The goal of this research project was to synthesize a small library of 3- and 5-arylisoxazoles. These compounds are of interest because of potential biological activity similar to Fipronil. Fipronil is used commercially in the agrochemical industry and exhibits pesticidal activity as a noncompetitive inhibitor of the GABA receptor. By deleting the amino group normally at the 5-position and the cyano group normally at the 3-position and changing the atoms in the heterocyclic ring from containing two nitrogen atoms to one nitrogen and one oxygen atom, we hope to create changes in the binding so the geometry of the GABA receptor may be better understood.The synthesis of our target compounds consisted of many steps. First, brominated intermediates were made from commercially available compounds. The brominated intermediates were converted to aldehydes, which then produced oximes. The oximes were then combined with alkynes through a 1,3-dipolar cycloaddition to form the arylisoxazoles. / Department of Chemistry

Dentre os diversos tipos de patologias, as doenças negligenciadas apresentam grande prevalência na população em países tropicais. A leishmaniose é uma doença negligenciada endêmica no Brasil, com incidência em áreas urbanas e rurais. A ineficácia e elevados efeitos colaterais de fármacos como a Anfotericina B, que é atualmente empregada, tem levado a pesquisa e desenvolvimento de substâncias bioativas antileishmaniose. Um alvo macromolecular de interesse terapêutico é a cisteíno protease B (CPB) devido a sua atuação e importância em diversas etapas do ciclo de vida da Leishmania. Assim, o Grupo de Química Medicinal (NEQUIMED) estuda inibidores covalentes reversíveis da cisteíno protease CPB com potencial atividade antileishmaniose. Neste projeto, a síntese de derivados de dipeptidil-nitrilas é realizada para que com potencial atividade inibidora da CPB e antileishmaniose seja acessado por meio dos ensaios biológicos correspondentes. Neste projeto, derivados e estereoisômeros do composto N-(1-cianociclopropil)-3-fenil-2-((-2,2,2-trifluoro-1-fenil-etil)amino) propanamida foram produzidos e caracterizados. 15 substâncias foram produzidas e purificadas por HPLC e sua pureza determinada por medição de ponto de fusão e HPLC-MS, com caracterização por RMN (1H e 13C) e FT-IR. A partir desta série, a estereosseletividade enzimática para a CPB será acessada por meio de ensaios bioquímicos e biofísicos e também por ensaios celulares a serem realizados por outros membros do grupo. / Among several types of pathologies, neglected tropical diseases present high prevalence in the population in tropical countries. Leishmaniasis is a neglected disease which endemic in Brazil, with incidence in urban and rural areas. The ineffectiveness and numerous side effects of drugs such as amphotericin B, which is currently used for treatment has led to the research and development of bioactive antileishmanial substances. A macromolecular target of therapeutic interest is the enzyme cysteine protease B (CPB) because of its performance and importance at various stages of the Leishmania life cycle. Thus, the Medicinal Chemistry Group (NEQUIMED) studies covalent inhibitors of cysteine protease CPB with potential antileishmanial activity. In this study, the synthesis of dipeptidyl nitrile derivatives is performed so that with potential inhibitory activity for CPB and antileishmaniasis is accessed through the corresponding biological assays. In this project, it was produced and characterized derivatives and stereoisomers of the compound N-(1-cyanocyclopropyl)-3-phenyl-2-((2,2,2-trifluoro-1-phenyl-ethyl)amino)propanamide. 15 substances were produced and purified by HPLC and determined purity by melting point measurement and HPLC-MS, characterizing by NMR (1H and 13C) and FT-IR. From this series, the enzymatic stereoselectivity for CPB will be accessed through biochemical and biophysical assays and by cellular assays to be performed by other members of the group.

Part I: Racemic and asymmetric syntheses of a new substance with prospective antidepressant properties were achieved. In vitro assays with synthetic racemates (±)-25 and (±)-26 suggested that the former is a relatively selective inhibitor of serotonin transporter whereas the latter is a more balanced inhibitor of both serotonin and norepinephrine transporter. An initial approach to enantiomers of 25 and 26 via resolution of carboxylic acids 21 and 22 was unsuccessful but a de novo strategy which introduced asymmetry by means of Charette enantioselective cyclopropanation led to (+)-25, (-)-25, (+)-26 and (-)-26. In vitro assays with (+)-26, now known as synosutine synthesis/OSU), indicate that this substance is a highly effective dual inhibitor of serotonin and norepinephrine transporter. With IC₅₀ and K[subscript i] values in the 1-2 nM range, (+)-26 compares favorably with Eli Lilly's duloxetine (Cymbalta®) as a dual reuptake inhibitor of serotonin and norepinephrine and is thus a potential candidate for development as a drug for treatment of clinical depression. Synosutine was also assayed in vivo for its binding to human monoamine transporters. These studies indicate that synosutine, with a K[subscript i] of 1.2 nM for norepinephrine and 2.1 nM for serotonin, is a more balanced inhibitor than duloxetin. Part II: Synthetic studies towards the tetracyclic core structure of neomangicol A (129) led to advanced intermediate 245 which bears rings A and D of the neomangicol nucleus. This bicylic enone carries the correct stereochemical imprint for tetracycle 129 at C5, C6 and C14 and it contains all of carbon atoms needed to assemble the remaining two rings. Synthesis of bicyclic lactone 170, the precursor for ring A, was accomplished from the monoterpene (S)-(+)-carvone via radical cyclization and a series of Baeyer-Villiger oxidations as the key steps. Alkylation of 170 with alkyl iodide 217, obtained from the monoterpene (S)-(-)-citronellol furnished advanced intermediate 218 which was converted into diene 244. Ring closing metathesis of 244 with Grubbs-Hoveyda second generation catalyst afforded 245. Exploratory functionalization of 245 was carried out for the purpose of assembling rings B and C of the complete neomangicol skeleton. / Graduation date: 2012

