Dans le cadre du développement de nouveaux procédés par extraction liquide-liquide pour le recyclage du combustible nucléaire usé, de nouvelles molécules extractantes sont à l’étude. Les molécules à fonction amide (monoamide, malonamide ou diglycolamide) sont particulièrement étudiées. Les objectifs de cette thèse sont d’étudier la spéciation moléculaire et supramoléculaire de solutions organiques représentatives des différents procédés en cours de développement. Cette spéciation a été réalisée en couplant des études expérimentales et théoriques. Après extraction de solutés, la composition des solutions organiques est déterminée expérimentalement. Des boites de simulation par dynamique moléculaire ayant la même composition que les solutions expérimentales sont ensuite construites. Après simulation, les trajectoires de dynamique moléculaire permettent de calculer les masses volumiques et les intensités diffusées aux petits angles théoriques des solutions simulées. Dès lors que les données calculées et les données expérimentales sont en accord, on estime que les simulations sont représentatives des solutions réelles. Ces simulations couplées à des caractérisations expérimentales supplémentaires (spectroscopie infra-rouge – IR – et spectrométrie de masse à ionisation par électrospray – ESI-MS –) permettent de décrire les structures en solution à la fois à l’échelle moléculaire et supramoléculaire. Cette méthodologie a été appliquée à l’extraction d’eau et de nitrate d’uranyle par les monoamides DEHBA et par le malonamide DMDOHEMA ainsi qu’à l’extraction d’eau et de nitrate de néodyme par des solutions à base de TODGA.L’extraction d’eau en phase organique est dépendante de l’organisation de la solution : les solutions de monoamides essentiellement constituées de monomères et dimères solubilisent peu d’eau contrairement aux solutions de DMDOHEMA ou de TODGA majoritairement constituées d’agrégats. L’extraction de nitrate d’uranyle a mis en évidence différents comportements dépendant de la structure de la molécule ou de la concentration d’uranyle. Des complexes UO2(NO3)2L2 sont observés à faible concentration d’uranium après extraction par les monoamides. Lorsque la concentration d’uranium augmente, des espèces polymétalliques sont observées et deviennent majoritaire en solution. Dans le cas du DMDOHEMA, des complexes monométalliques sont majoritaires mais n’ont pas une stœchiométrie unique. L’uranyle peut être coordiné à 1 ou 2 malonamides (monodenté ou bidenté), 2 nitrates et parfois une molécule d’eau. Le néodyme est extrait par le TODGA dans l’heptane sous forme de petits agrégats contenant 2 ou 3 cations liés par des nitrates pontants. Une augmentation de la concentration de néodyme entraine une augmentation de l’agrégation jusqu’à l’apparition d’une démixtion de phase. La présence d’octanol (0,3 mol/L) permet d’extraire une plus forte concentration de Nd sans séparation de phase. Les simulations ont montré que l’octanol se place dans la 1ère sphère de coordination du néodyme à la place des molécules d’eau ou de TODGA améliorant ainsi la solubilité des complexes et agrégats dans la phase organique. L’ajout de 0,5 mol/L de DMDOHEMA à une solution de TODGA permet également d’éviter la démixtion en structurant la solution. En présence de malonamide des agrégats plus petits sont observés.Pour les deux systèmes étudiés (mono et diamides), les phases obtenues après démixtion de la phase organique (phénomène de formation de 3ème phase) ont également été caractérisées.Ces travaux ont permis de déterminer l’organisation moléculaire et supramoléculaire dans des solutions d’extraction par l’utilisation d’une méthode couplant études expérimentales et simulations par dynamique moléculaire. / In the framework of development of new processes for spent nuclear fuel reprocessing, new extractant molecules are studied.The goals of this thesis are to study the molecular and supramolecular speciation of representative organic solutions. The speciation was determined by coupling experimental and theoretical study. After solute extraction, the