Indiana University-Purdue University Indianapolis (IUPUI) / For the past decade, many microfluidic paper-based analytical devices have been developed and used in different research fields. These devices are low-cost, portable, flexible, sterilizable, disposable, and easy to manufacture. The microfluidic paper-based analytical devices offer good alternatives to measurements and assays commonly performed in laboratories for analytical and clinical purposes, especially in diagnostics. In this work, we developed an electrochemical paper-based pH sensor. The determination of pH is essential in applications in areas as diverse as in the food industry, agriculture, health care or water treatment. The method presented in this work is an electroanalytical method that involves quantification of pH using stencil-painted graphite electrodes. Preliminary tests showed that pH can be determined on paper-based devices, thus indicating the presence of electroactive elements sensitive to pH on the surface of our electrodes (Chapter 4). Chemical modification of the electrode by adsorption with sodium carbonate and modification of the surface of the electrode was accomplished via: oxygen (ambient air) plasma treatment and pure oxygen plasma treatment. These treatments were to attempt to improve the definition of redox peaks on the CVs (Chapter 5). The changes made to the design of the paper-based device and the addition of a conditioning step improved the definition of the redox peaks on the CVs and increased the pH-sensing ability of our method (Chapter 6). The pH-sensing ability of our method was evaluated by testing solutions over a wide pH range. Adding sodium chloride to samples adjust the solution for accurate pH determination. The pH was successfully measured for solutions with values ranging from 1 to 13 and for artificial saliva samples prepared with pH values in the cavity-prone range (Chapter 7). This work offers a method that uses electroactive elements sensitive to pH on the surface of the PBD electrodes for pH-sensing.

Optical biosensors are desired for the monitoring of various biochemical markers, which are relevant indicators in the treatment and diagnosis of diseases. Specifically, luminescence sensors are favorable for optical interrogation since they are highly sensitive to analyte changes and may be implemented in lifetime or intensity-based systems. In order to develop particle-based fluorescent sensors, poly(2-hydroxyethylmethacrylate) (HEMA) microspheres have been fabricated via membrane emulsification and characterized to evaluate the emulsion method and the overall process of tailoring properties to synthesize spheres of specific mean sizes. A pH-sensitive indicator seminaphthorhodafluors-4F 5-(and-6)-carboxylic acid (SNARF) was immobilized within the microspheres, and resulting sensor particles were exposed to various pH buffers to obtain a pH calibration curve based on intensity measurements. PolyHEMA microparticles were fabricated in a systematic study with measured mean sizes ranging from 8-21 um. Optical and scanning electron microscopy images revealed the formation of spherical, porous particles, which were additionally stabilized with polymer coatings. The lowest coefficient of variation value achieved was 50%, indicating the inability to produce monodisperse particles due to the dispersity of pore sizes in the membrane. SNARF was immobilized within the polyHEMA spheres, and fluorescence was observed when exposing the sensors to different pH buffers on a fluorescence microscope. Ratiometric intensity measurements for the sensor particles were obtained on a spectrofluorometer while flowing pH buffers over the immobilized spheres in a reaction chamber. The peak intensity ratio of the microparticle sensors exhibited a change in 0.9 units when decreasing the pH from 8.4 to 5.5. In the future, these pH sensing particles may be implanted alongside glucose sensing materials in order to provide valuable pH information in understanding the immune response to specific biomaterials and sensing components.

Lumineszenzmessungen und Lumineszenz-Bildgebung spielen in den Biowissenschaften eine wichtige Rolle und ermöglichen den Nachweis und die Detektion von biomolekularen Wechselwirkungen und Analyten, die selbst keine intrinsische Farbe und / oder Lumineszenz aufweisen. Ein vielversprechender Ansatz ist die Verwendung von im Nahinfrarot (NIR) anregbaren, mehrfarbig emittierenden Aufkonversions-Nanokristallen (UCNPs) wie mit Yb3+ und Er3+ dotierten NaYF4-Nanopartikeln. Diese Nanopartikel können als Lumineszenzreporter oder Energiedonoren (Nanolampen) für die Anregung von Analyt-sensitiven Sonden benutzt werden. In dieser Arbeit, die den Aufbau eines selbstreferenzierten UCNP-basierten Sensors für die Ermittlung von pH-Werten als Ziel hatte, wurden beide Sensorkomponenten gezielt ausgewählt, synthetisiert und spektroskopisch charakterisiert. Dies beinhaltete i) UCNPs mit unterschiedlichen Größen, Partikelarchitekturen und Oberflächenfunktionalisierungen oder -beschichtungen und ii) Rosamin-Farbstoffe mit Absorptions- und Emissionseigenschaften, die für die gewünschte Kombination mit UCNPs geeignet sind. Des Weiteren wurde eine umfassende Untersuchung der chemischen Stabilität von unterschiedlich oberflächenfunktionalisierten und beschichteten UCNPs in biologisch relevanten Puffern durchgeführt. Für die schnelle Ermittlung der UCNP-Stabilität wurde eine einfache optische Überwachungsmethode zum Nachweis der Partikeldisintegationentwickelt, die die Abhängigkeit der UC-Lumineszenz und ihrer Lebensdauer von der Partikelgröße und Oberfläche ausnutzt. Im letzten Teil der Doktorarbeit wurden pH-Sensorfilme und Nanosensoren durch die Kombination der optimierten Yb3+, Er3+-co-dotierten UCNPs mit den pH-sensitiven Rosaminfarbstoffen als Energie-Akzeptoren unter Verwendung eines einfachen inneren Filters (Reabsorption) oder eines RET – Sensorkonzept konstruiert. / Luminescence sensing and imaging play an important role in the life sciences, enabling the detection and monitoring of biomolecular interactions and molecular targets that have no intrinsic colour and/or luminescence even in complex biological samples. A very promising approach presents the utilization of near-infrared (NIR) excitable multi-colour emissive upconversion nanocrystals (UCNPs) like NaYF4 nanoparticles doped with Yb3+ and Er3+ as luminescent reporters and as energy donors or “nanolamps” for the excitation of analyte-responsive probes. In this work, aiming at the design of self-referenced UCNP-based sensors for pH, both sensor components were rationally designed, synthesized, and spectroscopically characterized. This included i) UCNPs with different sizes, architectures, and surface chemistries or coatings and ii) rosamine dyes with absorption and emission properties adapted to the UC emission of the NaYF4: Yb3+, Er3+-doped UCNPs. Additionally, an extensive study of the chemical stability of differently surface functionalized and coated UCNPs in biologically relevant buffers was performed. To simplify stability monitoring, an optical monitoring method was developed for the detection of particle disintegration utilizing the size and environment dependence of the UC emission intensity and decay kinetics. Finally, pH sensor films and nanosensors were constructed by combining the initially optimized Yb3+, Er3+ co-doped UCNPs with pH-responsive rosamine dyes acting as energy acceptors utilizing a simple inner filter (reabsorption)- and a RET-based sensor concept.

