This diploma thesis is focused on the determination of distribution a surfactant at phase separation in polymer-surfactant system. Sodium hyaluronate of three molecular weights was chosen as a polymer, CTAB was used as a surfactant. The experiments were performed in an environment of 0,15 M NaCl. The measurement of the CTAB concentration in samples was based on the formation of coloured complexes of CTAB and picric acid in chloroform. UV-VIS spectroscopy was used for the detection of these complexes. The content of CTAB was determined in four gels of different composition (2% Hya + 200 mM CTAB, 2 % Hya + 50 mM CTAB, 0,5 % Hya + 200 mM CTAB, 0,5 % Hya + 50 mM CTAB). All gels were gradually washed five times with 0,15 M NaCl. The content of CTAB was determined for newly prepared gels and for gels after 2 and 4 months since the preparation. Initial concentrations of CTAB and hyaluronan have greater influence on the distribution of CTAB after phase separation, than the molecular weight of hyaluronan. The content of CTAB in newly prepared gels and after 4 months since preparation is very similar and demonstrates the stability of the system.

This diploma thesis is concentrated on the interactions between polyelectrolyte (hyaluronan) and cationic surfactant (CTAB). The experiments were performed in an aqueous solution and in an environment of physiological ionic strength (0,15mmoldm-3 NaCl). The determination of the surfactant concentration in solutions was based on the formation of colored complexes of CTAB and picric acid in chloroform. The concentrations of surfactant were measured by UV-VIS spectroscopy. The stability of CTAB+HyA was examined by a dialysis method. The results showed that, regardless of the environment, the presence of HyA in solution reduces the number of free molecules of CTAB which can be determined in the sample. It has been proved that there is an interaction between HyA and surfactant and that CTAB has greater affinity for HyA then for the picric acid. The stability of CTAB+HyA was determined by dialysis of 120 hours. After that time, the concentrations of the retentate and permeate were settled. The results showed that in the membrane remains a certain amount of CTAB bounded to hyaluronan. The system can be suitable for the preparation of targeted carriers of biologically active substances.

Nature has always remained a constant source of inspiration for chemists for synthesizing natural products, mimicking enzymatic reactions or to construct molecular architectures resembling biological assemblies. With the rapid growth of ‘Supramolecular Chemistry’ along with the advancement of the synthetic methodologies, molecular systems with brand new complexities have been synthesized, alongside the efficacy of weak, reversible non-covalent interactions have also been extensively explored. A number of such forces including hydrogen bonding, solvophobic effect, dynamic covalent interactions and metal-ligand coordination have been exploited to assemble the molecular building blocks and stitch them together to construct discrete ‘self-assembled’ architectures integrated with desired functionalities. Metal-ligand coordination driven self-assembly certainly evolved as one of the most successful approaches for the construction of discrete supramolecular architectures during last two and half decades. The high directionality and reversible nature of certain metal-ligand bonds allow the pre-designing of sophisticated architectures which can be successfully obtained by ‘error corrections’ via a thermodynamically controlled self-assembly process. Numerous aesthetically elegant two dimensional (2D) and three dimensional (3D) metallosupramolecular architectures have been constructed which have been studied for various potential applications including guest encapsulation, catalysis, sensing, optoelectronics, drug delivery, protection of reactive species etc. Construction of such molecular architectures uses symmetric and rigid building blocks which strictly preserves their geometrical coding and thus finally determines the fate of the self-assembly. Pyridyl-based donors have been extensively used due to their well-behaved coordination with transition metal ions. Interestingly, imidazole based donors remained almost unexplored for such purpose mainly due to the rotational flexibility of imidazole moieties owing to the lack of -electron delocalization with the aromatic backbone, which makes pre-designing an architecture extremely difficult. However, this unpredictability can lead to the formation of unprecedented molecular architectures. Furthermore, the conventional rigid ‘acceptors’ used in the ‘directional bonding approach’ always results in the formation of rigid assemblies, which cannot be utilized for the construction of smart molecular machine based applications. In this context, incorporation of restricted rigidity in the building blocks can be a convenient approach to construct versatile and flexible supramolecular