Thesis (Ph. D.)--University of California, Davis and San Diego State University, 2003. / Includes bibliographical references (leaves 142-144). Also available via the World Wide Web. (Restricted to UC campuses).

In this study, we have demonstrated that inoculation of bean seeds with non-pathogenic binucleate Rhizoctonia (np-BNR) at sowing protected bean seedlings from infection of R. solani. Using quantitative real-time RT-PCR (QRT-PCR), transcript levels of defense genes encoding 1,3-beta-glucanase (GLUC), phenylalanine ammonia-lyase (PAL), chalcone synthase (CHS) in one-week old bean seedlings was monitored during np-BNR and R. solani interaction. The results revealed that protection effect of np-BNR correspond to a systemic suppression of these three defense genes' expression from significant higher level elicited by R. solani to the level of non-infected plants. This indicates that bio-protection by np-BNR isolates is not correlated to activation of these three defense genes' expression. Similar suppression was achieved for pre-colonization of bean seedlings with arbuscular mycorrhizal (AM) Glomus introradices on GLUC gene expression, although the AM fungus did not significantly reduce rot symptoms. Possible mechanisms implicated in down-regulation during plant-pathogen and np-BNR or AM interaction are discussed.

Copper hydroxide-treated surfaces are commonly used to control roots in horticultural production systems, although the particulars of Cu movement from the treated surface are largely unknown. The rate and temporal pattern of Cu mobility from in-ground Cu-treated growing baskets, and the fate of this Cu, was studied. In a field experiment involving Acer platanoides, an alternative Cu formulation consisting of Cu metal powder was determined to move slightly more slowly from the basket fabric than Cu(OH)2 over the first season while providing adequate root control. Addition of Glomus intraradices inoculum to the basket system increased the mobility of Cu metal and had no effect on Cu(OH) 2. This suggests that VAM fungi can actively solubilize Cu metal. These results also confirm that the chemistry of the Cu, possibly in addition to the chemistry of the resin, determines Cu movement from the treated surface. The fate of Cu from in-ground baskets planted with Acer jinnala was elucidated in a second field experiment. After one field season, the majority of Cu initially on the basket fabric had been deposited in the soil both in- and outside the basket. While Cu recovered in leachate represented only a tiny fraction of basket Cu, the concentration of Cu in leachate exceeded acceptable limits in the majority of samples. This indicates that the use of Cu(OH) 2-treated baskets in the field may have a negative impact on groundwater quality.

Nod factors, lipo-chitooligosaccharides (LCOs), are rhizobial signal molecules important in the establishment of nodule formation, leading to atmospheric dinitrogen fixation in legume-rhizobium symbioses. Recently, LCOs were also found to regulate other plant processes. We demonstrated that, at 10 -6 M, four LCOs produced by Bradyrhizobium japonicum enhanced soybean seed germination. Evaluation of G-protein inhibitors showed that U-73122, a phospholipase C inhibitor, also increased soybean seed germination, similar to the increase by LCO NodBj-V(C18:1 MeFuc), indicating different mechanisms for the plant perception to LCOs for nodule initiation and seed germination. This was confirmed as LCOs were not able to break dormancy of skotodormant lettuce seeds. Soybean early seedling growth was also increased by the application of LCOs. Pulse 14Ca2+ experimentation showed that the increase might also be related to an increase in Ca 2+ uptake by shoots. We confirmed this with both genistein-induced and non-induced B. japonicum 532C; however, strain 168 (a mutant unable to produce LCO) and non-host rhizobia (Rhizobium leguminosarum, Sinorhizobium meliloti), did not increase Ca2+ uptake. Addition of 1.6 g L-1 casein hydrolysate in yeast extract mannitol broth drastically increased bacterial growth and increased volume-basis LCO production, but decreased LCO production per cell. Best conditions for sterilizing and storing LCOs were determined. LCO should be sterilized by using polyestersulfone filter or autoclaving for up to 30 minutes. LCO was degraded faster when stored at room temperatures (23 +/- 2°C) than low temperature (4 +/- 1°C) and can be stored more than one year.

Both lettuce and pepper crops are routinely grown as transplants in Quebec. Previous research has shown that both of these plants respond well to endomycorrhizae with a resulting improvement in plant growth and yield. Although many studies have been conducted on endomycorrhizal inoculation of transplants most were looking at the end result, i.e. yields, and did not focus on changes occurring at the transplant stage. This series of experiments was conducted to look at the effect of inoculation at the transplant stage. Lettuce (Lactuca sativa cv. Parris Island Cos) and pepper (Capsicum annuum cv. Hybrid Bell Boy) were inoculated with Glomus intraradix Schenck & Smith and Glomus versiforme (Karst.) Berch. Experiments involved testing the effect of different growing media, different container volumes and different light sources on the growth of endomycorrhizal lettuce and pepper transplants. In all experiments the amount of growth enhancement due to endomycorrhizal inoculation was low or negligible. Colonization rates were generally low, probably due to low light levels. Transplants grown in larger volume containers were generally larger than those grown in smaller containers. The transplants grown in the soil and compost based media were larger than those transplants grown in the artificial media. Growth of lettuce and pepper transplants was affected differently depending on the light source used. Some interactions between the light source and the endomycorrhizal treatments was observed.