Les fonctions organiques du corps humain sont liées à des constants biologiques. Variations de ces constantes induisent divers états pathologiques. Parmi ces constantes, le pH constitue le cœur de ces travaux de thèse. Chez les êtres vivants, les fonctions biologiques dépendent de constant acides ou alcalines. En fait, l’action d’une protéine dépend du pH du milieu environnant. Une valeur inadéquate du pH rend les protéines inactives ce qui est délétère pour l’organisme. Il existe donc un besoin pour des capteurs de pH qui puissant être utilisés dans le corps humain pour des applications cliniques (échelle macroscopique), sur des cellules en culture pour des recherches en biologie (échelle mesoscopique) et pour étudier les échanges ioniques au niveau des membranes cellulaires pour des travaux plus fondamentaux (échelle microscopique). Parmi le large éventail de technologies potentiellement candidates pour ces applications, la mesure de pH par fibre optique exploitant la fluorescence permet d’être adaptée aux trois échelles dimensionnelles susnommées. Ce manuscrit de thèse adresse des contraintes par l’étude de capteurs fluorescents à fibre optique utilisant deux types d’indicateur de pH: les SNARF et la fluorescéine. En parallèle de ces développements expérimentaux, des descriptions mathématiques des propriétés de fluorescence de ces deux indicateurs sont proposées. Ces descriptions permettent de progresser vers une mesure du pH sans calibration / Organic functions of the human body are linked to biological constants. Variations of these constants induce pathological troubles. Among these constants, the pH is the central subject of this PhD work. In living beings, biological functions are related to either acid or alkaline constants. Indeed, the action of a protein depends on the surrounding pH. An inadequate value of the pH makes the proteins non active which is deleterious for the organism. There exist a need for pH sensors which can be used in the human body for clinical applications (macroscopic scale), on cells in culture for biology researches (mesoscopic scale) or at a cell membrane level for more fundamental studies (microscopic scale). Among the wide range of technologies potentially useful for these applications, fiber optic fluorescence pH sensing offers the possibility to be adapted to the three above mentioned dimensional scales. This PhD dissertation addresses these constraints by studying fluorescence fiber optics pH sensors using two kind of pH indicators: SNARF and fluorescein. Together with these experimental studies, mathematical descriptions of the fluorescence properties of these indicators are proposed. They allow progressing towards calibration free pH sensing.

The process of respiration is a pattern of spontaneity and automatic motor control that originate in the brainstem. The mechanism by which the brainstem detects CO2 is termed central CO2 chemoreception (CCR). Since the early 1960’s there have been tremendous efforts placed on identification of central CO2 chemoreceptors (molecules that detect CO2). Even with these efforts, what a central CO2 chemoreceptor looks like remain unknown. To test the hypothesis that inward rectifier K+ (Kir) channels are CO2 sensing molecules in CCR, a series of experiments were carried out. 1) The first question asked was whether the Kir4.1-Kir5.1 channel is expressed in brainstem chemosensitive nuclei. Immunocytochemistry was performed on transverse medullary and pontine sections using antibodies raised against Kir4.1 and Kir5.1. Positive immunoassays for both Kir4.1 and Kir5.1 subunits were found in CO2 chemosensitive neurons. In the LC the Kir4.1 and Kir5.1 were co-expressed with the neurokinin-1 receptor that is the natural receptor for substance P. 2) The second question asked was whether the Kir4.1-Kir5.1 channel is subject to modulation by neurotransmitters critical for respiratory control. My studies demonstrated that indeed the Kir4.1-Kir5.1 channel is subject to modulation by substance P, serotonin and thyrotropin releasing hormone. 3) I performed studies to demonstrate the intracellular signaling system underlying the Kir4.1-Kir5.1 channel modulation by these neurotransmitters. The modulation by all three neurotransmitters was dependent upon the activation of protein kinase C (PKC). The Kir4.1-Kir5.1 but not the Kir4.1 channel was modulated by PKC. Both the Kir4.1 and Kir5.1 subunits can be phosphorylated by PKC in vitro. However, systematic mutational analysis failed to reveal the phosphorylation site. 4) The fourth question asked was whether Kir channels share a common pH gating mechanism that can be identified. Experiments were performed to understand the gating of the Kir6.2+SUR1 channel as specific sites for ligand binding and gating have been demonstrated. I identified a functional gate that was shared by multiple ligands that is Phe168 in the Kir6.2. Other Kir channels appear to share a similar gating mechanism. Taken together, these studies demonstrate the modulation of Kir channels in central CO2 chemoreception.