architectures. Although flexible donors are quite common in coordination-driven self-assembly, the use of flexible metal acceptor is scarcely Highly symmetric spherical assemblies of square planer Pd(II) and Pt(II) ions are one of the most extensively studied metallosupramolecular architectures owing to their topological similarity with the spherical virus capsids. Unfortunately, none of the reported molecular spheres are soluble in water which restricts their applications in aqueous media. On the other hand, most of the metallosupramolecular architectures cannot be used for redox based applications as the oxidation state of the associated metal ions must be kept unaltered. Although, assemblies constructed mainly by the ferrocene containing acceptors are shown to be exhibiting redox property, the donor inherited redox active metallosupramolecular systems are extremely rare. Discrete 3D metallosupramolecular cages have been extensively studied as synthetic hosts where the hydrophobic pockets have been utilized as safe shelter for reactive species, for catalyzing chemical transformations, tuning electronic and optical properties of guest molecules, as delivery vehicle for drug molecules etc. However, a major drawback of many such 3D cages is associated with their closed-shell topology, where the large cavities are accessible though relatively much smaller apertures which prevent larger guest molecules to enter inside. So, an interesting finding in this field would be to construct molecular hosts with larger apertures. Picric acid (PA) is a strong organic acid and like many other polynitroaromatic compounds, it is a powerful explosive. In addition, it has large scale industrial application for the synthesis of dyes and pharmaceuticals. However, PA has potential health hazards and it is a water pollutant owing to its high aqueous solubility. Thus, the development of selective receptors which can efficiently interact with PA and detect it at very lower concentration is an appealing field of research. Chapter 1 briefly discusses the history of supramolecular chemistry and the concept of ‘self-assembly’ along with the several synthetic methodologies for the construction of discrete supramolecular architectures. It also includes a brief discussion on the various design approaches to construct 2D and 3D molecular architectures by metal-ligand coordination which is followed by an account on some of the important applications of such metallosupramolecular architectures. At the end, a small introduction on the fluorescence-based detection techniques for PA has also been included. Chapter 2A accounts for the exploration of two linearly substituted benzene bisimidazole donors L1 and L2 for coordination-driven self-assembly. L1 and L2 possesses different ‘natural’ donor angles as the imidazole moieties in L2 are twisted heavily with respect to the phenyl plane due to the steric hindrance exerted by the methyl groups. Interestingly, while the self-assembly of L1 with [cis-(tmeda)Pd(NO3)2] (tmeda = N,N,Nꞌ,Nꞌ-tetramethylethane-1,2-diamine) exclusively formed a [3+3] molecular triangle, the self-assembly of L2 yielded a [4+4] molecular square as the major product with the same acceptor. In addition, similar treatment with the analogous Pt(II) acceptor resulted mixtures of [3+3] and [4+4] assemblies in both cases; however, the [3+3] assembly was the major product in case of L2. These contradictory product distributions in case of L2 with analogous Pd(II) and Pt(II) acceptors could be corroborated by the delicate balance between the entropic and enthalpic contributions. Scheme 1. Self-assembly of L1/L2 with [cis-(tmeda)Pd(NO3)2] and [cis-(tmeda)Pt(NO3)2], respectively. Furthermore, the reactions of L1 and L2 with a 0º bisplatinum acceptor, viz. AntPt yielded the expected [2+2] macrocycles (8 and 9), respectively. However, the interesting observations Scheme 2. Self-assemblies of L1 and L2 with the 0º bisplatinum acceptor AntPt. obtained from the variable temperature NMR studies suggested the existence of a mixture of inter-convertible conformational isomeric structures of 9. Chapter 2B describes the synthesis of a novel semi-rigid bisplatinum acceptor bisPt-NO3 based on benzil backbone for the construction of flexible metallamacrocycles. The benzil group was selected due to its unique rotational flexibility along the benzyl C-C bond which can generate a wide range of bite angles to make it compatible with the variety of donors of diverse shapes and sizes. The acceptor was successfully self-assembled with four different bisimidazole donors (L1-L4) to yield corresponding [2+2] metallamacrocycles (M1-M4) which were characterized by multinuclear NMR and ESI-MS spectrometry; and their structures were elucidated by semi-empirical geometry optimizations. Scheme 3. Self-assembly of [2+2] metallamacrocycles M1-M4 by a semi-rigid bisplatinum acceptor bisPt-NO3. Chapter 3 discusses the synthesis of the very first example of a water soluble