PolySialic acid (polySia) is a linear carbohydrate homopolymer of α- 2,8-linked sialic acids and a posttranslational modification of NCAM (neural cell adhesion molecule), biosynthesized by combined action of two polysialyltransferase enzymes, ST8SiaIV(PST) and ST8SiaII(STX). PolySia alters NCAM-dependent cell adhesion that is crucial for the CNS development. In adulthood, polySia expression is largely absent persisting only in areas of the brain associated with neuronal plasticity. Significantly, a number of malignant tumours re-express polySia and there is considerable evidence that its presence is related to higher malignancy, invasion and metastasis. The hypothesis underpinning this project is that inhibition of polySia biosynthesis will prevent (or reduce) tumour cell migration and invasion, thereby reducing the incidence of metastasis, which will lead to higher patient survival. The work reported in this thesis describes efforts towards the synthesis polysialyltransferase inhibitors that are structural analogues of CMP-Neu5Ac, the natural substrate. Specifically, development of methodology to synthesise building blocks suitable for conjugation as inhibitors is described. Quinic acid-based substrate analogues were explored, with a focus on development of chemistry to achieve substitution of C1-OH. Several protected quinic acid-based compounds were synthesized, and deoxygenation of the C1-OH through the use of a Barton-McCombie reaction was accomplished successfully, allowing an attempt to introduce different aliphatic groups at C1 position using the Mukayiama reaction. Synthesis of a cytidine building block, suitable for conjugation to either quinic acid or sialic acid is also reported. In parallel, studies towards the development of sialoside disulfide analogues are described, with novel conditions identified for their synthesis.

The overwhelming occurrence and structural diversity of carbohydrates in Nature indicate their importance in a range of fundamental life processes. Indeed, it is this diversity that has lead to the two equally diverse groups of carbohydrate-processing enzymes, namely the glycoside hydrolases and glycosyl transferases. Thus, understanding the role of both carbohydrates and their processing enzymes in biological systems has attracted significant attention. This thesis, firstly, describes endeavours towards the synthesis of an inositol ?- amino acid, along with a series of sugar α-substituted carboxylic acid esters, utilising an extension of the modified Corey-Link reaction. The emphasis of the thesis is then shifted towards the synthesis of a putative inhibitor of a family GH26 lichenase from Clostridium thermocellum (CtLic26A). The preparation of 2-deoxy-2-fluoro-β-laminarbiosyl fluoride 1 is described, along with elaboration into oligosaccharides utilising AbgE358G glycosynthase technology. Crystallographic investigations indicated that the transition state adopted by CtLic26A is in stark contrast to that utilised by the related family GH26 mannanase from Pseudomonas cellulose (Man26A). ... Following on from this work, expanding the role of the AbgE358G glycosynthase acceptor repertoire to accommodate inositol substrates was explored, furthering the synthetic utility of this enzyme. Thus, a number of inositol acceptors bearing an aryl anchor, for example 2, were prepared and shown to be surrogates for carbohydrate acceptors. ... The thesis then describes the synthesis of an acetamide derivative of 1-epivalienamine, namely 3, a putative inhibitor of β-N-acetylglucosaminidases. Both the synthesis of 3, along with kinetic data for four β-N-acetylglucosaminidases, is reported; as well, Western blot analysis indicated no inhibition of a recombinant OGTase. ... Related to the preparation of a putative inhibitor of β-N-acetylglucosaminidases was the synthesis of a conformationally rigid carbocycle derivative of PUGNAc 4, along with two other derivatives 5 and 6. These compounds were also tested against four β-N-acetylglucosaminidases and a recombinant OGTase. ... Finally, the synthesis of a mechanism-based inhibitor of family GH3 β-Nacetylglucosaminidases, namely 2-acetamido-2-deoxy-5-fluoro-β-D-glucopyranosyl fluoride 7, is described. The incorporation of an azido moiety allows for the utilisation of 8 as an effective probe of β-N-acetylglucosaminidases. ...

