No description available.

Throughout the study of polymeric Langmuir monolayers at the air/water (A/W) interface, the Wilhelmy plate and Langmuir-Blodgett (LB) techniques along with Brewster angle microscopy (BAM) have been identified as key methods for acquiring structural, thermodynamic, rheological and morphological information. These techniques along with surface light scattering (SLS), a method for probing a monolayer's dynamic dilational rheological properties, will be used to characterize homopolymers, poly(ethylene oxide) (PEO) and poly(ethylene glycol) (PEG), and a new class of novel polymeric surfactants, telechelic (POSS-PEG-POSS) and hemi-telechelic (POSS-PEG) polyhedral oligomeric silsesquioxane (POSS) derivatives of PEG. PEO with number average molar mass, Mn > ~ 18 kg·mol-1 form stable spread Langmuir films at the A/W interface, while oligomeric PEG have ï -A isotherms that deviate from high molar mass PEO. Nonetheless, SLS reveals that the dynamic dilational viscoelastic properties of any Mn PEG(PEO) only depend on ï and not Mn. Likewise, POSS-PEG-POSS telechelics exhibit molar mass dependent ï -A isotherms, where low ï regimes (ï < 1 mN·m-1) have PEG-like behavior, but high ï regimes were dominated by POSS-POSS interactions. SLS studies reveal that the dynamic dilational moduli of POSS-PEG-POSS are greater than either PEO or an analogous POSS compound, trisilanolcyclohexyl-POSS. The ability to control rheological properties and the hydrophilic-lipophilic balance even allows one POSS-PEG-POSS (PEG Mn = 1 kg·mol-1) to form Y-type LB-multilayer films. For POSS-PEG systems, comparisons at comparable POSS:PEG ratios reveal short PEG chains (PEG Mn ~ 0.5 kg·mol-1) yield similar viscoelastic properties as POSS-PEG-POSS (PEG Mn ~ 1 kg·mol-1), while longer PEG chains (PEG Mn ~ 2 kg·mol-1) yield lower modulus films than comparable POSS-PEG-POSS. These differences are attributed to brush-like PEG conformations in short POSS-PEG versus mushroom-like PEG conformations in long POSS-PEG at the A/W interface. These results provide insight for designing PEG-based amphiphilic nanoparticles with controlled interfacial rheology. / Ph. D.

Bacterial DNA replication can stall at DNA lesions, leading to cell death if the damage fails to be repaired. To circumvent this, bacteria possess a mechanism called translesion DNA synthesis (TLS) to allow DNA damage bypass. The ImuABC TLS mutasome comprises the RecA domain-containing protein ImuA, the inactive polymerase ImuB, and the error-prone polymerase ImuC. ImuA and ImuB are necessary for the mutational function of ImuC that can lead to antimicrobial resistance (AMR) as seen in high-priority pathogens Pseudomonas aeruginosa and Mycobacterium tuberculosis. Understanding how ImuA and ImuB contribute to this function can lead to new targets for antimicrobial development. This research aims to discover the molecular functions of ImuA and ImuB homologs from Myxococcus xanthus through structural modelling and biochemical analyses. ImuA was discovered to be an ATPase whose activity is enhanced by DNA. Based on predicted structural models of the ATPase active site, I identified the critical residues needed for ATP hydrolysis, and found that the ImuA C-terminus regulates ATPase activity. Further, ImuA and ImuBNΔ34 (a soluble truncation of ImuB) display a preference for longer single-stranded DNA and overhang DNA substrates, and their affinity for DNA was quantified in vitro. To better understand how ImuA and ImuB assemble in the TLS mutasome, bacterial two-hybrid assays determined that ImuA and ImuB can self-interact and bind one another. Mass photometry revealed that ImuA is a monomer and ImuBNΔ34 is a trimer in vitro. ImuA and ImuBNΔ34 binding affinity was quantified in vitro at 1.69 μM ± 0.21 by microscale thermophoresis, and removal of the ImuA C-terminus weakens this interaction. Lastly, ImuA and ImuBNΔ34 secondary structures were quantified using circular dichroism spectroscopy, and ImuA was modified to enable crystallization for future structural studies. Together, this research provides a better understanding of ImuABC-mediated TLS, potentially leading to novel antibiotics to reduce the clinical burden of AMR. / Thesis / Master of Science (MSc) / The antimicrobial resistance (AMR) crisis is fueled by the emergence of multi-drug resistant microbes, posing a major threat to global health and disease treatment. Bacteria can develop resistance to antibiotics through mutations in the genome. When the genome becomes damaged, bacteria can acquire these mutations by an error-prone replication mechanism called translesion DNA synthesis (TLS). In some bacteria, TLS involves a specialized enzyme complex, consisting of proteins ImuA, ImuB and ImuC, allowing replication past bulky DNA damage and lesions. The goal of this thesis is to investigate how the ImuA and ImuB proteins contribute to the functioning of this mistake-making machinery. I used biochemical and biophysical methods to identify ImuA and ImuB interactions with each other and themselves. I discovered that ImuA is an enzyme that uses energy to enhance its binding to DNA, and determined the specific amino acids involved in this function.