composition of the organic solutions is experimentally determined. Simulations boxes with the same composition than experimental solutions are build. After simulation, trajectories are used to calculate small angle scattered intensities. The representativeness of the simulations is checked by comparison of experimental and calculated scattered intensities. The use of the simulation, ESI-MS spectrometry and IR spectroscopy provides the description of the structures in organic solution at the molecular and supramolecular scale. This methodology was applied on water and uranyl nitrate extraction by the monoamide DEHBA and MOEHA and by the malonamide DMDOHEMA as well as the extraction of water and neodymium nitrate by TODGA solutions.The extraction of water is dependent of the organization of the solution: monoamide solution made of monomer and dimer solubilize few amount of water in comparison with DMDOHEMA or TODGA solutions.The extraction of uranyl nitrate showed different behavior. UO2(NO3)2L2 complexes are observed at low uranium concentration after extraction by the monoamides. Polymetallic species are observed with the increase of uranium concentration. In the case of DMDOHEMA, monometallic complexes are majority but without a unique stoichiometry. The uranyl can be linked to 1 o 2 malonamides, 2 nitrates and sometimes to a water molecule. Neodymium is extracted by TODGA within small aggregates made of 2 or 3 cations liked by bridging nitrates. The increase of the concentration of neodymium leads to a phase separation. The presence of octanol provides the extraction of higher concentration of neodymium nitrate. Simulations showed the replacement of water and TODGA molecules and the first coordination sphere of the cation with octanol molecule. This increases the solubility of the aggregates. The presence of DMDOHEMA prevents also the phase separation by structuring the solution. With malonamide, smaller aggregates are observed.For both systems, phases after demixing (third phase formation) were characterized.This work provides the study of the molecular and supramolecular organization of organic solutions by combining experimental studies and molecular dynamic simulations.

Le Nafion dans la couche catalytique des PEMFCs peut former un revêtement de film ultra-mince enrobant la surface du catalyseur et ses supports. La morphologie du Nafion se révèle être très sensibles à la nature du matériau sur lequel le film est déposé, et en particulier le caractère hydrophobe/phile de ces matériaux. Notre travail consiste à effectuer une enquête complète sur les effets hydrophiles du substrat sur les propriétés physiques du film ultra-mince de Nafion à des niveaux différents d'hydratation. Par conséquent, nous étudions selon un cadre unique une variété d'environnements spécifiques de la couche du catalyseur de la PEMFC, pouvant aller d'un substrat hydrophobe (carbone) à hydrophile (platine). La méthode numérique choisie pour ce travail est une simulation par Dynamique Moléculaire classique. Les configurations de films ultra-minces correctement thermalisés ont été décrites en détail en fonction de leurs propriétés structurales et dynamiques. / Nafion inside Polymer Electrolyte Membrane Fuel Cells (PEMFC) catalyst layers can be found as an ultra-thin film coating the catalyst and the catalyst support surfaces. Nafion morphology shows to be strongly sensitive to the type of material where the film is deposited, especially the hydrophobic/philic character of these materials. Our work consists in performing a complete investigation of the substrate hydrophilicity effects on the physical properties of Nafion ultra-thin film at different hydration levels. We investigate in a unique framework a variety of environments peculiar of the PEMFC catalyst layer, ranging from hydrophobic (carbon) to hydrophilic (platinum) substrates. The numerical method chosen for this work is classical Molecular Dynamics simulations. The well-thermalized thin-film configurations were described in details in terms of their structural and dynamical properties.