[Truncated abstract] The development of several carbohydrate-based pharmaceuticals has stimulated an increased interest in the field of carbohydrate chemistry. The discovery of Acarbose and invention of Miglitol, treatments for type II diabetes, as well as the influenza treatments, Relenza and Tamiflu, have been largely responsible for this increased interest. These treatments operate by the inhibition of glycoside hydrolases, a group of enzymes important in a variety of biological processes. This thesis involves the study of a group of glycoside hydrolase inhibitors known as azasugars, which are nitrogen-containing sugar mimics . . . The final chapter, Chapter 4, focuses on the testing of these disaccharides as a possible alternative carbohydrate source for pre-term infants. Initially, commercially available glycoside hydrolases were used to detect any hydrolysis of the four disaccharides, with (206) exhibiting the most promising results (to provide D-glucose and D-galactose). Detailed kinetic studies were then conducted using homogenates obtained from pig intestinal mucosa. Unfortunately, the results indicated that (206) was unsuitable as an alternative carbohydrate source for pre-term infants.

No description available.

The design of biomaterials, historically initiated and developed by physicians and engineers, in the last decades has slowly shifted toward a more biochemical based approach. For the replacement, repair and regeneration of tissues scientists are now focusing on materials that stimulate specific biological response at the molecular level. These biomaterials have already shown interesting applications in cell proliferation, differentiation, and extracellular matrix production and organization when the material modifications are designed to elicit specific interactions with cell integrins. In the present work we propose the application of this strategy for the development of blood-compatible materials. We first identified, in the coagulation cascade a key enzyme that constitute a valuable biological target for the development of anti-thrombogenic compounds. Piperazinyl-amide derivatives of N-alfa-(3-trifluoromethyl-benzenesulfonyl)-L-arginine were synthesized as graftable thrombin inhibitors. These inhibitors provided a spacer arm for surface grafting and a fluorine tag for XPS (X-ray photoelectron spectroscopy) detection. The possible disturbance of biological activity due to a variable spacer-arm fixed on the N-4 piperazinyl position was evaluated in vitro against human alfa-thrombin, in silico by molecular modelling and via X-ray diffraction study. Selected inhibitors, having inhibition potency in the mM range, were grafted on polyesters surface via wet chemistry and photochemical activation treatments. Wet chemistry surface grafting was performed by specific hydroxyl chain-ends activation and resulted in bioactive molecules fixation of 20-300pmol/cm2. The photochemical grafting was performed using a molecular clip providing an aromatic azide, for nitrene insertion into a polymer, and an activated ester for grafting of tag compounds. This grafting technique resulted in a dramatic increase in fixed bioactive signals (up to nmol/cm2). The material blood-compatibilization induced by the surface fixation of the inhibitors, was measured by a static blood clot weight measurement test. The wet chemistry grafting technique resulted in moderate blood-compatibilization while by the photochemical grafting method important decrease in surface blood clot formation was observed. In the latter case, the blood response to material contact was found to be strongly affected by the polyester surface photo-degradation induced by the activation treatment.

The design of biomaterials, historically initiated and developed by physicians and engineers, in the last decades has slowly shifted toward a more biochemical based approach. For the replacement, repair and regeneration of tissues scientists are now focusing on materials that stimulate specific biological response at the molecular level. These biomaterials have already shown interesting applications in cell proliferation, differentiation, and extracellular matrix production and organization when the material modifications are designed to elicit specific interactions with cell integrins. In the present work we propose the application of this strategy for the development of blood-compatible materials. We first identified, in the coagulation cascade a key enzyme that constitute a valuable biological target for the development of anti-thrombogenic compounds. Piperazinyl-amide derivatives of N-alfa-(3-trifluoromethyl-benzenesulfonyl)-L-arginine were synthesized as graftable thrombin inhibitors. These inhibitors provided a spacer arm for surface grafting and a fluorine tag for XPS (X-ray photoelectron spectroscopy) detection. The possible disturbance of biological activity due to a variable spacer-arm fixed on the N-4 piperazinyl position was evaluated in vitro against human alfa-thrombin, in silico by molecular modelling and via X-ray diffraction study. Selected inhibitors, having inhibition potency in the mM range, were grafted on polyesters surface via wet chemistry and photochemical activation treatments. Wet chemistry surface grafting was performed by specific hydroxyl chain-ends activation and resulted in bioactive molecules fixation of 20-300pmol/cm2. The photochemical grafting was performed using a molecular clip providing an aromatic azide, for nitrene insertion into a polymer, and an activated ester for grafting of tag compounds. This grafting technique resulted in a dramatic increase in fixed bioactive signals (up to nmol/cm2). The material blood-compatibilization induced by the surface fixation of the inhibitors, was measured by a static blood clot weight measurement test. The wet chemistry grafting technique resulted in moderate blood-compatibilization while by the photochemical grafting method important decrease in surface blood clot formation was observed. In the latter case, the blood response to material contact was found to be strongly affected by the polyester surface photo-degradation induced by the activation treatment.