Indiana University-Purdue University Indianapolis (IUPUI) / Alzheimer’s disease (AD) is a neurodegenerative disorder resulting in progressive memory loss, brain atrophy, and eventual death. AD pathology is characterized by the accumulation of neurotoxic amyloid-beta (Aβ) plaques, synapse loss, neurofibrillary tangles (NFTs), and neurodegeneration. The APOE4 allele is associated with a 3-fold increased risk for AD and results in increased Aβ plaque deposition, reduced Aβ clearance, and reduced synaptic plasticity. Although APOE expression is upregulated in microglia in AD, APOE is expressed primarily by astrocytes in the CNS. It is not well understood how astrocytic APOE drives the mechanisms that result in worsened AD outcomes. Here, digital spatial profiling and bioinformatics data suggest that APOE4 causes transcriptional dysregulation in early AD and may disrupt neuronal processes via astrocytes. Whole transcriptome data from plaque and non-plaque regions in the cortices and hippocampus of 4- and 8-month-old AD model mice expressing humanized APOE4/4 or APOE3/3 (control) were analyzed. Transcriptional dysregulation was increased in APOE4/4 AD mice compared to that in APOE3/3 at 4 but not 8 months of age, suggesting that early dysregulation of APOE4-driven disease mechanisms may shape degenerative outcomes in late-stage AD. Additionally, APOE4/4 potentially functions via plaque-independent mechanisms to influence neuronal function in early AD before the onset of pathology. Single-nuclei RNA sequencing data were obtained from human post-mortem astrocytes and the bioinformatic analyses revealed a novel astrocyte subtype that highly expresses several top genes involved in functional alterations associated with APOE4, including neuronal generation, development, and differentiation, and synaptic transmission and organization. Overall, our findings indicate that APOE4 may drive degenerative outcomes through the presented astrocyte candidate pathways. These pathways represent potential targets for investigations into early intervention strategies for APOE4/4 patients. / 2024-05-22

The objective of the completed research was to characterize the morphology of individual neurons within monolayer networks of fetal mouse spinal tissue via intraperikaryal injections of horseradish peroxidase (HRP). Thirty labelled neurons were reconstructed via camera lucida drawings and morphometrically analyzed.

Yes / Motor neuron disease (MND) is a progressive neurodegenerative disease with no effective treatment. One of the principal pathological hallmarks is the deposition of TAR DNA binding protein 43 (TDP-43) in cytoplasmic inclusions. TDP-43 aggregation occurs in both familial and sporadic MND; however, the mechanism of endogenous TDP-43 aggregation in disease is incompletely understood. This study focused on the induction of cytoplasmic accumulation of endogenous TDP-43 in the motor neuronal cell line NSC-34. The endoplasmic reticulum (ER) stressor tunicamycin induced casein kinase 1 (CK1)-dependent cytoplasmic accumulation of endogenous TDP-43 in differentiated NSC-34 cells, as seen by immunocytochemistry. Immunoblotting showed that induction of ER stress had no effect on abundance of TDP-43 or phosphorylated TDP-43 in the NP-40/RIPA soluble fraction. However, there were significant increases in abundance of TDP-43 and phosphorylated TDP-43 in the NP-40/RIPA-insoluble, urea-soluble fraction, including high molecular weight species. In all cases, these increases were lowered by CK1 inhibition. Thus ER stress signalling, as induced by tunicamycin, causes CK1-dependent phosphorylation of TDP-43 and its consequent cytosolic accumulation. / Funded by a biomedical research grant from the Motor Neurone Disease Association (ref Rattray/Apr15/837-791). The Bioimaging Facility microscopes used in this study were purchased with grants from BBSRC, Wellcome Trust and the University of Manchester Strategic Fund.