Orientador: Eloi da Silva Feitosa / Banca: Leo Degreve / Banca: Luiz Carlos Gomide Freitas / Banca: José Roberto Ruggiero / Banca: Marinômio Lopes Cornélio / Resumo: O Poli(etileno glicol) (PEG) é um polímero sintético cujas características tem despertado grande interesse em diversas áreas. Suas aplicações podem ser vistas nas mais variadas áreas, desde biotecnologia e medicina até aplicações industriais e cosméticos. Alguns aspectos físicos como a estrutura adotada por esse polímero em diferentes solventes e detalhes sobre a interação entre essas moléculas ainda necessitam de maiores esclarecimentos, o que o torna objeto de intensa investigação. Essa tese visa desenvolver um modelo para moléculas de PEG, que possa ser utilizado em experimentos de dinâmica molecular. Resultados de simulações com esse modelo foram comparados a dados experimentais presentes na literatura, de forma a verificar o comportamento do modelo em diferentes condições, avaliando assim sua adequação. Os valores de densidade, obtidos dos sistemas simulados, apresentaram erro máximo de 1,14% para concentrações de até 50% de PEG400. A densidade do sistema em função da temperatura concorda com os dados da literatura, mantendo um erro fixo de 0,35%, que está relacionado com a concentração de 50% utilizada nessa simulação. A estrutura helicoidal, apresentada pelas moléculas de PEG ao final do processo de preparação dos modelos, é perdida rapidamente em todas as diferentes condições em que o sistema foi simulado, indicando que tal estrutura é energeticamente desfavorável em água. Com o aumento da concentração de PEG, as seguintes estruturas foram encontradas: moléculas de PEG livres em solução em concentrações inferiores a 5%, aglomerados de PEG entre 5 e 50%, com uma transição gradual entre uma estrutura e outra. Os resultados obtidos para concentrações acima de 50% não são conclusivos. Seguindo o procedimento aplicado ao modelo inicial, de PEG400, foi desenvolvido ...(Resumo completo, clicar acesso eletrônico abaixo) / Abstract: Poly(ethylene glycol) (PEG) is a synthetic polymer whose characteristics have attracted great interest in different fields. It has been applied in very different areas, from biotechnology and medicine to industry and cosmetics. Physical aspects like the structure PEG assumes in different solvent and details on the interaction between these polymers still lack clarity, make PEG an object of intense investigation. This Thesis aims do develop a model for PEG molecules that can be used in molecular dynamic simulations. Results of simulations using this model were compared to published experimental data, in order to investigate the behavior of the model under different conditions to evaluate its validity. The density values obtained from the simulations exhibit a maximum error of 1.14% for PEG400 concentrations up to 50%. The system density as a function of temperature agrees with experimental data from the literature within an error of 0.35% for the 50% PEG in the simulation. The helicoidal structure assumed by the PEG molecules at the end of the procedure of the model preparation is quickly lost under every simulation condition, thus indicating that the helicoidal structure is not energetically favorable for PEG in water. As PEG concentration is increased, the following structures were found: free PEG molecules below ca 5%, PEG clusters from ca 5-50%, with a gradual transition from one structure to another. The results for concentrations higher than 50% are not conclusive. Following the procedure applied to the initial PEG400 model, a second model was developed, almost four times larger, and used to investigate possible molecular effects capable to induce phase thermoseparation. The transition from different system states took place on average temperatures between 423.3 K and 424.1 K at the average pressure of 8.98 Bar. / Doutor

Apresentamos uma série de estudos, baseados em simulações de Dinâmica Molecular no vácuo e em solução, sobre o processo de complexação das supramoléculas tetraethylester p-tert-butyl calix[4]arene (CLE) e tetramethylketone p-tert-butyl calix[4]arene (CLC) com os íons Pb2+ e Cd2+ e espécies neutras. Os modelos para as moléculas de calixareno e do solvente foram baseados no campo de forças OPLS-AA. Os parâmetros para os íons foram desenvolvidos a partir de uma metodologia de ajuste de valores de modo a reproduzirem simultaneamente propriedades termodinâmicas e estruturais obtidas experimentalmente ou por cálculos de QM/MM. As simulações no estado líquido nos mostraram que o CLE aprisiona os íons de maneira mais eficiente que o CLC, formando complexos mais estáveis. A complexação do íon desencadeia um efeito alostérico em ambos os calixarenos estudados, permitindo a complexação de uma molécula de acetonitrila na cavidade hidrofóbica estabilizando o complexo. Nas simulações com o CLC observamos que a complexação da acetonitrila é necessária