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Considérées comme des menaces pour les écosystèmes marins tropicaux et subtropicaux, les proliférations de macroalgues sont susceptibles de modifier le fonctionnement et la structure des récifs coralliens. Le genre Asparagopsis (Rhodophyta) est connu pour être largement distribué, introduit et parfois invasif dans certaines régions comme en Méditerranée occidentale. Le premier objectif était de corréler le métabolisme spécialisé et la bioactivité de l’algue à son génotype, et éventuellement à son caractère proliférant. Aucune corrélation génétique/métabolomique n’a été démontrée, ce qui laisse entendre que le métabolisme macroalgal serait principalement influencé par l'environnement et/ou sa flore microbienne associée. En milieu tempéré, A. taxiformis et A. armata présentent des signatures métabolomiques globalement similaires et associées à une bioactivité significativement plus importante qu'en milieu tropical. Cependant, même lorsqu’elle a été introduite, une même lignée génétique et un même phénotype chimique peuvent présenter des caractères proliférants opposés. En milieu tropical, les extraits de macroalgues testés in situ sur 4 espèces de coraux n'ont provoqué que de faibles blanchissements. En milieu tempéré, aucun effet biologique de l’algue n’a été enregistré sur le corail Astroides calycularis. Par contre des expériences en aquarium ont permis de montrer qu’A. taxiformis pouvait exprimer un métabolisme spécifique avec une bioactivité augmentée après 10 jours de contact avec ce corail. En conclusion, qu’elle soit indigène ou introduite, A. taxiformis exerce peu d’effets sur la santé des coraux, et le caractère invasif de cette algue reste une source de débat. / Considered as a major threat for sub–tropical and tropical ecosystems, macroalgal proliferations are susceptible to modify the structure and the functioning of coral reefs. The genus Asparagopsis (Rhodophyta) is known to be widespread, introduced and sometimes invasive in certain regions such as the Western Mediterranean Sea. The first objective of this thesis was to correlate the algal specialized metabolism and its bioactivity with its genotype, and eventually with its proliferation trait. No correlation between genetics and metabolomics has been demonstrated, which would suggest the main influence of environmental factors and/or the associated microbial diversity on the algal metabolism. In temperate regions, A. taxiformis and A. armata showed similar metabolomic fingerprints with bioactivities significantly higher than in tropical regions. However, even when it is introduced, a given genetic lineage and a given chemical phenotype can exhibit opposite proliferative traits. In tropical areas, algal extracts tested in situ on 4 coral species did not lead to any coral bleaching. In temperate areas, no biological effect of the alga was recorded on Astroides calycularis. However, some aquarium experiments allowed to show that A. taxiformis can express a specific metabolism, with an increased bioactivity after 10–days of contact with this coral. To conclude, either indigenous or introduced, A. taxiformis poorly affects corals’ health, and thus the invasiveness of this alga remains a matter of debate.

The resilience of coral reefs depends, among others, upon local physical and biological characteristics. This dissertation focused on how herbivory, structural complexity, and sedimentation can impact the structure, function, and, ultimately, resilience of Caribbean coral reefs. We filled an important knowledge gap related to trophic niche and ecological roles of surgeonfishes (A. coeruleus and A. tractus), two of the most important herbivorous fishes in the Caribbean. We showed that both species feed primarily on turf algae preventing further progression of algal succession while A. tractus may also help reduce macroalgal abundance by targeting common macroalgal species such as Dictyota spp. We used a factorial experiment to analyze the interactive effects of herbivory (exclosure vs. open plots) and reef structural complexity (vertical vs. horizontal substrate orientation), on the development of benthic communities. We found that vertical substrates were quickly dominated by crustose algae regardless of herbivory treatment while succession of horizontal substrates was determined by herbivory. Our results suggest that at small scale, reef complexity is a major factor determining algal community structure. We investigated why, despite high levels of herbivory, coral cover in South Florida has failed to recover. We surveyed benthic composition, grazing and abiotic characteristics along six spur and groove reefs in the Florida Keys. Using boosted regression tree analyses, we found that sediment abundance was the best predictor of both juvenile and adult corals, which could explain the failure of coral recovery. We studied spatial and temporal changes of reef communities of reefs in Havana, Cuba where global and local stressors have affected coral communities while overfishing and nutrient enrichment has led to low herbivory levels. Our surveys revealed a region-wide high abundance of algae (~60%) as a consequence of heavy overfishing with likely negative consequences on coral recovery. In summary, my dissertation showed context-depend effects of herbivory, structural complexity, and sediment on Caribbean coral reefs. While reduction of herbivory can often suppress coral recovery, on coral reefs with robust herbivore populations, physical factors such as structural complexity and sediment may still limit coral recovery and fundamentally impact reef resilience.

