published_or_final_version / Civil Engineering / Doctoral / Doctor of Philosophy

published_or_final_version / abstract / Earth Sciences / Master / Master of Philosophy

published_or_final_version / Applied Geosciences / Master / Master of Science

The main objective of this thesis is to investigate the impact of microbial extracellular polymeric substances (EPS) on sediment stability and the related factors which influence “biogenic stabilisation” as a basis to the prediction of sediment erosion and transport. The ability to make direct and sensitive measurements of the physical properties of the biofilm is a critical demand to further understanding of the overall biostabilisation processes. Therefore, attention has been focused on developing a new technique, Magnetic Particle Induction (MagPI) for measuring the adhesive properties of the biofilm. MagPI determines the relative adhesive properties or “stickiness” of the test surface, whether a biofilm, a sediment or other submerged material. The technique may have future applications in physical, environmental and biomedical research. Newly developed Magnetic Particle Induction(MagPI) and traditional techniques Cohesive Strength Meter (CSM) for the determination of the adhesion/cohesion of the substratum were used to assess the biostabilisation capacity of aquatic microorganisms. Whilst these devices determine slightly different surface properties of the bed, they were found to complement each other, increasing the range of measurements that could be made and presented a strong correlation in the overlapping portion of the data. It is recognized that microorganisms inhabiting natural sediments significantly mediate the erosive response of the bed (“ecosystem engineers”) through the secretion of naturally adhesive organic material (EPS: extracellular polymeric substances). Interactions between main biofilm consortia microalgae, cyanobacteria and bacteria in terms of their individual contribution to the EPS pool and their relative functional contribution to substratum stabilisation were investigated. The overall stabilisation potential of the various assemblages was impressive, as compared to controls. The substratum stabilisation by estuarine microbial assemblages was due to the secreted EPS matrix, and both EPS quality (carbohydrates and proteins) and quantity (concentration) were important in determining stabilisation. Stabilisation was significantly higher for the bacterial assemblages than for axenic microalgal assemblages. The peak of engineering effect was significantly greater in the mixed assemblage as compared to the bacterial and axenic diatom culture. This work confirmed the important role of heterotrophic bacteria in “biostabilisation” and highlighted the interactions between autotrophic and heterotrophic biofilm components of the consortia. An additional approach, to investigate the impact of toxins on biostabilisation capacity of aquatic organism was performed on cultured bacterial and natural freshwater biofilm. The data suggest a different mode of triclosan (TCS) action ranging from suppressing metabolisms to bactericidal effects depending on the TCS concentration. The inhibitory effect of triclosanon bacterial and freshwater biofilms was confirmed. This information contributes to the conceptual understanding of the microbial sediment engineering that represents an important ecosystem function and service in aquatic habitats.

A Oceanografia, recentemente, vem fazendo uso dos mais diferentes radionuclídeos os quais funcionam como traçadores e auxiliam em uma maior compreensão dos processos de dinâmica oceânica, movimentação e deposição do fundo marinho. No Brasil, porém, há pouca informação a respeito dos teores de radionuclídeos naturais para a região costeira e oceânica e poucos são os estudos que utilizam esses radionuclídeos como ferramentas de compreensão de processos oceânicos. Neste contexto, este trabalho determinou atividades de 238U, 232Th e 40K por espectrometria gama e realizou análises granulométricas em amostras de sedimentos marinhos da Margem Continental Sudeste do Brasil. Os níveis variaram de 1,48 a 52,76 Bq kg-1 para o 238U, 10,63 a 49,45 Bq kg-1 para o 232Th e 65,45 a 873,28 Bq kg-1 para o 40K. Os resultados mostraram afinidade entre as frações finas do sedimento com 40K e 232Th. A razão 238U/232Th mostrou ser bom indicador de condições redox dos sedimentos. Verificou-se uma diferença nos níveis dos três radionuclídeos entre os setores ao norte e ao sul da Ilha de São Sebastião, com valores mais elevados ao sul. Estas diferenças foram relacionadas aos processos sedimentares dominantes em cada setor e aos agentes hidrodinâmicos responsáveis por tais processos. / Recently, Oceanography has been using a variety of radionuclides as tracers to understand ocean dynamic processes, handling and disposal of sediments in seabed. In Brazil, there is little information about the contents of natural radionuclides on the coast and deep ocean and few studies using radionuclides as tools to comprehend oceanic processes. In this context, this work determined grain size and activities of 238U, 232Th and 40K using gamma spectrometry in marine sediments from shelf and upper slope off Southeast Brazil. The levels ranged from 1,48 to 52,76 Bq kg-1 for 238U, from 10,63 to 49,45 Bq kg-1 for 232Th and, from 65,45 to 873,28 Bq kg-1 for 40K. 40K and 232Th showed good correlation with grain size (mud and clay content) and 238U/232Th ratios appeared to be good indicators of sediment redox conditions. There was a difference in levels of radionuclides between sectors northward and southward of São Sebastião Island, with higher values in south sector. These differences were related to differences in sedimentary processes in each sector and to the hydrodynamic agents responsible for these processes.