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Early growth response gene – 1 (Egr1) encodes a protein widely present in mammalian body, such as connective tissue, cardiac tissue, the liver, and the brain. As a transcription factor (TF), it is involved in processes that take place in the endocrine, digestive, immune, musculo-skeletal and central nervous systems, for instance, B cell maturation upon B cell receptor activation, tendon repair upon mechano-stimulation, and long-term spatial memory formation. In mammalian brains, EGR1 controls the responses to environmental stimuli such as chronic stress and physical contact. It also participates in processes such as long-term memory consolidation and synapse re-structuring. It plays a role in enacting responses and qualities of gene transcription cascades upon neuronal stimulation. Inside the epigenetic realm, EGR1 recruits Ten-eleven translocation methylcytosine dioxygenase 1 (TET1) to remove DNA methylation at target loci. Due to its critical functions during brain development and upon neuronal activation, mis-regulation of EGR1 is associated with neuropsychological disorders such as post-traumatic stress disorder (PTSD) and schizophrenia (SCZ) in humans. In this study, we performed bioinformatics analysis with brain methylomes and predicted EGR1 may interact with myocyte enhancer factor 2C (MEF2C), which is known to be involved in many similar processes as EGR1, such as synapse architecture, cell migration, and learning and memory. EGR1 and MEF2C ChIP-seq data derived from mouse frontal cortex suggest these two proteins may regulate a common set of downstream genes. To begin, co-immunoprecipitation experiments were performed with HEK293T cells co-transfected with EGR1-FLAG and MEF2C-HA tagged constructs, allowing for specific interaction identification without endogenous protein expression interference. Furthermore, co-immunoprecipitation experiments performed with brain tissues additionally indicated the two proteins interact with each other endogenously. Altogether, this study provides protein-protein interaction evidence for EGR1 and MEF2C in cultured HEK293 cells and in the cortices of adult male mice. This information provides a foundation for future examinations of how these two TFs interact to initiate cascading events following neuronal stimulation. / Master of Science / Early growth response gene – 1 (EGR1) encodes a protein that can be found in animals such as fruit flies, mice, rats, and humans. In mammals, it is widely expressed in the cardiovascular, endocrine, digestive, immune, musculo-skeletal and central nervous systems (CNS). Within the CNS, EGR1 is known as an essential transcription factor involved in brain development. More specifically, EGR1 plays a role in how the early brain develops in response to environmental stimuli, formation of synapse architecture and certain types of memories. Many gene networks involved in growth and development rely on EGR1 to regulate functions such as synapse reformation after exposure to the environment. EGR1 is known to have numerous partners with whom it interacts to execute its functions. It is also involved in epigenetic regulation, which is a process by which genes are silenced or activated without changing DNA sequences in the genome. EGR1 may directly interact with TET1 to demethylate EGR1 target sites in the genome, and to increase gene transcription. In memory development, EGR1 plays a key role ensuring short-term auditory fear memory can be converted to long-term memory, and also ensures long-term spatial memory. In this study, our computational analyses suggest that EGR1 may interact with MEF2C. This work provides evidence of a protein-protein interaction of EGR1 and MEF2C in cultured cells and in the brain cortical areas of mice. Such an interaction may explain why these two genes regulate overlapped biological processes within the brain and sheds lights on how cascading events are initiated following neuronal stimulation.

