Indiana University-Purdue University Indianapolis (IUPUI) / Mutations in the gene encoding for leucine rich repeats kinase 2 (LRRK2) are commonly found in Parkinson’s disease. Recently, we found that the disease-associated point mutations at residue R1441 in the G domain (ROC) of LRRK2 resulted in perturbation of its GTPase activity. In this study, we compare the biochemical and biophysical properties of the ROC domain of LRRK2 carrying the PD-associated mutations at residue R1441 with those of the wild-type. We found that the disease-associated mutations (R1441C/G/H) showed marked quaternary structure compared to wild-type, in that the latter existed in solution in both monomeric and dimeric conformations dynamically regulated by GDP/GTP binding state, while we detected only monomeric conformation for three disease-associated mutants. To understand the structural basis for this plasticity and the activity reduction in the mutants, we solved a 1.6 Å crystal structure of the wild type ROC that shows a stable dimeric conformation in which the switch motifs and inter-switch regions mediate extensive interactions at the dimer interface. Residue R1441, where PD-associated mutations occur, forms exquisite interactions at the interface, thus suggesting a critical role of this residue in maintaining a dynamic dimer-monomer interconversion and conformational flexibility of the switch motifs. Consistently, substituting R1441 for other arbitrary mutations (R1441K/S/T) lead to similar perturbation of GTPase activity and dimerization defects as observed in the disease-associated mutants. Locking the ROC domain in either dimeric or monomeric conformations by engineered disulfide bond alters the binding affinity to GTP (but not GDP) and significantly reduce GTPase activity, thus suggesting that the dynamic dimer-monomer interconversion and conformational plasticity are essential for ROC function as a molecular switch modulating the kinase activity of LRRK2.

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Knee pain can alter lower-extremity neuromechanics and often results in functional disability. The relationship between lower-extremity neuromechanical alterations, due to anterior knee pain, and articular cartilage condition is unclear. The purpose of this study was to determine the independent effect of anterior knee pain during running on articular cartilage condition, as reflected by serum cartilage oligomeric matrix protein concentrations and muscle cocontraction duration. Seven men and five women completed a 30-min run in three different sessions: control (no infusion), sham (isotonic saline infusion), and pain (hypertonic saline infusion). Saline was infused into the right infrapatellar fat pad for the duration of the run. Subject-perceived pain was recorded every 3 min on a 100-mm visual analog scale. During the run, bilateral electromyography was recorded for five leg muscles, and heel and toe markers were used to track foot position. During the 30-min run of the pain session average subject-perceived pain was 27.8 (SD = 2.3 mm) and 19.7 (SD = 1.9) mm greater than during the control (0.0 mm) and sham (8.1 mm) session, respectively (p < 0.01). Knee pain while running did not result in changes in muscular cocontraction duration (p = 0.13). Blood samples were drawn prior to the run, immediately following the run, and 60 min following the run. Samples were analyzed using enzyme-linked immunosortbent assay to determine serum cartilage oligomeric matrix protein concentration. Average serum cartilage oligomeric matrix protein concentration was 14% greater at immediate post run (132.19 ± 158.61 ng/ml; Range = 22.61-290.81 ng/ml) relative to pre run (116.02 ± 118.87 ng/ml; Range = 19.81-234.89 ng/ml) (p < 0.01), and 18% less at 60 min post run (108.45 ± 171.78 ng/ml; Range = 20.84-280.23 ng/ml) relative to immediate post run (Figure 4; p < 0.01). Serum cartilage oligomeric matrix protein did not significantly differ between baseline and 60 min post-exercise (p = 0.29). There was not a difference in cartilage oligomeric matrix protein concentration between sessions. Knee pain while running does not cause an increase in serum cartilage oligomeric matrix protein concentration (p = 0.29). There are two important findings from this study. First, anterior knee pain during a 30 min running session does not appear to independently affect cartilage oligomeric matrix protein concentrations. This implies other factors, aside from anterior knee pain alone, influence articular cartilage degradation during movement that occurs while individuals are experiencing anterior knee pain. Second, the present experimental anterior knee pain model can be used to evaluate the independent effects of anterior knee pain over an extended duration while subjects perform a dynamic activity like running.