No description available.

The main objective of this thesis work was to gain understanding of the principles of biolubrication, focusing on synergistic effects between biolubricants. To this end surface force and friction measurements were carried out by means of Atomic Force Microscopy, using hydrophilic and hydrophobic model surfaces in salt solutions of high ionic strength (≈ 150 mM) in presence of different biolubricants. There was also a need to gain information on the adsorbed layers formed by the biolubricants. This was achieved by using a range of methods such as Atomic Force Microscopy PeakForce imaging, Quartz Crystal Microbalance with Dissipation, Dynamic Light Scattering and X-Ray Reflectometry. By combining data from these techniques, detailed information about the adsorbed layers could be obtained.The biolubricants that were chosen for investigation were a phospholipid, hyaluronan, lubricin, and cartilage oligomeric matrix protein (COMP) that all exist in the synovial joint area. First the lubrication ability of these components alone was investigated, and then focus was turned to two pairs that are known or assumed to associate in the synovial area. Of the biolubricants that were investigated, it was only the phospholipid 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) that was found to be an efficient lubricant on its own. Deposited DPPC bilayers on silica surfaces were found to be able to provide very low friction coefficients (≈ 0.01) up to high pressures, ≈ 50 MPa. A higher load bearing capacity was found for DPPC in the liquid crystalline state compared to in the gel state.The first synergy pair that was explored was DPPC and hyaluronan, that is known to associate on the cartilage surface, and we also noticed association between hyaluronan and DPPC vesicles as well as with adsorbed DPPC bilayers. By combining these two components a lubrication performance similar to that of DPPC alone could be achieved, even though the friction coefficient in presence of hyaluronan was found to be slightly higher. The synergy here is thus not in form of an increased performance, but rather that the presence of hyaluronan allows a large amount of the phospholipid lubricant to accumulate where it is needed, i.e. on the sliding surfaces.The other synergy pair was lubricin and COMP that recently has been shown to be co-localized on the cartilage surface, and thus suggested to associate with each other. Lubricin, as a single component, provided poor lubrication of PMMA surfaces, which we utilized as model hydrophobic surfaces. However, if COMP first was allowed to coat the surface, and then lubricin was added a low friction coefficient (≈ 0.03) was found. In this case the synergy arises from COMP facilitating strong anchoring of lubricin to the surface in conformations that provide good lubrication performance. / Huvudsyftet med det här avhandlingsarbetet var att öka förståelsen för den låga friktion som finns i vissa biologiska system, med fokus på synergistiska effekter mellan de smörjande molekylerna. För detta ändamål studerades ytkrafter och friktion med hjälp av atomkraftsmikroskopi. Mätningarna utfördes med hydrofila och hydrofoba modellytor i lösningar med hög salthalt (≈ 150 mM) i närvaro av smörjande biomolekyler. Det var också nödvändigt att få information om de adsorberade skikten av biomolekyler. Det åstadkoms med hjälp av en rad tekniker så som AFM PeakForce avbildning, kvartskristallmikrovåg, dynamisk ljusspridning och röntgen reflektometri. Genom att kombinera data från dessa tekniker erhölls detaljerad information om de smörjande skikten.De smörjande biomolekyler som valdes ut för studierna var en fosfolipid, hyaluronan, lubricin, and cartilage oligomeric matrix protein (COMP) vilka alla finns i synovialledsområdet. Först undersöktes den smörjande förmågan hos dessa komponenter var för sig, och sedan fokuserade vi på två par av biomolekyler som man vet eller antar bildar associationsstrukturer i synovialleder. Av de enskilda biomolekyler som undersöktes var det endast fosfolipiden 1,2-dipalmitoyl-sn-glycero-3-fosfokoline (DPPC) som visade sig vara en effektivt smörjande molekyl. Deponerade biskikt av DPPC på silikaytor gav upphov till mycket låga friktionskoefficienter (≈ 0.01) upp till höga pålagda tryck, ≈ 