properties when associated with IL-6Rα. In order to better characterize p28/CLF, we next studied effects of to the recruitment of the IL-6Rα chain by p28 subunit. Cytokines belonging to the IL-6 family share a structural particularity by forming a four helix bundle cytokines family. The p28 subunit uniquely expresses a motif composed of a dozen of glutamic acids (polyE motif). We demonstrate that this motif permits p28 binding to hydroxyapatite and bone matrix. This observation could allow a preferential targeting to bone of IL-27 (p28/EBI3) and p28/CLF, and specifically a targeting of stem or immune cells to endosteal niches.

L’interleukine 6 (IL-6) est une cytokine qui joue un rôle essentiel dans l’inflammation. Son récepteur (IL-6R) est composé de la chaîne non signalétique IL-6Rα et de la chaîne transductrice du signal gp130, commune aux cytokines de la famille IL-6. La liaison de l’IL-6 à son récepteur permet l’activation de plusieurs voies de signalisation, notamment des voies Jak/STAT1 et préférentiellement Jak/STAT3. De façon complémentaire, nous avons démontré que l’IL-6 est capable d’activer la voie Jak/STAT5 dans les lymphocytes T CD4. L’activation de cette voie de signalisation pourrait être impliquée dans le rétrocontrôle des effets pro-inflammatoires de l’IL-6 sur les cellules T CD4. Le facteur neurotrophique ciliaire (CNTF) et la « cardiotrophin-like cytokine/cytokine-like factor 1 » (CLC/CLF) sont deux cytokines de la famille de l’IL-6 qui signalent à travers un récepteur commun, le récepteur au CNTF (CNTFR), composé du CNTFRα, « leukaemia inhibitory factor receptor β » (LIFRβ) et gp130. Toutes deux exercent des actions au niveau du système immunitaire, or la chaîne CNTFRα de leur récepteur n’y est pas exprimée. Il a été montré que le CNTFR humain peut également activer un récepteur formé des sous-unités IL-6Rα, LIFRβ et gp130. Nous avons comparé les effets du CNTF et du CLC/CLF de souris sur des transfectants exprimant LIFRβ et gp130 et les chaines α connues de la famille IL-6 (IL-6Rα, IL-11Rβ et CNTFRα). Nos résultats indiquent que le CNTF de souris, comme le CNTF humain est capable d’activer un récepteur formé de l’IL-6Rα, LIFRβ et gp130. Toutefois cette propriété n’est pas partagée par CLC/CLF et le récepteur impliqué dans les effets de cette cytokine sur le système immunitaire reste donc à identifier. L’IL-27 appartient à la famille de l’IL-6 composée d’une sous-unité cytokinique, p28, associée à un récepteur soluble « l’Epstein-Barr virus-induced gene 3» (EBI3). La sous-unité p28 peut s’associer avec le récepteur soluble CLF pour former une cytokine capable d’activer les lymphocytes T. Dans le but de caractériser cette cytokine, nous avons montré que p28/CLF agit aussi sur les lymphocytes B et permet leur différenciation en plasmocytes. Le partage de l’IL-6R par l’IL-6 et p28/CLF semble être à l’origine de la similarité des effets de ces deux cytokines. De plus, nous avons observé des effets semblables à ceux de l’IL-6 suite à l’association de la sous-unité p28 seule avec la chaîne IL-6Rα. En effet, afin de mieux caractériser la cytokine p28/CLF, nous avons étudié les effets dus au recrutement de la chaîne IL-6Rα par la sous-unité p28. Les cytokines de la famille de l’IL-6 sont composées de quatre hélices α disposées de façon anti-parallèle deux à deux. La sous-unité p28 possède, au niveau d’une boucle reliant deux hélices α, un motif de plusieurs acides glutamiques consécutifs (motif polyE) qui n’est retrouvé dans aucune autre cytokine de cette famille. Nous avons démontré que ce motif est impliqué dans la liaison de cette sous-unité avec l’hydroxyapatite et l’os. Cette caractéristique de p28 pourrait permettre un ciblage de l’IL-27 (p28/EBI3) et de p28/CLF préférentiellement vers la niche endostéale des cellules souches et des cellules immunitaires. / Interleukin 6 (IL-6) is a well known cytokine, characterized for its essential function in inflammation. IL-6 receptor (IL-6R) is composed of IL-6Rα, an unsignalling chain, associated with the signaling transducing chain gp130. This glycoprotein is shared by all IL-6 family cytokines. After binding with its receptor, IL-6 preferentially induces the activation of the Jak/STAT3 pathway but can also activate the Jak/STAT1 pathway. Unexpectedly we demonstrated that IL-6 can activate the Jak/STAT5 pathway in CD4 T cells. This STAT5 could act as negative feedback mechanism in response to the pro-inflammatory effects induced by an excess of IL-6. Ciliary neurotrophic factor (CNTF) and cardiotrophin-like cytokine (CLC/CLF) both belong to the IL-6 cytokine family and share the same receptor, the CNTF receptor (CNTFR). CNTFR is composed of CNTFRα, leukaemia inhibitory factor receptor β (LIFRβ) and the glycoprotein gp130. Interestingly, the CNTFRα chain is not expressed by immune cells even though CNTF and CLC/CLF are active on these cells. These effects can be due to the formation of a complex between cytokine and CNTFRα, which can be shedded. This complex can then activate cells expressing only gp130 and LIFRβ. In human, it has been demonstrated that the CNTFRα chain can be substitute with IL-6Rα. Here, we compare mouse CNTF- and CLC/CLF-induced effects in transfected cells expressing LIFRβ, gp130 and different α chains belonging to the IL-6 family (IL-6Rα, IL-11Rα or CNTFRα). Our data demonstrate that like human CNTF, mouse CNTF is able to activate a receptor comprising of IL-6Rα, gp130 and LIFRβ. However, this property is not shared with CLC/CLF. Therefore, second receptor for this cytokine within the immune system still remains to be identify. Interleukin 27 (IL-27) belongs to the IL-6 cytokine family and is composed of the cytokine subunit p28 associated with a soluble receptor chain Epstein-Barr virus-induced gene 3 (EBI3). We demonstrate that the p28 subunit can bind the soluble receptor CLF to form a new dimeric cytokine named p28/CLF. This cytokine is active on T cells and our study demonstrates its activity on B cells. Our results show that p28/CLF sustains plasma cell differentiation. Those IL-6-like properties can be explained by the use of a common receptor, IL-6R. Moreover, our findings demonstrate that p28 has IL-6-like properties when associated with IL-6Rα. In order to better characterize p28/CLF, we next studied effects of to the recruitment of the IL-6Rα chain by p28 subunit. Cytokines belonging to the IL-6 family share a structural particularity by forming a four helix bundle cytokines family. The p28 subunit uniquely expresses a motif composed of a dozen of glutamic acids (polyE motif). We demonstrate that this motif permits p28 binding to hydroxyapatite and bone matrix. This observation could allow a preferential targeting to bone of IL-27 (p28/EBI3) and p28/CLF, and specifically a targeting of stem or immune cells to endosteal niches.