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Polyedrisk oligomer silsesquioxane (POSS) är molekyler som har en inorganisk ryggrad med organiska grupper fa ̈sta utan på. Själva kåren har en bur liknande form och har en hög termisk stabilitet tack vare kisel (Si) och syre (O) som den består av. Det organiska grupperna som kan fästas på kåren kan variera för att få en molekyl som är anpassad för det material den ska blandas in i, tillexempel polyvinylklorid (PVC). POSS molekylerna kan blandas in i material antigen fysiskt eller kemiskt beroende på vilka organiska grupper molekylen består av. Tack vare den termiska stabiliteten POSS är på en intressant molekyl att använda som ett alternativt flamskyddsmedel till existerande flamskyddsmedel.  Det olika POSS materialen var producerade med lite olika reaktions parametrar och var gjorda av Funzionano AS i Norge, Porsgrunn. Materialet har bevarat olika lång tid men det olika POSS materialen har också olika funktionella grupper. Provet med namn SF458 211122 var också adderat till PVC materialet för att se om det påverkade PVC:s termiska egenskaper.  Syftet med detta master arbete är att kolla om tiden proverna bevaras, olika funktionella grupper och om olika reaktions parametrar kommer påverka det termiska egenskaperna. Dessa parametrar utforskas genom att använda analys instrumenten TGA/DSC och DSC. Men också för att se om POSS förbättrar PVC:s termiska egenskaper.  Resultaten visar att 3 av det 4 olika SF458 proverna hade liknande glasstransaktions temperaturer (Tg) som är runt 27 °C även om det förvarats olika lång tid. 1 av det 4 olika SF458 hade högre Tg vilket kan bero p ̊a att den syntesen hade andra reaktions förhållanden i sista reaktions steget bland annat. Smältpunkten och mängden prov kvar efter TGA analyserna kan påverkas av förvaringstiden eller reaktions förhållandena. För att få fram vad som påverkar vad måste mer forskning göras. / Polyhedral oligomeric silsesquioxane (POSS) are molecules with an inorganic backbone which has organics groups attached to the backbone. The backbone is like a cage and the functional groups are arms that goes out from the cage. The inorganic backbone does so the molecule has high thermal stability and the functional groups make it possible to tailor the molecule so it can be easier to physical or chemical blend it into a material, like thermoplastics. The thermal properties of POSS make it to an interesting alternative as a flame retardant since it is also not has hazardous as other common flame retardants.  The different POSS material have been synthesised with some different reaction parameters and were prepared by Funzionano AS in Norway, Porsgrunn. The material have been stored for different times but also the cage have different functional groups attached to it. POSS named SF458 211122 were also physically incorporated to polyvinyl chloride (PVC) to see if it have any effect on the thermal properties.  The aim of the study is to see if the time of storage, different functional groups and different synthesis parameters affect the thermal properties of the POSS material by using DSC and TGA/DSC instruments. But also to see if the thermal properties of PVC is improved when POSS is physically added.  The results showed that 3 of 4 of the different SF458 samples had similar glass transition temperatures (Tg), around 27 °C so the time of storage does not affect that property. Since 1 of the 4 samples had a higher Tg is probably due to other synthesis conditions. The affect in melting point and amount of residue can be effected by either the time of storage or the parameters for the synthesis. So, further research needs to be done.

The reactivity of chemical warfare agents (CWAs) and CWA simulants on organic and oxide surfaces is not currently well understood, but is of substantial importance to the development of effective sensors, filters and sorbent materials. Polyurethane coatings are used by the armed forces as chemical agent resistive paints to limit the uptake of CWAs on surfaces, while the use of metal oxides has been explored for decontamination and protection purposes. To better understand the chemical nature of the interactions of organophosphonate simulants with these surfaces, an ultra-high vacuum environment was used to isolate the target interactions from environmental gaseous interferences. The use of highly-characterized surfaces, coupled with molecular beam and dosing capabilities, allows for the elucidation of adsorption, desorption, and reaction mechanisms of CWA simulants on a variety of materials. Model urethane-containing organic coatings were designed and applied toward the creation of well-ordered thin films containing carbamate linkages. In addition, novel trisilanolphenyl-polyhedral oligomeric silsesquioxane (POSS) molecules were used to create Langmuir-Blodgett films containing reactive silanol groups that have potential use as sensors and coatings. The uptake and reactivity of organophosphonates and chlorophosphates on these surfaces is the focus of this study. Surfaces were characterized before and after exposure to the phosphates using a number of surface sensitive techniques including: contact angle goniometry, reflection-absorption infrared spectroscopy (RAIRS), X-ray photoelectron spectroscopy (XPS) and temperature-programmed desorption (TPD) measurements. In conjunction with surface probes, uptake coefficients were monitored according to the King and Wells direct reflection technique. The integration of these analytical techniques provides insight and direction towards the design of more effective chemical agent resistant coatings and aids in the development of more functional strategies for chemical warfare agent decontamination and sensing. / Ph. D.