Abnormal expression of the eukaryotic translation elongation factor 1A (eEF1A) has been implicated in disease states such as motor neuron degeneration and cancer. Two variants of eEF1A are found in mammals, named eEF1A1 and eEF1A2. These two variants are encoded by different genes, produce proteins which are 92% identical but have very different patterns of expression. eEF1A1 is almost ubiquitously expressed while eEF1A2 is expressed only in specialised cell types such as motor neurons and muscle. A spontaneous mutation in eEF1A2 results in the wasted mouse phenotype which shows similar characteristics in the mouse to those seen in human motor neuron degeneration. This mutation has been shown to be a 15.8kb deletion resulting in the complete loss of the promoter region and first non coding exon of eEF1A2 which completely abolishes protein expression. The main aim of this project was to further investigate the role of eEF1A2 in motor neuron degeneration. Firstly, although the wasted phenotype is considered to be caused by a recessive mutation, I established a cohort of aged heterozygote mice to evaluate whether any changes are seen later in life that might model late onset motor neuron degeneration. A combination of behavioural tests and pathology was used to compare wild type and heterozygous mice up to 21 months of age. Whilst results indicate that there is no significant difference between ageing heterozygotes and wildtype controls, there is an indication that female heterozygote mice perform slightly worse that wildtype controls on the rotarod (a behavioural test for motor function). Secondly, I aimed to investigate the primary cause of the wasted pathology by generating transgenic wasted mice expressing neuronal eEF1A2 only. This would complement previous experiments in the lab which studied transgenic wasted mice expressing eEF1A2 in muscle only. Unfortunately the expression of eEF1A2 in the transgenic animals was not neuronal specific. However a transgenic line with expression of eEF1A2 in neurons and skeletal muscle but not cardiac muscle has been generated which clearly warrants further investigation. Thirdly, I wished to assess whether eEF1A2 has any role in human motor neuron degeneration. To achieve this, eEF1A2 expression was investigated in spinal cords from human motor neuron disease (MND) patients. Preliminary data suggests that motor neurons from some MND patients express significantly less eEF1A2 than motor neurons of control samples. Further work is required to confirm these findings. Finally, I investigated the individual roles of eEF1A1 and eEF1A2 in the heat shock response. I used RNAi to ablate each variant separately in cells and subsequently measured the ability of each variant individually to mount a heat shock response. Results indicate a clear role for eEF1A1 but not eEF1A2 in the induction of heat shock. This may explain in part why motor neurons exhibit a poor heat shock response as they express eEF1A2 and not eEF1A1. These experiments shed light on our understanding of the role of eEF1A2 in motor neuron degeneration and uncover many new avenues of future investigation.

O sistema visual lida com mudanças significativas na quantidade absoluta de fótons no meio ambiente, que varia 10 a 12 unidades logarítmicas ao longo de um dia. Parte desta versatilidade decorre da existência de fotorreceptores, bastonetes e cones, ativos em luminosidades médias diferentes, e outra parte é consequência de mecanismos de controle de ganho pós-receptorais, que ajustam a faixa dinâmica da retina à luminosidade média. Já na primeira sinapse visual, a atividade de muitos fotorreceptores converge para as células bipolares (BCs), neurônios de segunda ordem. Em mamíferos, supõe-se que o número de neurônios convergentes mantém-se relativamente fixo durante a vida adulta do organismo, embora a árvore dendrítica das BCs aumente de tamanho. No caso de peixes teleósteos, o grau de convergência neuronal para as BCs aumenta com a idade em função de neurogênese e sinaptogênese constantes. Como a relação entre a estrutura celular e o grau de convergência sináptica influencia a integração somática de sinais, estudamos os efeitos do crescimento celular acompanhado de variações na convergência sináptica no caso específico da BC ligada a bastonetes. Para tanto, desenvolvemos um modelo computacional deste tipo celular e dos bastonetes a ela conectados utilizando o ambiente de simulação NEURON, com base em dados de literatura e obtidos por nosso grupo de pesquisa a respeito de sua geometria, conectividade e biofísica, e simulamos diversos tipos de estimulação. Para mimetizar níveis escotópicos de luminosidade, estimulamos apenas um dos bastonetes convergindo para a BC modelo; para mimetizar níveis mesópicos, todos os bastonetes foram estimulados concomitantemente. Estas simulações foram realizadas primeiramente com um modelo de BC contendo apenas condutâncias sinápticas e passivas, para