The nutrition bound in macroalgae, also known as seaweed, contains high amounts of all the nutrients, micronutrients, vitamins and plant hormones, necessary for plants, animals and humans. Totally for free it is floating in the oceans around the world and has been harvested and used by people for thousands of years. A problem that has arisen in the wake of Industrialism during the past 200 years is that human beings spread non-desirable substancesto air, water and soil, for example heavy metals. Macroalgae accumulate the heavy metals, which may become a problem if we want to eat seaweed or use it to grow plants in.  In a growth trial using macroalgal compost made from Fucus radicans collected from the Baltic Sea, the uptake heavy metals in the edible tubers of potatoes of the cultivar ‘Cherie’ was investigated. The following heavy metals were analyzed: lead(Pb), cadmium (Cd), mercury (Hg), arsenic (As) and copper (Cu). There were no differences in the uptake of heavy metal between potatoes grown in macroalgal compost and soil, but the potato tubers from both cultivations contained concentrations of Cd and As higher than those normally found in Swedish potatoes. The concentrations are, however, much lower than the limits set by EFSA. The macroalgal compost and the soil used in the experiment were also analyzed for heavy metal content. The Cd concentration in the compost exceeded the limit for Swedish compost. However, the high levels of Cd in the compost were not reflected in the Cd content of the potato tubers. Soil conductivity and pH values were also investigated. The high conductivityof the macroalgal compost was probably due to insufficient rinsing of the macroalgae, and thus it was not ideal for use in crop cultivation. In spite of this, the crop yield was good. In conclusion, macroalgal compost can be recommended as a cultivation substrate for potatoes. / Den näring som finns bunden i makroalger, även kallad tång, innehåller rikliga mängder av alla näringsämnen, spårämnen, vitaminer och växthormoner som växter, djur och människor behöver. Alldeles gratis flyter den omkring i världshaven och har skördats och använts av människan under tusentals år. Problemet som uppstått i industrialismens spår de senaste 200 åren är att människan sprider icke önskvärda ämnen till luft, vatten och jord, t.ex. tungmetaller. Makroalger ackumulerar dessa, vilket kan bli ett problem om vi vill äta eller odla i tång.  Vid ett odlingsförsök med potatis i tångkompost av Fucus radicans från Östersjön undersöktes metallupptaget i de ätbara knölarna i potatis av sorten ’Cherie’. De tungmetaller som analyserades var bly (Pb), kadmium (Cd), kvicksilver (Hg), arsenik (As) och koppar (Cu). Analysrapporten visade ingen skillnad i upptag av tungmetaller mellan potatis som odlats i tångkompost eller i jord; däremot innehöll knölarna från båda odlingarna högre halter av kadmium och arsenik än normalvärdena i svensk potatis. Halterna är dock långt under EFSA:s gränsvärden. Även odlingssubstraten, dvs. tångkomposten och jorden undersöktes för tungmetallförekomst. Kadmiumhalterna i tångkomposten översteg gränsvärdet för svenska kompostjordar, men de höga kadmiumhalterna reflekterades inte i potatisknölarnas kadmiuminnehåll. Odlingssubstratens ledningstal och pH-värden undersöktes också. Tångkompostens höga ledningstal (10,8 mS/cm) berodde antagligen på otillräcklig sköljning och gjorde den inte idealisk för odling. Trots detta blev skördeutfallet gott. Således kan tångkompost rekommenderas som odlingssubstrat för potatis.