O sedimento marinho da Península Antártica representa uma área sensível a mudanças ambientais. No entanto, pouco se conhece sobre as comunidades microbianas que habitam esse ecossistema, incluindo a sua diversidade, distribuição e variações temporais. O objetivo foi determinar a estrutura das comunidades microbianas nos sedimentos marinhos da Baía do Almirantado, Ilha Rei George, Península Antártica. Sedimentos da Baía apresentam uma predominância dos Filos Proteobacteria, Firmicutes e Actinobacteria. Análise temporal revelou que comunidades microbianas em sedimentos próximos à estação Ferraz são mais estáveis quando comparadas aos sedimentos em áreas de menor atividade antrópica. No gradiente de profundidade foi observado que a estrutura de comunidade não mudou, indicando tolerância a variações de pressão hidrostática. Organismos heterotróficos dos gêneros Psychrobacter, Psychromonas e Loktanella foram os mais abundantes, sugerindo uma alta concentração de matéria orgânica disponível. O enriquecimento de culturas metanogênicas produziu até 1,70 mmol de CH4 após 120 dias de incubação. Este estudo sugere que as condições dos sedimentos favorecem organismos psicrofílicos de metabolismo heterotrófico. / Marine sediment of the Antarctic Peninsula is a susceptible area to environmental changes. However, little is known about the microbial communities inhabiting this ecosystem, including its diversity, distribution and variations over time. The aim of this study was to determine the structure of microbial communities present in marine sediments of Admiralty Bay, King George Island, on the Antarctic Peninsula. Sediments from Admiralty Bay shown a predominance of the Proteobacteria, Firmicutes, and Actinobacteria phyla. Temporal analysis revealed that microbial communities in sediment, near Ferraz station, are more stable compared to that in the sediments in areas of lower human activity. No variation on the community structure was observed in depth gradient, indicating tolerance to hydrostatic pressure variations. Heterotrophic organisms of the genera Psychrobacter, Psychromonas and Loktanella were the most abundant, suggesting a high concentration of organic matter in the sediment. Enrichment of methanogenic cultures enrichment yielded 1.70 mmol of CH4. This study suggests that conditions in sediments favoring metabolism of heterotrophic and psychrophilic organisms.