molecular sphere MC-1 by the self-assembly of square planar Pd(II) ions with a flexible cationic tritopic donor La(NO3)3 containing 4,4-bispyridyl arms. The structural flexibility of La(NO3)3 makes it capable of binding with metal ions in its syn- or anti-conformations which was also experimentally observed in the structures of the three newly synthesized coordination polymers, viz. Ag-CP, Zn-CP and Cd-CP constructed by using La(NO3)3 as (co)ligand. Finally, the 4:3 self-assembly of [La(NO3)3] and Pd(NO3)2 in aqueous media produced the desired M6L8 type Scheme 4. Self-assembly of the water soluble molecular dice MC-1 from the tricationic tritopic donor La(NO3)3. molecular sphere- MC-1, which contain 36+ overall charges. The compound could be easily solubilized in water after isolation as solid by simple stirring at room temperature. Single crystal X-ray diffraction analysis (SCXRD) revealed the ‘dice’-shaped architecture of MC-1 where the eight faces are occupied by the coordinated Pd2+ ions and the bispyridyl arms and the vertices are occupied by mesityl moieties. MC-1 is stable in aqueous media, however disintegrates in DMSO, as observed by variable temperature NMR experiments. In addition, MC-1 also produced ligand inherited redox signals in cyclic voltammetry experiments. Chapter 4 describes the synthesis of a novel non-symmetric tetraimidazole donor L based on carbazole backbone. The complexity of the donor is associated with the allowed free rotation of the imidazole moieties along with the non-symmetric nature of the carbazole backbone which make L a very unusual donor for coordination-driven self-assembly. The crystal structure of L showed that the presence of the N-Me group caused a greater twisting of the nearby imidazole moieties with respect to the other set of imidazole moieties. The self-assembly of L with [cis-(en)Pd(NO3)2] (en = ethane-1,2-diamine) yielded a mixture of M4L8 and M6L12 type self-assembled products, as evidenced from the ESI-MS spectrometry. However, the DOSY NMR spectra of the product showed a single diffusion coefficient for all the peaks, indicating that both type of assemblies have similar size and hence suggested the formation of a tetrafacial barrel and a cubic architecture. A similar self-assembly of L with [cis-(tmeda)Pd(NO3)2] also produced a water soluble product. ESI-MS spectra in this case only confirmed the formation of a M4L8 assembly- MB-1. SCXRD analysis of the coronene encapsulated complex of MB-1 gave more insights on the sophisticated non-symmetric tetrafacial barrel architecture of MB-1 with large Scheme 5. Construction of the water soluble molecular barrel MB-1 by the self-assembly of a non-symmetric tetraimidazole donor L. rectangular apertures. The centrosymmetric molecule can encapsulate two aromatic guest molecules inside its hydrophobic cavity and was found to be efficiently encapsulating polyaromatic hydrocarbons (PAHs) in aqueous media. In addition, MB-1 has been successfully exploited to carry water insoluble perylene molecule inside HeLa cells for fluorescence imaging purpose without showing significant toxicity. L also formed a water insoluble tetrafacial barrel (MB-2) by self-assembly with [cis-(dppf)Pd(OTf)] (dppf=diphenylphosphino ferrocene) which interestingly has a symmetrical architecture, as evidenced from the SCXRD analysis. The formation of the symmetrical barrel is driven by the steric hindrance between the bulky phenyl groups of the nearby dppf moieties. Chapter 5 reports the study of interactions between picric acid (PA) with a few newly synthesized fluorescent imidazolium salts (S1-S3). The fluorescence titration study of the positively charged receptors with PA showed rapid decrease of the corresponding fluorescence intensities upon gradual addition of PA. The Stern-Volmer plots suggested the involvement of both static and dynamic quenching mechanisms which was further supported by fluorescence lifetime measurements, NMR and UV-Vis spectroscopic analyses. The values of the Stern-Volmer constants (Ksv) reflected strong receptor-PA binding. The quenching efficiency calculations in the presence of several other analytes proved that the receptors are highly selective for PA in both aqueous and non-aqueous media. The mode of interactions in solid state was investigated by the crystal structure analysis of the [S1PA] complex. 1H NMR spectra of the same complex indicated strong interaction between the imidazolium moieties of the receptor Scheme 6. The fluorescent imidazolium salts based receptors S1-S3 and the florescence titration plot for S1 with PA. Inset: the solutions of S1 and (S1+PA) in DMSO under UV light. with PA in solution; however, no significant interaction of PA with the anthracene moieties was observed in solution as we well as in the solid state. Also the quenching efficiencies and the Ksv values were correlated with the positive charge(s) present on the receptors with the help of two newly synthesized mono-positive receptors S4 and S5.