The main project was an assessment of the effect that colonization by five different Vesicular-arbuscular mycorrhiza (VAM) cultures have on the growth of the indigenous-grasses Themeda triandra and Trachypogon spicatus, when grown on coalmine topsoil. With unamended topsoil, VAM showed the ability to significantly increase the growth of the grasses compared to non-VAM control plants. The amount of effect varied with the VAM inoculum culture type, with a VAM culture originally from the Cape Flats being the most effective. In a second trial, soil fertilized with nitrogen, potassium and low concentrations of phosphate (P) was used. Again VAM displayed the ability to improve grass plant growth. The increase in P caused the Large spore inoculum to become the most effective. This indicated that different VAM cultures are inhibited to different degrees by an increase in phosphate fertilization. The low level of VAM infection, in both trials, seemed to preclude most of the VAM associated nutrient uptake control. Varying reports have been published on the effect of fertilization on VAM infection and colonization. In an attempt to further elucidate the role of fertilizer in VAM inhibition, rhizosphere soil from a long term fertility trial near Witbank, S.A. was sampled. Amcoal environmental services fertilized forty-two plots with varying concentrations of nitrogen, potassium, phosphate and lime to assess the growth of a variety of grasses. The trial had been maintained for ten years before sampling was completed for this project. Samples from each plot were taken from the rhizosphere soil of the most prominent grass (Digitaria eriantha). VAM spores were extracted from all the samples and five different types of spores were identified and counted for each sample. By comparing spore counts from each plot, the effect that the fertilizer regime had on the VAM on that plot could be assessed. Variation in the concentrations of nitrogen (N) and potassium had no significant effect on VAM colonization. Very low concentrations of N could not be assessed as all plots had been initially top dressed with nitrogen fertilizer. Phosphate (P) fertilizer concentration had a marked effect on spore concentrations. There was a significant increase in spore concentration as P levels were increased from zero P fertilization to 80kgs P/ha. Further increase in P to ≥ 60kgs P/ha resulted in a significant decrease in spore concentrations. From this it would appear that a low level of soil P is needed to give maximum VAM colonization and further increase in soil P causes VAM inhibition. Lime ameliorated the VAM inhibition caused by high concentrations of P. Increase in P caused spore concentrations of low abundance propagules (LAP) too decreased more rapidly than high abundance propagules (HAP). In high P soils VAM with LAP would eventually be eliminated from the system resulting in a decrease in VAM diversity. A project was attempted to use the recently developed Randomly Amplified Polymorphic DNA in conjunction with the Polymerase Chain Reaction (RAPD PCR) techniques to identify different VAM families. The technique causes the amplification of segments of DNA which can be visualized by gel electrophoresis and staining. Band patterns formed can be related to the VAM of origin and hence used in identification of that VAM. An attempt was made to amplify DNA from a single spore in this manner which would, in conjunction with morphological observations, make identification of VAM easier and more accurate. Problems with either releasing the DNA from the spores, or substances in the spore inhibiting the PCR reaction made obtaining band patterns difficult. After many PCR attempts, varying extraction methods and PCR conditions, no repeatable results could be obtained and work on this project was discontinued. / Thesis (M.Sc.)-University of Natal, Pietermaritzburg, 1997.

Cereal crops such as maize and sorghum are economically important in South Africa (SA) as a staple food diet. In order to meet the needs of South Africa’s growing population, higher yields in crop production need to be attained. However, the two major stress factors that affect yield production and require primary attention are nutrient deficiencies and pest infestations. Research is now being focused on certain endophytes that have become a valuable tool for agriculture as they protect crops against the above-mentioned stresses. The endophyte focused on in this study was Arbuscular Mycorrhizal fungi (AMF). This research was aimed at developing an in vitro culture system for SA cereal crops to enable interaction studies of endophytes. This dissertation is divided into two parts; the first part focused on the development of an in vitro culture system, the assessment of sorghum plant growth and exudate production in the presence of the Glomus intraradices strain. The results indicated that sorghum produces the required root exudates in the second stage of growth. Using high pressure liquid chromatography with mass spectrometry (HPLC/MS), it was noted that sorghum produced phytochemicals as chemoattractants for the respective endophytes. However, it was documented that when the plant underwent certain stresses they produced exudates, which acted as phytotoxic compounds that destroyed symbiotic organisms around sorghum rhizophere. The second part focused on optimization of the surface sterilization of maize seeds. The results indicated that maize contained unidentified endophytes, which negatively affected plant development. Surface sterilization of maize seeds was accomplished. The successful in vitro development can be used for future use to study plant development. Understanding plant development and interaction with symbiotic endophytes would not only be of great benefit but would also make it easier to create a biocontrol agent in vitro, which would bring about high crop yields at cost-effective prices and would be less labour intensive. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2010.