50 MPa. DPPC bilager i flytande kristallin fas visade sig ha högre lastbärande förmåga än DPPC bilager i geltillstånd.Det första synergistiska par som undersöktes var DPPC och hyaluronan vilka man vet associerar på broskytan, och vi visade att hyaluronan associerar med såväl DPPC vesiklar som med DPPC bilager. Genom att kombinera dessa två komponenter uppmättes en smörjande förmåga som var jämförbar med den som DPPC ensam uppvisar. Även om friktionskoefficienten var något högre i närvaro av hyaluronan. Synergieffekten här består inte av en bättre smörjande förmåga, utan istället gör närvaron av hyaluronan att de smörjande fosfolipiderna kan ansamlas i stora mängder där de behövs, dvs. på de glidande ytorna.Det andra synergiparet var lubricin och COMP vilka nyligen har visats vara lokaliserade på samma platser på broskytan, vilket tyder på att de associerar med varandra. På egen hand var lubricins smörjande förmåga av PMMA, våra hydrofoba modellytor, dålig. Emellertid, om COMP först adsorberades på PMMA och sedan lubricin tillsattes uppmättes en låg friktionskoefficient (≈ 0.03). I det här fallet består synergin av att COMP möjliggör en stark inbindning till ytan av lubricin i konformationer som ger god smörjande förmåga. / <p>QC 20141202</p> / Stiftelsen för strategisk forskning - SSF

Liées de façon covalente à des chaînes polymères, les nanoparticules POSS (polysilses-quioxanes polyédriques) permettent l’obtention de matériaux nanocomposites hybrides orga-nique/inorganique. Ces nanoparticules présentent deux intérêts majeurs: des dimensions bien définies (cœur inorganique: 0.5 nm), ainsi que leur caractère hybride ( groupements organiques entourant les cages inorganiques). Les nanocomposites polymère/POSS peuvent présenter un renfort important des propriétés mécaniques et de la stabilité thermique de la matrice polymère. Cependant, l’origine moléculaire de ce renfort reste mal comprise. Aussi, afin de mieux comprendre le renfort des propriétés mécaniques de la matrice, nous avons étudié l’effet des particules POSS sur l’organisation à l’état solide et la dynamique des chaînes po-lymères au sein d’une matrice semi-cristalline. Pour cela, nous avons considéré une série de copolymères polyéthylène-POSS, caractérisés par une large gamme de concentration en POSS. Le polyéthylène et le POSS ayant intrinsèquement tendance à cristalliser, les copolymères présentent des organisations à l’état solide complexes que nous avons caractérisés par l’utilisation combinée de la calorimétrie différentielle à balayage (DSC), de la diffraction des rayons X aux grands angles (DRX) et de la résonance magnétique nucléaire en phase solide (RMN). Dans un second volet de cette étude, nous nous sommes intéressés à la dynamique des chaînes de polyéthylène en phase amorphe et à l’évolution de celle-ci avec le taux de charge des nanocomposites. Enfin, nous avons également étudié, de façon sélective, la dynamique des segments de chaînes de polyéthylène situés au voisinage de la charge / Grafting polyhedral oligomeric silsesquioxanes (POSS) to polymer chains offers a novel avenue to prepare hybrid organic/inorganic nanocomposites. The great advantage of such an approach holds in the very well-defined dimensions of the filler particles(inorganic core: 0.5 nm), in contrast with polymer/clay systems. Polymer/POSS nanocomposites display attractive properties such as significant mechanical reinforcement and increased thermal stability. However, the molecular origins of these enhancements are still an open question. The aim of this work is to describe both bulk organization and molecular motions of the polymer chains within these materials: these molecular properties should lead to a deeper knowledge of the enhancement of the polymer-POSS mechanical properties. The systems investigated are polyethylene (PE)-POSS copolymers with various POSS contents. The (semi-)crystalline behaviour of both PE and POSS particles induces complex bulk organization of these hybrid materials. The combined use of NMR, DSC and X-ray scattering experiments enabled to monitor the variation of the solid-state organization with the filler loading. In the second part of this work, the PE chain dynamics was investigated in the amorphous phase and its variation with the filler content was considered. Lastly, selective NMR experiments were used to probe the PE chain segment mobility close to the POSS nanoparticles