Pyrazoloanthrone and its analogues form the central core of the thesis and the work is focused on the evaluation of chemical and biological applications of pyrazoloanthrones. Selective and sensitive detection of biologically, environmentally and industrially important molecular species such as fluoride, cyanide and picric acid by using pyrazoloanthrones as sensors form the first part while the second part deals with selective and specific kinase inhibition by pyrazoloanthrones to moderate inflammation associated disorders like septic shock. All the investigations are based on extensive crystallographic studies of the participating molecules. Chapter 1 provides a brief review on the history and biological importance of 1,9-pyrazoloanthrones. The potential of these molecules as probes in sensor chemistry and protein kinase inhibition is envisaged. A short account of the techniques employed for the investigations along with a preamble is presented. Chapter 2 is divided into two parts. Part A deals with the design of a colorimetric and “turn-on” fluorescent chemosensor based on 1,9-pyrazoloanthrone specifically for cyanide and fluoride ion detection. A remarkable solid state reaction indicated by the development of intense red color occurs when crystals of tetrabutylammonium cyanide/fluoride are brought in physical contact with 1,9¬pyrazoloanthrone resulting in corresponding molecular complexes (Figure 1). X-ray crystal structures of these complexes and also of 1,9-pyrazoloanthrone have been determined and the ion sensing activity has been substantiated on the basis of spectroscopic (absorption, fluorescence and NMR) and structural analyses. The crystal structure of the parent compound exhibits a disorder as a consequence of tautomerism and the disorder gets carried on to the complexes as well with even the cyanide and the fluoride ions showing partial occupancy sites. The presence of the –NH group and associated intramolecular charge transfer upon complex formation is attributed to the extreme sensitivity of 1,9-pyrazoloanthrone for cyanide and fluoride (detection limits of 0.2 ppb and 2 ppb) ions respectively. Figure 1. Development of intense red color during the solid state reaction (shown on left) and the turn on fluorescence behavior (shown to the right) Part B demonstrates the utilization of electron rich N-alkyl substituted pyrazoloanthrones to design sensors for detecting explosive and electron deficient nitro aromatics such as picric acid (PA). The N-alkyl derivative of 1,9-pyrazoloanthrone has been synthesized, characterized by single crystal X-ray diffraction studies and evaluated as a potent sensor for picric acid. NMR and fluorescence lifetime measurements validate that the fluorescence quenching of sensor compound by PA (Figure 2) as due to the formation of excited state charge-transfer complex resulting in dynamic quenching. Figure 2. Fluorescence quenching measurements demonstrating the dynamic quenching in the charge transfer complex. Chapter 3 deals with the biological evaluation of 1,9-pyrazoloanthrone and its alkyl derivatives towards the inhibition of a decisive protein kinase called c-Jun N-terminal Kinase (JNK), an important member of MAP kinase family. JNK controls crucial cellular processes like apoptosis and cell proliferation and is implicated in disorders associated with inflammation such as septic shock, arthritis, inflammatory bowel disease, etc. Therapeutic inhibition of JNK activity by small molecules has proven to be advantageous in the treatment of diseases coupled with derailed inflammation. In this context, it is already established that 1,9-pyrazoloanthrone (SP600125) effectively and selectively inhibits JNK at concentrations beyond 10 M. A series of alkyl isomers of pyrazoloanthrone derivatives have been synthesized to evaluate the structural implications of inhibition and to elevate both selectivity and sensitivity at lower concentrations. The crystal structures of these isomers have been characterized and their utility as inhibitors has been