Single wavelength ellipsometry measurements at Brewster's angle provide a powerful technique for characterizing ultrathin polymeric films. By conducting the experiments in different ambient media, multiple incident media (MIM) ellipsometry, simultaneous determinations of a film's thickness and refractive index are possible. Poly(tert-butyl acrylate) (PtBA) films serve as a model system for the simultaneous determination of thickness and refractive index (1.45 at 632 nm). Thickness measurements on films of variable thickness agree with X-ray reflectivity results. The method is also applicable to spincoated films where refractive indices of PtBA, polystyrene and poly(methyl methacrylate) are found to agree with literature values within experimental error. Likewise, MIM ellipsometry is utilized to simultaneously obtain the refractive indices and thicknesses of thin films of trimethylsilylcellulose (TMSC), regenerated cellulose, and cellulose nanocrystals where Langmuir-Blodgett (LB) films of TMSC serve as a model system. Ellipsometry measurements not only provide thickness and optical constants of thin films, but can also detect thermally induced structural changes like surface glass transition temperatures (Tg) and layer deformation in LB-films. Understanding the thermal properties of the polymer thin films is crucial for designing nanoscale coatings, where thermal properties are expected to differ from their corresponding bulk properties because of greater fractional free volume in thin films and residual stresses that remain from film preparation. Polyhedral oligomeric silsesquioxane (POSS) derivatives may be useful as a nanofiller in nanocomposite formulations to enhance thermal properties. As a model system, thin films of trisilanolphenyl-POSS (TPP) and two different molar mass PtBA were prepared as blends by Y-type Langmuir-Blodgett film deposition. For comparison, bulk blends were prepared by solution casting and the samples were characterized via differential scanning calorimetry (DSC). Our observations show that surface Tg is depressed relative to bulk Tg and that magnitude of depression is molar mass dependent for pure PtBA films. By adding TPP as a nanofiller both bulk and surface Tg increase. Whereas, bulk Tg shows comparable increases for both molar masses, the increase in surface Tg for higher molar mass PtBA is greater than for lower molar mass PtBA. These studies show that POSS can serve as a model nanofiller for controlling Tg in nanoscale coatings. / Ph. D.

Thin film bilayers and blends composed of polymers and nanoparticles are increasingly important for technological applications that range from space survivable coatings to novel drug delivery systems. Dewetting or spontaneous hole formation in amorphous polymer films and phase separation in multicomponent polymer films can hinder the stability of these systems at elevated temperatures. Hence, fundamental understanding of dewetting and phase separation in polymer/nanoparticle bilayer and blend films is crucial for controlling transport and thermomechanical properties and surface morphologies of these systems. This dissertation provides studies on morphological evolution driven by phase separation and/or dewetting in model polymer/nanoparticle thin film bilayers and blends at elevated temperatures. Morphological evolution in dewetting bilayers of poly(t-butyl acrylate) (PtBA) or polystyrene (PS) and a polyhedral oligomeric silsesquioxane (POSS), trisilanolphenyl-POSS (TPP) is explored at elevated temperatures. The results demonstrate unique dewetting morphologies in both PtBA/TPP and PS/TPP bilayers that are significantly different from those typically observed in dewetting polymer/polymer bilayers. Upon annealing the PtBA/TPP bilayers at 95°C, a two-step dewetting process is observed. PtBA immediately diffuses into the upper TPP layer leading to hole formation and subsequently the holes merge to form interconnected rim structures in the upper TPP layer. Dewetting of both the TPP and PtBA layers at longer annealing times leads to the evolution of scattered holes containing TPP-rich, fractal aggregates. The fractal dimensions of the TPP-rich, fractal aggregates are ~2.2 suggesting fractal pattern formation via cluster-cluster aggregation. Dewetting in PS/TPP bilayers also proceeds via a two-step process; however, the observed dewetting morphologies are dramatically different from those observed in PtBA/TPP bilayers. Cracks immediately form in the upper TPP layer during annealing of PS/TPP bilayers at 200°C. With increasing annealing times, the cracks in the TPP layer act as nucleation sites for dewetting and aggregation of the TPP layer and subsequent dewetting of the underlying PS layer. Complete dewetting of both the TPP and PS layers results in the formation of TPP encapsulated PS droplets. Phase separation in PtBA/TPP thin film blends is investigated as functions of annealing temperature and time. The PtBA/TPP thin film blend system exhibits an upper critical solution temperature (LCST) phase diagram with a critical composition and temperature of 60 wt% PtBA and ~70°C, respectively. Spinodal decomposition (SD) is observed for 60 wt% PtBA blend films and off-critical SD is seen for 58 and 62 wt% PtBA blend films. The temporal evolution of SD in 60 wt% PtBA blend films is also explored. Power law scaling for the characteristic wavevector with time (q ~ t^n with n = -1/4 to -1/3) during the early stages of phase separation yields to domain pinning at the later stages for films annealed at 75, 85, and 95°C. In contrast, domain growth is instantly pinned for films annealed at 105°C. Our work provides an important first step towards understanding how nanoparticles affect polymer thin film stability and this knowledge may be utilized to fabricate surfaces with tunable morphologies via controlled dewetting and/or phase separation. / Ph. D.