para manter o íon ligado à cavidade hidrofílica, evidenciando a dependência desses complexos com esse solvente em específico. Apesar de observarmos que o CLE apresenta maior afinidade com os íons Pb2+ e Cd2+ que o CLC, somente futuras simulações utilizando a água como solvente poderão confirmar a viabilidade do uso desta molécula em sistemas destinados à despoluição ambiental. / We report a series of Molecular Dynamics simulations, in vacuum and in acetonitrile solution, on the complexation process of the calixarens tetraethylester p-tert-butyl calix[4]arene (CLE) and tetramethylketone p-tert-butyl calix[4]arene (CLC) with Pb2+ and Cd2+ anions and neutral species. The solvent and calixarene molecules were modeled based on the OPLS-AA force field. The parameters for the ions were adjusted to simultaneously reproduce some structural and thermodynamic properties obtained either experimentally or from QM/MM calculations. The simulations in the liquid phase show CLE to be more efficient than CLC in trapping the studied metal ions, leading to more stable complexes. Ion complexation gives rise to an allosteric effect by which a solvent molecule is trapped in the hydrophobic cavity giving rise to further stabilization of the complex. Simulations on CLC show that formation of the calixarene-acetonitrile adduct is essential to the stabilization of the ionic complex, thus exhibiting the influence of this particular solvent in the very existence of the complex. In spite of the conclusion that CLE has higher affinity than CLC for Pb2+ and Cd2+ ions, only further studies in water solution will permit to evaluate the real potential of this molecule as an efficient scavenger of environmental heavy metal pollution.

This dissertation presents a numerical study using molecular dynamic simulations that interrogates the polymer structure as it is strained continuously in time and correlates it with the stress developed in it. We investigate the role of external control variables such as temperature, strain-rate, chain length, and density. At temperatures higher than glass transition, stress anisotropy is reduced even though bond stretch is greater at higher temperatures. There is a significant increase in stress level with increasing density. At faster rates of loading stress anisotropy increases. Deformation is mostly due to bond stretch and bond bending rather than overall shape and size. Stress levels increase with longer chain length. Cross-linkers beyond a critical value of functionality cause increased constraint on the motion of monomers and uniaxial stress developed increases. Stacking of chains also plays a dominant role in terms of excluded volume interactions. Low density, high temperature, low values of functionality of cross-linkers, and short chain length, facilitate chain uncoiling and chain slipping in crosslinked polymers. Uniaxial stress in linear polymers, on the other hand, is only mildly in uenced by temperature. Sinusoidal strain loading clearly reveals the viscoelastic nature of polymers. Internal structural parameters of the chains such as bond length, bond angle show hysteresis during loading and unloading. However, parameters representing overall size and shape of chains do not display any hysteresis. Small size magnetic particles and their small volume fractions in polymers show no signi cant e ect of applied external magnetic eld on anisotropic stress. Stress increases with lowering temperature, increasing density, decreasing volume fraction of magnetic particles, and increasing chain length

Mon travail au sein de l'équipe Chimie du Solide et Matériaux (CSM) à l'Institut des Sciences Chimiques de Rennes a porté sur la synthèse et la caractérisation de nouveaux composés hybrides à clusters, en particulier des clustomésogènes. Depuis leur publication en 2010, les clustomésogènes représentent une nouvelle famille de cristaux liquides, combinant les propriétés physiques des clusters, en particulier la luminescence, avec les propriétés de mise en forme et d'organisation des cristaux liquides. La première partie de ce manuscrit est consacrée à la synthèse, aux études de luminescence, d'oxydo-réduction et aux calculs DFT d'un nouveau composé à clusters, K4[Re6Sei8(N3)a6]·4H2O, précurseur de briques moléculaires pour l'élaboration de nanomatériaux hybrides. La deuxième partie porte sur la synthèse et l'étude de trois clustomésogènes (CL3, CL6 et CL9) présentant différentes densités en unités mésogéniques grâce à la modulation d'un espaceur entre le coeur inorganique et l'unité mésogénique. LC3, LC6 et LC9 possèdent respectivement une chaine aliphatique de 3, 6 et 9 carbones entre le cluster et les unités mésogéniques de type cyanobiphényls. Finalement, une prospective de simulation par dynamique moléculaire a été menée dans le but de comprendre les interactions entre ces macromolécules cristal-liquides, les clustomésogènes, afin de comprendre