tested for their in vitro inhibitory activity over c-Jun N-terminal kinase (JNK). The minimum inhibitory concentrations required by these molecules to inhibit JNK was found to be lesser as compared to 1,9-pyrazoloanthrone (<5 µM; Figure 3). Critically, it turns out that among the various inhibitors synthesized, the lead candidates SPP1 and SPB1 display specific inhibition of JNK among other LPS activated MAP kinases like ERK1/2 and p38. These results suggest that N-alkyl (propyl and butyl) bearing pyrazoloanthrone scaffolds provide promising therapeutic inhibitors for JNK in regulating inflammation associated disorders. Figure 3. Inhibition of JNK in macrophages by the SPP1 and SPB1 compared to the known SP600125. Inspired by the results reported in the previous chapter, Chapter 4 is devoted to the generation of a library of compounds based on SPP1 and SPB1 with a purpose to design inhibitors of JNK which perform at the lowest possible concentrations and the consequent evaluation of their potential on endotoxin induced septic shock. Severe sepsis or septic shock is one of the rising causes for mortality worldwide representing nearly 10% of intensive care unit admissions. Susceptibility to sepsis is identified to be mediated by innate pattern recognition receptors and responsive signaling pathways of the host. The c-Jun N-terminal Kinase (JNK)-mediated signaling events play critical role in bacterial infection triggered multi-organ failure, cardiac dysfunction and mortality. Figure 4. Two selected molecules for specific inhibition studies of JNK at lower concentrations. It is demonstrated that alkyl and halogen substitution on the periphery of anthrapyrazolone increases the binding potency of the inhibitors specifically towards JNK. Based on the results from both in vitro with macrophages and in vivo with the mouse model of septicemia, the potential role of two selected molecules D1 and D2 (Figure 4) in regulating endotoxin induced inflammation is firmly established. Further, it is demonstrated that hydrophobic and hydrophilic interactions generated by these small molecules effectively block endotoxin-induced inflammatory genes expression in in vitro and septic shock in vivo, in a mouse model, with remarkable efficacies. Altogether, the in vitro as well as the in vivo data clearly potentiates the selective inhibitory capacity of small molecule inhibitors like D1 and D2 which can facilitate the treatment of current inflammatory disorders when used in combination with the available drugs having varied efficacies. The results rationalize the significance of the diversity oriented synthesis of small molecules for selective inhibition of JNK and their potential in the treatment of severe sepsis.

This Diploma Thesis is focused on study of electrochemical behavior of 2,4,6-trinitrotoluene (TNT) and 2,4,6-trinitrophenol (picric acid) on finding the optimum conditions for their determination using direct current voltammetry (DCV) and differential pulse voltammetry (DPV) at a mercury meniscus modified silver solid amalgam electrode (m-AgSAE) in the solution of Britton-Robinson (BR) and on finding of the limit of quantification (LQ) for these substances. Practical applicability of the newly developed methods was verified on direct determination of TNT and picric acid in model samples of drinking and river water. Moreover, the electrochemical behaviors of TNT and picric acid was studied using cyclic voltammetry (CV). Optimum medium for the determination of TNT at m-AgSAE was: methanol-BR buffer pH 4.0 (1:9). Upon the DCV it is proper to apply regeneration potentials Ereg,1= 0 mV and Ereg,2= -1100 mV and upon the DPV was apply regeneration potentials Ereg,1= 0 mV and Ereg,2= -600 mV were applied. The concentration dependence of the peak current was found to be linear for both techniques over the concentration range of 1·10-6 -1·10-4 mol/l with LQ of 0.54 µmol/l (for DCV) and 0.46 µmol/l (for DPV). The method developed for the determination of TNT were verified on the model samples of drinking...