O. oeni est une bactérie lactique responsable de la fermentation malolactique des vins. Un des mécanismes impliqués dans la survie de O. oeni dans ce milieu requière la synthèse de la protéine de stress de faible masse moléculaire (sHsp) Lo18. Cette sHsp exerce une activité de chaperon sur des substrats protéiques et lipidiques.Des variations de pH (5 à 9) ont permis de moduler l’oligomérisation de Lo18 in vitro et de démontrer que sa plasticité oligomérique est un élément clé pour ses activités. Des observations de la sHsp par microscopie électronique ont montré que Lo18 s’organise à pH 5 en un 16-mère composé de deux anneaux superposés ayant comme structure de base probable un dimère.La réponse adaptative de O. oeni a également été caractérisée suite à des stress fluidifiant sa membrane plasmique. Une étude transcriptomique a révélé une augmentation du taux de transcrits pour des gènes dont les produits interviennent dans la biosynthèse des acides gras membranaires saturés et insaturés lors d’un stress à l’alcool benzylique. Des approches physiologique, moléculaire et structurale ont permis de proposer un modèle décrivant l’action chronologique de Lo18 en lien avec ses deux activités de chaperon en réponse à un stress éthanol. Dès l’application du stress, Lo18 est fortement synthétisée et agit préférentiellement à la membrane sous une forme quaternaire simplifiée. O. oeni modifie alors sa composition en acides gras membranaires, affectant ainsi l’affinité de Lo18 pour la membrane ainsi que ses activités.Les résultats obtenus permettent non seulement, de mieux comprendre le fonctionnement et le rôle de Lo18 dans la réponse au stress de O. oeni mais aussi de mettre en exergue les mécanismes d’adaptation préservant l’intégrité de sa membrane cellulaire, élément essentiel dans la survie et la performance des ferments malolactiques dans le vin / Oenococcus oeni is a lactic acid bacterium which is able to perform malolactic fermentation in wine. The synthesis of the small heat-shock protein (sHsp) Lo18 is one of the mechanisms involved in O. oeni survival in wine. Lo18 possess a chaperone activity on both protein and lipid substrates. pH variations in the range 5-9 were used to modulated Lo18 oligomerization in vitro and indicated that oligomer plasticity is essential for its activities. Electron microscopy studies showed that Lo18 is organised in a double-ring of stacked octamers to form a 16-mer structure at pH 5. The dimer observed at basic pH is thought to be the building block leading to oligomerization.The adaptive response of O. oeni to stress fluidizing its cytoplasmic membrane was also investigated. A transcriptomic study indicated an increase of the transcript level of genes involved in biosynthesis of saturated and unsaturated membrane fatty acids during benzylalcohol stress. On the basis of physiological, molecular and structural approaches, a model describing the first steps of O. oeni response to ethanol stress was proposed. In the early steps of the stress, Lo18 is synthesised and addressed to the membrane under a simplified structure. During the course of adaptation to the presence of ethanol, changes of the phospholipids content occur. This affects Lo18 activities and its affinity for O. oeni membrane.The results allow us to better understand the activities and the role of Lo18 in stress response of O. oeni and highlight the mechanisms involved in the maintenance of membrane integrity, a crucial event for malolactic starter performance in wine

Neste trabalho foram estudados compósitos que apresentam como matriz polimérica uma blenda composta por polietileno de alta densidade (HDPE) e copolímero etileno acetato de vinila (EVA) e como nanocarga, silsesquioxano poliédrico oligomérico (POSS). Os compósitos foram processados em câmara de mistura fechada e caracterizados quanto às propriedades térmicas e morfológicas. Para a preparação dos compósitos foram variadas as concentrações dos componentes da blenda (0, 25, 50, 75 e 100%) e da nanocarga (0, 0,5, 1, 1,5, 2, 5 e 10%). Os resultados de processamento mostraram que o aumento da concentração de POSS na matriz polimérica provocou a agregação do