Les proliférations de microalgues peuvent être nocives. L'augmentation récente de la fréquence et de l’étendue géographique des efflorescences de dinoflagellés benthiques toxiques comme Ostreopsis cf. ovata peut poser de réels problèmes de santé publique. La côte méditerranéenne Nord-Occidentale (lieu de cette étude) est l'une des nombreuses régions méditerranéennes où les proliférations d'algues nuisibles représentent une menace pour l’économie touristique. Dans les années à venir, une attention particulière devra être portée à la gestion et la prévision des proliférations de ces microalgues nuisibles benthiques et c'est dans ce contexte que cette étude a été menée. Une étude bibliographique portant sur les proliférations d’Ostreopsis spp. indique un manque important de données en relation avec l'écologie d’O. cf. ovata, en particulier concernant les substrats biotiques, ainsi que les communautés les habitats benthiques et, par conséquent, les rôles éventuels que ceux-ci peuvent jouer en tant que stimulateurs majeurs des efflorescences d’Ostreopsis spp. Durant les étés 2015 et 2016, des expériences in situ de courte durée ont été menées sur les récifs côtiers et ont été complétées par des expériences en laboratoire. Les résultats obtenus ont permis d’établir que quatre communautés distinctes de macroalgues abritent des abondances différentes d’O. cf. ovata. En particulier, les abondances les plus élevées ont été enregistrées dans des sites dominés par des structures communautaires peu complexes ; Turf et Dictyotales, alors que les sites dominés par des communautés complexes de Cystoseira n’ont montré aucune prolifération significative de microalgues. Ces résultats impliquent que les régions côtières dominées par les communautés composées de Cystoseira spp. pourraient potentiellement réduire les proliférations de Ostreopsis spp. En outre, d’autres facteurs abiotiques, tels que les concentrations en nutriments et métaux traces, ne contribuent pas (ou peu) à expliquer la dynamique des populations de O. cf. ovata. Les multiples facteurs de stress d’origine anthropique continueront à influencer le fonctionnement de l’écosystème marin. La compréhension de ces impacts et la façon dont ils influencent la dynamique des dinoflagellés benthiques toxiques est impérative pour prévoir, gérer et éventuellement réduire ces proliférations, à l’échelle de l’océan mondial. / Algal blooms can be harmful. The global management and forecasting of benthic harmful algal blooms (BHABs) will be of increasing importance in the years ahead and that is what this study sets out to address. The increase over recent decades, in both frequency and geographical range, of the potentially harmful benthic dinoflagellate Ostreopsis cf. ovata can pose real problems for human health. The French Côte d’Azur, the location for this study, is just one of many Mediterranean areas where harmful algal blooms pose a potential economic threat to a tourist-based economy. A review of the existing literature on Ostreopsis spp. blooms shows a severe lack of information about the ecology of O. cf. ovata in relation to biotic substrates, communities and habitats and thus any possible roles these may play in fostering major Ostreopsis spp. blooms. Through a series of in situ experiments on temperate reefs on the Côte d’Azur over the summers of 2015 and 2016 with follow-up experiments in the laboratory, this study establishes that four distinct macroalgal communities harbour different O. cf. ovata abundances. The results indicated that higher abundances were recorded in sites which were dominated by less complex community structures; Turf and Dicyotales, while sites with Cystoseira spp. communities present did not harbour significant microalgal blooms. These results imply that coastal regions with a dominance of Cystoseira-composed-communities could potentially be less prone to blooms or even inhibit Ostreopsis spp. proliferation. Although, no clear relationship was found between inorganic nutrient concentrations and O. cf. ovata abundances, it was observed that in the bloom onset period, nitrogen compounds were higher than in the rest of the study period (both in 2015 and 2016). Multiple human stressors will continue to impact marine vegetation, understanding these impacts and how they then influence bloom dynamics is imperative for the global management and mitigation of BHABs.