In the last few years, considerable efforts have been given to develop sensitive and effective sensors for explosive materials and to generate systems which exhibit high luminescence in both solution and solid-state. The increasing number of terrorist activities around the world have prompted scientists to design effective ways to detect and disarm even the trace amount of explosives. The nitroaromatics (NACs) are the common constituents of most of the explosives due to high explosive velocity and ease of availability. The NACs were extensively used as the main constituents in landmines until World War II. Apart from their explosive behavior, the NACs are well-known environmental pollutants. The industrial waste and the leakages from unexploded landmines are the major contributors towards the soil and ground water contamination. Presently for effective detection of trace amount of explosives, skilled canines and metal based detectors are commonly used. The canines are trained for a specific type of explosives which limit their ability to detect different types of substrates. The chemical sensors that work on the principle of colorimetric and/or fluorimetric detection techniques have emerged as suitable alternative due to cheap production cost, portability and sensitivity. Different types of materials including conjugated polymers, metal-organic frameworks (MOFs), and quantum-dots have been reported as efficient chemosensors for NACs. However, poor solubility in the common organic solvents, low solid-state fluorescence, very high molecular weight and lack of signal amplification have restricted the application of these material for in-field testing. Renewed interests have been invested in small molecule based systems; and metal-organic discrete molecular architectures due to precise control over their photophysical properties and the supramolecular interaction among neighboring molecules that facilitates energy migration among the molecular backbone. On the other hand, recently post-synthetic modification of different molecular systems including MOFs and polymers has emerged as a potential technique to incorporate desired functional groups into the system and to tune their properties with the retention of basic structures. Reports on the post-synthetic modification of discrete metal-organic architectures are rare due to the delicate nature of the metal-organic bonds that ruptures on mild environmental changes. Therefore, post-synthetic functionalization of discrete molecular systems using mild reaction conditions will open up a myriad of possibilities to generate new systems with desired characteristics. Chapter 1 of the thesis will briefly discuss the history of different explosive materials including different detection methodologies that are widely used. It will also include a brief discussion on different small molecular systems with high solid-state luminescence. In Chapter 2, design and synthesis of triphenylamine-based two Platinum(Pt)(II) molecules functionalized with carboxylic acid and ester groups including their organic analogues have been discussed. The triphenylamine core was chosen due its unique non-planarity and luminescence. On the other hand, Pt(II) center was incorporated to increase intermolecular spacing in solid-state that can induce high luminescence. Scheme 1. Schematic representation of fluorescence quenching using small molecules. All the four molecules were found to be highly sensitive towards NACs including picric acid and dinitrophenol. Although the molecules exhibited similar sensitivity in solution, the carboxylic acid analogues demonstrated superior sensitivity in solid-state. Careful observation of the crystal structures of the systems revealed the acid analogues were oriented in a 2-D grid-like pattern that facilitated energy migration among neighboring molecules (Scheme 1.). Chapter 3 describes design, synthesis, and NACs sensing behavior of anthracene-based four purely organic small molecules. The molecules exhibited high selectivity towards picric acid only. All the molecules were found to be highly emissive in both solution and solid-state due to the vinylanthracene backbone (Scheme 2.). Scheme 2. Schematic representation of fluorescence quenching and solid-state sensing behavior. Chapter 4 discusses the strategy to develop mechano-fluorochromic and AIE active triphenylamine-based Pt(II) complex and its organic analogue. The twisted triphenylamine backbone restricted molecular close packing in solid-state; and weak C-H-- interactions were utilized to hinder the motion of the phenyl rings. As a result, the molecules were highly emissive in solid-state. Grinding disrupted the intermolecular interactions and thus mechano-fluorochromic behavior was observed. Due to twisted backbone, the molecules were also found to be AIE active. Both the systems containing terminal aldehyde groups were finally utilized for selective detection of biomolecule cysteine (Scheme 3.). Scheme 3. Mechano-fluorochromic and AIE behavior of the triphenylamine based Pt(II) complex. In Chapter 5 vinylanthracene-based linear donor was used in combination with carbazole-based 90° and triphenylamine-based 120° Pt(II) acceptors to generate (4+4) and (6+6) molecular squares and hexagons, respectively. The vinylanthracene backbone imparts high solution and solid-state luminescence to the system as well as made them AIE active. The molecules were further investigated for the solution and solid-state sensing for NACs and found to be effective for trinitrotoluene (TNT) and dinitrotoluene (DNT) (Scheme 4.). Scheme 4. Schematic representation of AIE active molecular square and its NACs sensing. Chapter 6 describes the formation of Pd3 self-assembled molecular trinuclear barrels containing triphenylamine imidazole donors and Pd(II) acceptors. Using Knoevenagel condensation the aldehyde group present in the barrel was post-synthetically functionalized with Meldrum’s acid. From spectroscopic characterization, it was proved that the structural integrity remained intact after the post-modification treatment (Scheme 6.). Surprisingly, pre-synthetic modification of the donor alone with Meldrum’s acid followed by self-assembly treatment with the Pd(II) ion did not yield trigonal barrel 6.8. Scheme 6. Post-synthetic functionalization of trinuclear barrels using Knoevenagel condensation.(For colour pictures pl see the abstract pdf file)