Regiões onde existem atividades portuárias estão mais susceptíveis à contaminação por hidrocarbonetos devido ao trânsito de embarcações e as operações de carga/descarga e, consequentemente, estão mais vulneráveis a sofrer impactos ambientais. Este trabalho avaliou a composição, distribuição e origem de hidrocarbonetos em oito regiões portuárias da costa sudeste brasileira: Santos-SP, São Sebastião-SP, Angra dos Reis-RJ, Itaguaí-RJ, Rio de Janeiro-RJ, Arraial do Cabo-RJ, Macaé-RJ e Vitória-ES. Foram coletadas amostras de sedimentos marinhos superficiais (02 cm) em duas campanhas (2009 e 2010). Para a análise dos hidrocarbonetos alifáticos e dos hidrocarbonetos policíclicos aromáticos (HPAs) foram utilizadas cromatografia em fase gasosa com detector de ionização de chama e cromatografia em fase gasosa acoplada à espectrometria de massas, respectivamente. As concentrações médias e os desvios-padrão do Total de nalcanos (μg g-1), Total de Alifáticos (μg g-1), HPAs Totais (ng g-1) e 16 HPAs prioritários (ng g-1) encontrados foram 6,55 4,52, 123,16 86,12, 1470,24 958,41 e 653,93 482,81 na região do porto de Santos-SP; 2,69 1,16, 35,29 15,22, 756,25 350,28 e 142,35 142,35 na região do porto de São Sebastião-SP; 3,11 2,34, 56,99 78,39, 777,62 821,32 e 82,33 84,62 na região do porto de Angra dos Reis-RJ; 5,58 3,28, 26,55 12,19, 1221,15 1070,87 e 92,28 93,14 na região do porto de Itaguaí-RJ; 5,09 2,03, 179,22 108,16, 3547,27 3081,18 e 1879,05 1792,69 na região do porto do Rio de Janeiro; 1,63 2,15, 51,54 39,50, 366,26 222,89 e 194,83 141,65 na região do porto de Arraial do Cabo-RJ; 3,92 2,69, 50,42 81,30, 643,97 637,61 e 182,46 265,87 na região do porto de Macaé-RJ; e 4,78 4,05, 45,31 32,84, 868,78 874,56 e 258,84 142,89 na região do porto de Vitória-ES, respectivamente. O nível de contaminação por hidrocarbonetos nas regiões estudadas variou de baixo a muito alto, mostrando que estes níveis não são diretamente compatíveis com o tamanho e o desenvolvimento urbano em torno de cada porto. Para a avaliação das fontes de contaminação foram usadas razões diagnósticas selecionadas da literatura. A mistura de fontes (pirolítica e petrogênica) foi considerada predominante na maioria das áreas, indicando a influência das atividades dos portos e dos aportes de entradas de contaminação por vias urbanas, industriais e atmosféricas. / Regions where there are port activities are more susceptible to contamination by hydrocarbons due to transit of vessels and loading/unloading operations and, consequently, are more vulnerable to environmental impacts. This study evaluated the composition, distribution, and origin of hydrocarbons in eight ports in Southeastern Brazilian coast: Santos-SP, São Sebastião-SP, Angra dos Reis-RJ, Itaguaí-RJ, Rio de Janeiro-RJ, Arraial do Cabo-RJ, Macaé-RJ and Vitória-ES. Samples were collected from shallow marine sediments (0-2) in two years (2009 and 2010). Gas chromatography with flame ionization detector and gas chromatography coupled to mass espectrometria were respectively used to analyze the aliphatic hydrocarbons and polycyclic aromatic hydrocarbons (HPAs) Average concentration and standard deviations of n-alkanes (μg g-1), Total Aliphatic (μg g-1), 16 priority HPAs (ng g-1) and Total HPAs (ng g-1) were 6.55 4.52, 123.16 86.12, 1470.24 958.41 and 653.93 482.81 in the region of Santos; 2.69 1.16, 35.29 15.22, 756.25 350.28 and 142.35 142.35 in the region São Sebastião; 3,11 2,34, 56,99 78,39, 777,62 821,32 and 82,33 84,62 in the region of Angra dos Reis; 5,58 3,28, 26,55 12,19, 1221,15 1070,87 and 92,28 93,14 in the region of Itaguaí; 5,09 2,03, 179,22 108,16, 3547,27 3081,18 and 1879,05 1792,69 in the region of Rio de Janeiro; 1.63 2.15, 51.54 39.50, 366.26 222.89 and 194.83 141.65 in the region of Arraial do Cabo; 3.92 2.69, 50.42 81.30, 643.97 637.61 and 182.46 265.87 in the region of Macae; and 4,78 4,05, 45,31 32,84, 868,78 874,56 and 258,84 142,89 in the region of Vitória, respectively. Contamination by oil in those studied regions was variable and could not be straightly related to the size and urban development around each port. In order to evaluate sources of contamination it were used selected diagnostic reasons. Contamination in most of areas revealed to be simultaneously influenced by a mix of sources (pyrolytic and petrogenic), probably related to port activities, urban and industrial wastes, and atmospheric routes.

Late Holocene climate variability includes the Little Ice Age (LIA, 450-150 BP) and the Medieval Warm Period (MWP, 1100-700 BP) that are characterized by contrasting hydrologic and thermal regimes. The degree of interaction between the North American continent and the ocean during these two abrupt climate events is not well known. Marine sedimentary records from basins proximal to major rivers integrate climate signals across large spatial scales and can provide a coherent, high-resolution assessment of the oceanic and continental responses to changing climate and hydrologic conditions. The Pigmy Basin in the northern Gulf of Mexico is ideally situated to record inputs from the Mississippi River and to relate these inputs to changing hydrologic conditions over North America during the LIA and MWP. Hydrologic variability recorded over the North America continent is directly dependent on the moisture balance (E/P) over the sub-tropical Gulf of Mexico (a major source of moisture to the North America continent). Warm, moist air masses from the south interact with cold/dry air masses from the north over the North American continent to produce storm fronts. Increased evaporation over the Gulf of Mexico leads to enhanced precipitation over the North American continent, due to the intensification of atmospheric circulation, which influences meridional moisture flux from the Gulf of Mexico to the North American continent. This study focuses on the sedimentary record spanning the last 1400 years and utilizes a multi-proxy approach incorporating organic and inorganic geochemical analyses to define intervals of varying continental inputs and to assess changes in the moisture balance (E-P) within the Gulf of Mexico.

"March 2002" Includes bibliographical references (leaves 145-161) An analogue for shallow marine carbonate sedimentation and deposition on a broad passive margin is described from the eastern Great Australian Bight.

"March 2002" / Includes bibliographical references (leaves 145-161) / xvii, 198 leaves : ill. (some col.), maps (some col.), plates ; 30 cm. / Title page, contents and abstract only. The complete thesis in print form is available from the University Library. / An analogue for shallow marine carbonate sedimentation and deposition on a broad passive margin is described from the eastern Great Australian Bight. / Thesis (Ph.D.)--University of Adelaide, Dept. of Geology and Geophysics, 2002