Field and laboratory studies were used to elucidate the factors affecting temporal and spatial variations of species abundance and structure of macroalgal assemblage and environmental variables between fish farming (FFA) and non-fish farming (NFFA) areas in Hsiao-Lu-Chiao island, a coral island in southwestern Taiwan. Four experiments have been approached: 1. field surveys of macroalgal assemblage structure on 5-m and 10-m depth at 3 sampling sites at FFA (FFA1, FFA2 and FFA3) and 1 sampling site at NFFA from September 2004, January 2005 and April 2005; 2.the relationship between abiotic (monthly maximum air temperature, monthly minimum air temperature, monthly mean air temperature, monthly cumulative precipitation, monthly cumulative irradiance, seawater temperature, light extinction coefficient, water motion, and nutrient (NO3-, NO2-, NH4+, SRP, DON, and DOP) and biotic (seaurchin density) factors and spatio-temporal variations in macroalgal structures analyzed by non-parametric multivariate model; 3. Factors affecting macroalgal abundance and structure: (1). Comparison of growth temperature ranges in different species to field temperature fluctuation; (2).Comparison of growth irradiance ranges in different species to field irradiance fluctuation; 4.Herbivore pressure: (1). Spatio-temporal variations of sea urchin abundance and structure of assemblage; (2). Gut contents and food preference of sea urchin experiment; (3). Herbivore exclusion experiment. Macroalgal %cover, biomass, species richness, diversity (H¡¦) and evenness (J¡¦) showed temporal and spatial variations, low values in January 2005 and also low values in the 5 m- and 10 m-depth areas of FFA1 and the 10 m-depth areas of FFA2. The data of k-dominance curve, hierarchical cluster and ANOSIM tests indicate that macroalgal assemblage is different between 4 sampling sites, between 2 depths and between 3 seasons. Ceratodictyon spongiosum is the most important species that separates September and January assemblages from April assemblage and separates the FFA1 and FFA2 assemblages from the FFA3 and NFFA assemblages. BVSTEP analysis shows that nutrients (NO3-, DON, DOP), temperature, monthly cumulative precipitation, and sea urchin density are the factors corresponding to variations of macroalgal assemblages, this correlation is more significant for 5 m-depth assemblage. Fish farming area FFA1and FFA2 assemblage are affect by sea urchin density, temperature and DON. Sea urchin influnces macroalgal abundance and assemblage structure in FFA1 and FFA2. Macroalgal %cover in 5 m-depth area shows a reversal relationship with sea urchin density; however, this relationship is not observed for 10 m-depth area. FFA1 and FFA2 are belong to high grazing pressure sites as indicated by high sea urchin density and exclusion experiment. Sea urchin gut contents and feeding preference test show that sea urchin has strong food selectivity with Hypnea charoides and Gracilaria coronopifolia as the most preferred species. Herbivore exclusion experiment shows that Hypnea charoides and Gracilaria coronopifolia are the species recruited in the cages. Ceratodictyon spongiosum had high biomass in FFA1 and FFA2 in January, which was ¡¥low DOP/high DON¡¦. The coindicence of temporal variations in FFA3 assemblage structure with a change from ¡¦Halimeda opuntia and Boodlea compostia¡¦ ¡÷ ¡¦Amphiroa fragilissima, Corallina phhulifera and Galaxaura oblongata¡¦ ¡÷¡¦Halimeda opuntia and Boodlea compostia¡¦ with low nitrogen/ high phosphorous¡¦ ¡÷¡¦ high nitrogen/ low phosphorous¡¦ ¡÷ ¡¦low nitrogen/ high phosphorous¡¦ suggest a role of ¡¦low nitrogen (NO3-)/high phosphorous (DOP)¡¦ for FFA3 structure modification. NFFA assemblage is controlled by temperature and monthly cumulative precipitation. Monthly cumulative precipitation in September was higher than January and April, in which Boodlea compostia and Gracilaria coronopifolia were dominant algae in September. The temperature growth responses of algae using the continuous-flow outdoor laboratory tank culture system fit their seasonal growth, reflecting the temperature-dependent manner of seasonal variations in abundance. It could be concluded from the present investigation that the structure of benthic macroalgal assemblage in Hsiao-Lu-Chiao island in southwestern Taiwan is affected by predicted natural and pulse disturbances. Temperature fluctuations involve in overall temporal variations in structure. Sea urchin herbivory and nutrient as pulse nutrient modulate the structure in fish farming area while monthly cumulative precipitation is associated with algal structure in non-fish farming area.