et prévoir les processus d'auto-assemblage de ces composés hybrides. Ce travail est une première étape pour le développement futur de clustomésogènes de structures contrôlées pour des applications dans les domaines de l'affichage et de l'éclairage. / My work took place in the material and solid chemistry team (CSM) from the institute of chemical Sciences of Rennes. It dealt with the synthesis and characterisation of new hybrid compounds : the clustomesogens, which generate luminescent properties assigned to the cluster and self-organisation from liquid-crystal material. The first chapter describes the state of art of the cluster chemistry and the basic knowledge to understand liquid-crystal and in particular clustomesogen material. The second chapter describes the synthesis, characterisation, luminescence and redox analysis and finally DFT calculations of a new inorganic cluster compound K4[Re6Sei8(N3)a6]·4H2O, precursor of molecular building block for the development of hybrid materials. The third chapter deals with the synthesis and study of three specific clustomesogens. Differing by the density in mesogenic units around the cluster core, the compound LC3, LC6 and LC9 have respectively an aliphatic chain of 3, 6 and 9 carbons between the cluster and the mesogenic cyanobiphenyl units. The fourth chapter presents a prospective of molecular dynamic simulations in order to understand the interaction between the clustomesogen supermolecular systems and anticipate the selfarrangement processes. This work is a first step for the future development of new and specific building blocks based on clustomesogens for applications in the field of display or lighting.

Au cours d’un traitement de surface de type dépôt assisté par plasma, les caractéristiques et propriétés de l’interface entre le dépôt et le substrat sont déterminées par la première couche atomique du dépôt, voire les premiers atomes qui commencent à recouvrir la surface du substrat. Aussi, la parfaite connaissance du comportement des particules incidentes et du réarrangement des atomes suite à l’impact d’une particule du plasma est-elle un élément essentiel à la description du comportement de la surface en cours de traitement et donc de ses propriétés ultérieures. Au cours de cette thèse, nous avons entrepris d’étudier, par une approche combinant expériences et simulation numérique par dynamique moléculaire, l’interaction d’espèces (C, Ti, W) avec une surface de silicium en fonction de paramètres tels que l’énergie, la fluence ou encore l’incidence des particules arrivant sur la surface. Une part importante de ce travail a consisté à adapter les codes de dynamique moléculaire (utilisation des champs de force réactifs) aux systèmes étudiés. La partie expérimentale a nécessité la mise en place de procédures spécifiques pour l’utilisation de l’équipement Storing Matter. Les résultats montrent que, quelles que soient l’espèce incidente, parmi celles étudiées, le coefficient de collage (SC) est dans la gamme [0.7 – 1] ; dans le cas de W, quasiment tous les atomes incidents restent sur la surface (SC~~1). Outre la détermination du coefficient de collage, pour différentes conditions initiales des espèces incidentes (énergie, incidence, fluence) les modifications apportées à la surface ont également été déterminées en termes d’implantation et de trajectoire dans le matériau des espèces incidentes, et de pulvérisation de la surface du substrat / During plasma assisted deposition, properties of the coating substrate interface depend on the first atomic layer of the deposit, or the atoms that first start to cover the surface. Therefore the good knowledge of the sticking coefficient and the reorganization of the surface following particle impact is an essential issue to achieve the description of the behavior of the processed surface and, therefore, its expected properties. Consequently, we investigated the interaction between incoming particles (C, Ti, W) and a silicon surface by using an approach combining molecular dynamic simulations and experiments. Various initial conditions were studied, energy, fluence and incidence angle of the incoming particles. An important part of this work has consisted in adapting the molecular dynamic codes (using reactive force fields) to the investigated systems. Meanwhile, experimental procedure specifically devoted to the use of the Storing Matter facility was also developed. Results show that the sticking coefficient (SC) value is in the range [0.7 – 1] irrespectively of the incoming species; in the case of W, almost all atoms stick on the surface (SC~~1). Besides the determination of sticking coefficient, the surface modification resulting from the particles impingement were determined for various initial conditions (energy, fluence, angle) in terms of implantation and displacement of the incoming species, and surface sputtering as well

No description available.