For over a century, Langmuir films have served as excellent two-dimensional model systems for studying the conformation and ordering of amphiphilic molecules at the air/water (A/W) interface. With the equipment of Wilhelmy plate technique, Brewster angle microscopy (BAM), and surface light scattering (SLS), the interfacial phase and rheological behavior of Langmuir films can be investigated. In this dissertation, these techniques are employed to examine Langmuir films of polyhedral oligomeric silsesquioxane (POSS), polymer blends, and magnetic nanoparticles (MNPs). In a first time, SLS is employed to study POSS molecules. The interfacial rheological properties of trisilanolisobutyl-POSS (TiBuP) indicate that TiBuP forms a viscoelastic Langmuir film that is almost perfectly elastic in the monolayer state with a maximum dynamic dilational elasticity of around 50 mNâ m-1 prior to film collapse. This result suggests that TiBuP can serve as model nanofiller with polymers. As an interesting next step, blends of TiBuP and polydimethylsiloxane (PDMS) with different compositions are examined via surface pressure (surface pressureâ surface area occupied per molecule (A) isotherms and SLS. The results show that TiBuP, with its attendant water, serves as a plasticizer and lowers the dilational modulus of the films at low surface pressure. As surface pressure increases, composition dependent behavior occurs. Around the collapse pressure of PDMS, the TiBuP component is able to form networks at the A/W interface as PDMS collapse into the upper layer. Blends of non-amphiphilic octaisobutyl-POSS (OiBuP) and PDMS are also studied as an interesting comparison to TiBuP/PDMS blends. In these blends, OiBuP serves as a filler and reinforces the blends prior to the collapse of PDMS by forming "bridge" structure on top of PDMS monolayer. However, OiBuP is non-amphiphilic and fails to anchor PDMS chains to the A/W interface. Hence, OiBuP/PDMS blends exhibit negligible dilational viscoelasticity after the collapse of PDMS. Furthermore, the phase behavior of PDMS blended with a trisilanol-POSS derivative containing different substituents, trisilanolcyclopentyl-POSS (TCpP), is also investigated via the Wilhelmy plate technique and BAM. These TCpP/PDMS blends exhibit dramatically different phase behavior and morphological features from previously studied POSS/PDMS blends, showing that the organic substituents on trisilanol-POSS have considerable impact on the phase behavior of POSS/PDMS blends. The interfacial rheological behavior of tricarboxylic acid terminated PDMS (PDMS-Stabilizer) and PDMS stabilized MNPs are investigated and compared with "regular" PDMS containing non-polar end groups. The tricarboxylic acid end group of the PDMS-Stabilizer leads to a different collapse mechanism. The PDMS stabilized MNPs exhibit viscoelastic behavior that is similar to PDMS showing all the tricarboxylic acid end groups are bound to the magnetite cores. Studying the interfacial behavior of different Langmuir films at the A/W interface provides us insight into the impact of molecule-molecule and molecule-subphase interactions on film morphology and rheology. These results are able to serve as important guides for designing surface films with preferred morphological and mechanical properties. / Ph. D.