investigar o impacto da geometria celular na integração de sinais. A seguir, o modelo passou a incorporar condutâncias dependentes de voltagem permeáveis a potássio (K+) modeladas a partir de dados da literatura e do nosso grupo de pesquisa, para investigar o papel das mesmas no controle de ganho da sinapse entre BCs e bastonetes durante o crescimento celular. Os resultados destas simulações indicam que o aumento da árvore dendrítica da BC com o crescimento hiperpolariza seu potencial de repouso e aumenta as amplitudes de resposta, devido ao aumento da área de superfície de membrana contendo canais passivos com potencial de reversão negativo. Já o aumento da convergência de bastonetes para a BC despolariza seu potencial de repouso e diminui as amplitudes resposta, o que equivaleria a uma diminuição da sensibilidade 3 em células reais. Mais ainda, o aumento no grau de convergência contribui para a diminuição das latências de resposta da BC, ao passo que o crescimento celular aumenta as latências linearmente. A inserção de canais dependentes de voltagem nos terminais dendríticos da BC aproxima as amplitudes e diminui as latências de resposta de BCs com diferentes graus de convergência. Além disso, tais canais reduzem os efeitos decorrentes do crescimento celular descritos anteriormente, tornando a amplitude e latência de resposta independentes do tamanho da árvore dendrítica. Desse modo, canais de K+ dependentes de voltagem dendríticos estabilizam as amplitudes e latências de resposta da BC ao longo do crescimento, contribuindo para a coerência da mensagem passada para as outras camadas da retina e, posteriormente, para o cérebro. Estes resultados sugerem que correntes ativas são fundamentais não apenas para controlar o ganho das sinapses entre bastonetes e BCs em um mesmo estado de adaptação, mas também para estabilizar o potencial de repouso e velocidade e amplitudes de resposta dos neurônios ao longo do crescimento / The visual system deals with significant changes in the absolute quantity of photons in the environment, which vary 10 to 12 log units throughout a single day. Part of this versatility is due to the existence of different photoreceptors, rods and cones, which function at different mean light intensities, and due to post-receptor gain control mechanisms, which adjust the dynamic range of the retina to the mean luminosity. At the first visual synapse, the activity of many photoreceptors converges onto bipolar cells (BCs), second order neurons of the retina. In mammals, the degree of convergence is supposed to be constant throughout adult life, despite evidence of morphological changes in the dendritic structure of BCs. In teleost fish, however, the convergence of rods to BCs increases with age due to constant retinal neurogenesis and synaptogenesis. Since cellular structure and synaptic convergence influence somatic signal integration, we investigated the effects of cellular growth and synaptic convergence in the responses of the rod bipolar cell. We developed a computational model of a BC-rod circuitry within the NEURON simulation environment, based on literature data and on data collected by our own research group regarding the geometry, connectivity and biophysics of BCs. To simulate scotopic light levels, only one of the rods converging to the model BC was stimulated. Mesopic light levels were simulated by concomitantly stimulating all rods. We initially investigated the impact of cell geometry in somatic signal integration, by studying a model BC containing only passive and synaptic conductances. We subsequently inserted a voltage-gated potassium (K+) conductance in the dendritic tips of the model in order to investigate its role in controlling the gain of the rod-BC synapse during growth. Our results indicate that increasing the dendritic tree leads to hyperpolarization of the BC resting potential, due to the larger membrane surface containing the passive conductance, which has a negative reversal potential. Increasing rod convergence, on the other hand, depolarizes the BC resting potential and decreases response amplitudes, which would be equivalent to a decrease in sensitivity in a real cell. In addition, increases in convergence reduce response latencies, whereas cellular growth increases latencies linearly. The insertion of voltage-gated K+ conductances in the dendritic tips of the BC, in turn, aproximates the response amplitudes and decreases response latencies of BCs with different synaptic convergences. Moreover, voltage-gated conductances reduce the consequences of cellular growth, rendering response amplitudes and latencies independent of dendritic 5 tree size. These active conductances therefore contribute to signal consistency. Our results suggest that active currents not only control the gain of the rod-BC synapse in a given adaptive state, but also stabilize the BC resting potential, as well as response amplitude and latency during growth