Microbial cell disruption using pressurized gas is a promising approach to improve the lipid extraction yield directly from the wet biomass by eliminating the energy-intensive drying process, which is an integral part of traditional methods. As the process starts with the solubilization of the gas in lipid-rich microbial cells, it is important to understand the solubility of different potential gases in both lipid (triglyceride) and lipid-rich microbial cell culture to design efficient cell disruption processes. In this study, we determined the solubility of different gases (e.g., CO2, CH4, N2, and Ar) in canola oil (triglyceride) using a pressure drop gas apparatus developed in our laboratory. The solubility of different gases in triglyceride followed the trend CO2 > CH4 > Ar > N2. Since the solubility of CO2 was found to be higher compared to other gases, the solubility of CO2 in lipid rich cell culture, cell culture media, and spent media was also determined. It was found that CO2 is more soluble in triglycerides, but less soluble in lipid-rich cell culture compared to CO2 in water. From both thermodynamic models and Monte Carlo simulations, the correlated solubility was found to be in good agreement with the experimental results. CO2 was found to be the most suitable gas for microbial cell disruption because almost 100% cell death occurred when using CO2 whereas more than 85% cells were found to be active after treatment with CH4, N2, and Ar. The optimization of microbial cell disruption was conducted using the combination of Box-Behnken design of experiment (DOE) technique and response surface methodology. The optimized cell disruption conditions were found to be 3900 kPa, 296.5 K, 360 min, and 325 rpm where almost 100% cell death was predicted from the statistical modeling. Finally, it was found that 86% of the total lipid content can be recovered from the wet biomass after treatment with pressurized CO2 under optimized conditions compared to control where up to 74% of the total lipid content can be recovered resulting in 12% increase in the lipid extraction yield using pressurized CO2.

<p>Metallic materials with nanotwins have been extensively studied for the past twenty years due to their excellent mechanical properties including high strength, great ductility and good thermal stability. Twin boundaries (TBs) can inhibit dislocation migration to increase strength and renucleate new dislocations to accommodate plasticity. However, the roles of stacking faults (SFs), another important planar defect, on the deformation mechanisms in face-centered cubic (FCC) and hexagonal close-packed (HCP) metals are less well understood. The focus of this research is to identify the effect of SFs on deformation mechanisms in FCC and HCP Co thin films and investigate the collaborated strengthening effect between SFs, TBs and layer interfaces in Cu/Co multilayer systems. We utilized in situ micropillar compression tests to investigate the mechanical behaviors of FCC Co with inclined SFs, HCP Co with parallel SFs and Cu/Co multilayers with defect networks, which consisting of SFs, TBs and layer interfaces. Post deformation transmission electron microscopy analyses and molecular dynamic simulations revealed that SFs can strengthen the materials by impeding partial dislocation migration and accommodate plastic deformation by defaulting process and/or intriguing phase transformation. Furthermore, the interplay between TBs, SFs and layer interfaces provides high strength and good deformability in Cu/Co nanolaminates. This research shows an in-depth investigation on deformation mechanisms of nanostructured metals with high-density SFs and provides a new perspective for the design of metallic materials with high strength and great ductility.</p>