A time course study was conducted to monitor disease development and expression of the defense-related genes phenylalanine ammonia-lyase (PAL), chalcone synthase (CHS), chalcone isomerase (CHI), and hydroxyproline-rich glycoprotein (HRGP) in bean (Phaseolus vulgaris L.) plants colonized by the arbuscular mycorrhizal (AM) fungus Glomus intraradices , and post-infected with the soil-borne pathogen Rhizoctonia solani. Pre-colonization of bean plants by the AM fungus did not significantly reduce the severity of rot symptoms. RNA blot analysis revealed a systemic increase in transcript levels of the four defense-related genes in response to R. solani infection. On the other hand, pre-colonization of bean plants with G. intraradices elicited no change in PAL, CHS and CHI transcripts, but an increase of HRGP transcripts in leaves was detected. A differential and systemic alteration in the expression of all four defense genes was observed in AM beans post-infected with R. solani. Depending on the time after infection with R. solani and the tissue examined, varying responses from stimulation, suppression, to no change in transcript levels were detected.

The effect of the arbuscular mycorrhizal symbiosis at reducing the incidence of root diseases has received considerable attention. However, information on the role of mycorrhizae in reducing disease incidence of Fusarium root rot of beans (Phaseolus vulgaris), caused by the root pathogen Fusarium solani f. sp. phaseoli, is scarce. A study was undertaken to investigate how the arbuscular mycorrhizal fungus (AMF) Glomus intraradices affects disease development and population number of F. solani f. sp. phaseoli in the mycorhizosphere of bean plants growing in an experimental microcosm unit. This newly designed unit facilitated the spatial monitoring and quantification of both the symbiont and pathogen in different ecological soil regions of the mycorrhizosphere using compartmentation based on a physical segregation of roots, colonized or not by AMF (rhizosphere), AMF mycelium alone (mycosphere), or none (bulk soil). To study the interaction between both organisms, the experimental set-up consisted of a randomized complete block design using bean seedlings pre-colonized or not for 28 days by G. intraradices and infected or not for 6 days with F. solani f. sp. phaseoli. Monitoring of population number of the symbiont and the pathogen in bean plants and in the different mycorrhizosphere soil compartments was achieved with quantitative real-time PCR using specific molecular probes for each fungus, and with cultivation-dependant or morphological based methods. The results of this study indicated that non-mycorrhizal bean plants infected with the pathogen had typical root rot symptoms while infected plants that were pre-colonized by G. intraradices remained free of disease. The population number of F. solani f. sp. phaseoli was significantly reduced in the root system and in each of the mycorrhizosphere soil compartments of mycorrhizal infected plants. The mycorrhizosphere population of G. intraradices was not significantly modified, although the p

Jasmonic acid (JA) and its methyl ester, methyl jasmonate (MeJA), collectively termed as jasmonates, are naturally occurring in plants and are important signal molecules involved in induced disease resistance and stress responses of plants. Besides their role in-planta, they are also rhizosecreted by root cells. Germinating soybean seeds exude large quantities of jasmonic acid; however there is no knowledge regarding how jasmonates influence cells of the soybean symbiont, Bradyrhizobium japonicum, in the rhizosphere. We studied the role of jasmonates in the soybean-Bradyrhizobium symbiosis. Bradyrhizobium japonicum cultures were induced with jasmonates and the resulting Nod factors were isolated and purified. Our results showed that JA and MeJA strongly induced the production of Nod factors by the tested B. japonicum strains. When added together, genistein and jasmonates resulted in greater LCO production than either one alone. Jasmonic acid is produced from linoleic and linolenic acids via the octadecanoid pathway; we studied the effect of these two fatty acids on B. japonicum nod gene induction. Interestingly both linoleic and linolenic acids induced the nod genes and caused LCO production by B. japonicum cultures. Since jasmonates induced the nod genes and also caused LCO production in B. japonicum, I conducted experiments in the greenhouse and field to determine whether incubation of B. japonicum with JA or MeJA prior to inoculation increases soybean nodulation variables and grain yield. Both genistein and McJA increased nodule number and nodule dry weight per plant. Due to enhanced nitrogen fixation, attributed to increased nodule number and weight, soybean dry matter accumulation and grain yield were increased. These results document the discovery of jasmonates and their precursors as new signal molecules in the Bradyrhizobium - soybean nitrogen fixing symbiosis.