mesmo na matriz polimérica. As análises de calorimetria diferencial de varredura e termogravimetria indicaram que o POSS não afetou as temperaturas de fusão, cristalização e degradação da matriz polimérica. Os resultados de raios X indicaram que a presença do EVA no compósito promoveu o aparecimento de domínios cristalinos em concentrações menores de POSS. A microscopia eletrônica de varredura indicou que as amostras com 1% de POSS apresentam distribuição homogênea na matriz polimérica. Por outro lado, ocorreu a formação de agregados nas amostras com 5% de POSS. Os valores de Tg obtidos por análise térmica dinâmico-mecânica indicaram que o POSS causou um efeito plastificante na fase HDPE e uma redução da mobilidade na fase EVA. Ocorreu um aumento nos valores de módulo de armazenamento com a incorporação de POSS na matriz polimérica. / Submitted by Marcelo Teixeira (mvteixeira@ucs.br) on 2014-05-22T19:03:21Z No. of bitstreams: 1 Dissertacao Patricia Scapini.pdf: 2020883 bytes, checksum: 2c7249d3915135dd5f3cba151cf459db (MD5) / Made available in DSpace on 2014-05-22T19:03:21Z (GMT). No. of bitstreams: 1 Dissertacao Patricia Scapini.pdf: 2020883 bytes, checksum: 2c7249d3915135dd5f3cba151cf459db (MD5) / In this study composites with a polymeric matrix comprising a blend of high density polyethylene (HDPE) and the copolymer ethylene vinyl acetate (EVA), and with polyhedral oligomeric silsesquioxane (POSS) as the nanoclay, were processed and characterized. The composites were processed in a closed mixing chamber and characterized in terms of their thermal and morphological properties. For the preparation of the composites the concentrations of the blend components (0, 25, 50, 75 and 100%) and of the nanoclay (0, 0.5, 1, 1.5, 2, 5 and 10%) were varied. The results of the processing showed that an increase in the POSS concentration in the polymeric matrix caused the aggregation of the system. The differential scanning calorimetry and thermogravimetry analyses indicated that the POSS did not affect the melt, crystallization and degradation temperatures of the polymeric matrix. The X-ray results indicated that the presence of EVA in the composite led to the appearance of crystalline domains at lower POSS concentrations. Scanning electron microscopy indicated that the samples with 1% of POSS have a homogeneous distribution in the polymeric matrix. However, the formation of aggregates occurred in samples with 5% of POSS. The Tg values obtained from the thermo dynamic mechanical analysis indicated that the POSS had a plasticizing effect on the HDPE phase and caused a reduction in the mobility of the EVA phase. There was an increase in the storage modulus values with the incorporation of POSS into the polymeric matrix.

Neste trabalho foram estudados compósitos que apresentam como matriz polimérica uma blenda composta por polietileno de alta densidade (HDPE) e copolímero etileno acetato de vinila (EVA) e como nanocarga, silsesquioxano poliédrico oligomérico (POSS). Os compósitos foram processados em câmara de mistura fechada e caracterizados quanto às propriedades térmicas e morfológicas. Para a preparação dos compósitos foram variadas as concentrações dos componentes da blenda (0, 25, 50, 75 e 100%) e da nanocarga (0, 0,5, 1, 1,5, 2, 5 e 10%). Os resultados de processamento mostraram que o aumento da concentração de POSS na matriz polimérica provocou a agregação do mesmo na matriz polimérica. As análises de calorimetria diferencial de varredura e termogravimetria indicaram que o POSS não afetou as temperaturas de fusão, cristalização e degradação da matriz polimérica. Os resultados de raios X indicaram que a presença do EVA no compósito promoveu o aparecimento de domínios cristalinos em concentrações menores de POSS. A microscopia eletrônica de varredura indicou que as amostras com 1% de POSS apresentam distribuição homogênea na matriz polimérica. Por outro lado, ocorreu a formação de agregados nas amostras com 5% de POSS. Os valores de Tg obtidos por análise térmica dinâmico-mecânica indicaram que o POSS causou um efeito plastificante na fase HDPE e uma redução da mobilidade na fase EVA. Ocorreu um aumento nos valores de módulo de armazenamento com a incorporação de POSS na matriz polimérica. / In this study composites with a polymeric matrix comprising a blend of high density polyethylene (HDPE) and the copolymer ethylene vinyl acetate (EVA), and with polyhedral oligomeric silsesquioxane (POSS) as the nanoclay, were processed and characterized. The composites were processed in a closed mixing chamber and characterized in terms of their thermal and morphological properties. For the preparation of the composites the concentrations of the blend components (0, 25, 50, 75 and 100%) and of the nanoclay (0, 0.5, 1, 1.5, 2, 5 and 10%) were varied. The results of the processing showed that an increase in the POSS concentration in the polymeric matrix caused the aggregation of the system. The differential scanning calorimetry and thermogravimetry analyses indicated that the POSS did not affect the melt, crystallization and degradation temperatures of the polymeric matrix. The X-ray results indicated that the presence of EVA in the composite led to the appearance of crystalline domains at lower POSS concentrations. Scanning electron microscopy indicated that the samples with 1% of POSS have a homogeneous distribution in the polymeric matrix. However, the formation of aggregates occurred in samples with 5% of POSS. The Tg values obtained from the thermo dynamic mechanical analysis indicated that the POSS had a plasticizing effect on the HDPE phase and caused a reduction in the mobility of the EVA phase. There was an increase in the storage modulus values with the incorporation of POSS into the polymeric matrix.

Les copolymères à blocs sont des matériaux très intéressants en raison de leur capacité à s’auto-organiser pour former des domaines de quelques dizaines de nanomètres. Cette organisation peut être mise à profit pour obtenir des matériaux hybrides organiques/inorganiques dans lesquels la phase inorganique peut être structurée dans un des domaines plutôt que répartie de façon aléatoire. Ceci peut conférer des propriétés particulières aux copolymères hybrides. Notre travail de thèse s’inscrit dans cette problématique. Des copolymères à blocs ont été modifiés soit par greffage en solution de molécules organiques/inorganiques du type POSS réactif (polyhedral oligomeric silsesquioxane), soit par mélange en solution ou à l’état fondu de POSS non réactif. Les copolymères triblocs considérés sont du type SBS (styrène-butadiène-styrène) et SEBS-g-MA (styrène-éthylène-butène-styrène greffé anhydride maléique). L’ensemble de ces copolymères a été caractérisé expérimentalement afin de déterminer leur morphologie et leur comportement thermo-mécanique. En parallèle une approche théorique a été proposée, basée sur la modélisation moléculaire de ces copolymères à l’échelle mésoscale. La méthode sélectionnée ‘Dissipative Particle Dynamics’ a permis de modéliser la morphologie de nos copolymères avec succès ainsi que celle de nos matériaux hybrides modifiés par les POSS. Ces derniers peuvent être dispersés à l’échelle moléculaire ou au contraire former des agrégats, selon le procédé de mise en œuvre et la structure chimique des POSS. / Experimental approaches and a modeling method have been carried out in parallele. The simulation method was used firstly to confirm the experimental results, and then will be applied to more complex nanocomposites. A series of hybrid systems based on triblock copolymer of polystyrene-butadiene-polystyrene (SBS) grafted with polyhedral oligomeric silsesquioxane(POSS) molecules with a dimethylsiloxy group (DMIPOSS) were synthesized by a hydrosilation method. The characteristics on incorporation of an unreactive POSS with constituent cyclohexyl (CyPOSS) in SBS matrix have been compared with above systems. The nanocomposites obtained were analyzed by atomic force microscopy, Transmission electron microscopy, X-ray scattering and dynamic mechanical.The same strategy has been carried out on polystyrene-b-poly (ethylene-co-butylene)-b-polystyrene-g-maleic anhydride (SEBS-g-MA) with other type of POSS. Dynamic particles dissipative (DPD) simulation methods in Materials Studio (Accelrys) were employed to study morphology of SB, SBS, SEBS and hybrid system. In this mesoscopic method, the polymer is simplified as a series of connecting beads which contains one or more monomer units. And all monomer units interact with each other following Newtonian Equations of Motion.