The diversity of microorganisms and the influence of their enzymatic activities in soil are critical to the maintenance of good soil health. Changes in these parameters may be the earliest predictors of soil quality changes, potentially indicating anthropogenic influences. The goal of this study was to investigate the soil microbial diversity and function of grasslands along an urbanization gradient. Soil samples were collected in the Potchefstroom municipal area, South Africa, at specific sites. Sampling sites were described as urban, suburban and rural - according to the V-I-S (Vegetation-Impervious surface-Soil) model of Ridd (1995). Soil samples were collected over a warmer, wet season (May) and a colder, dry season (August) over two years (2007 and 2008). Collected soil samples were characterised using certain physical and chemical parameters. Plant species composition and abundance were determined at each site, along with basic site data (soil compaction, percentage ground cover, percentage bare ground, percentage organic material present). The Shannon-Weaver diversity index was used to calculate biodiversity values for all the investigated sites regarding collected plant species composition. The microbial component of the soil was quantified and characterized using culture-dependent and culture-independent techniques. Culture-dependent techniques included the investigation of the aerobic heterotrophic bacteria and fungi. Organisms were plated out on different media, and the bacterial component was broadly grouped using morphology. Dominant organisms were identified by sequencing of PCR amplified 16S ribosomal DNA fragments. Shannon-Weaver index for bacterial diversity was determined for each of the sites. Denaturing gradient gel electrophoresis (DGGE) profiling of selected bacterial communities were also conducted. Microbial community function was determined using enzyme assays of five major groups of enzymes, namely (i) dehydrogenase; (ii) β-glucosidase; (iii) acid phosphatase, (iv) alkaline phosphatase and (v) urease. Plant species results were then brought into context with microbiological diversity and functionality results using multivariate statistics. Physical and chemical parameters of the collected soil samples revealed patterns present along the urbanization gradient. The pH values were mostly higher in the sub-urban and urban sites than in the rural sites. Electrical conductivity values were generally highest in the sub-urban sites. Plant species composition revealed trends along the urbanization gradient. Ordinations clearly grouped the plant species into rural, sub-urban and urban groups regarding plant species composition. Rural sites had the highest number of plant species. Shannon-Weaver values regarding the plant diversity supported the plant species composition data indicating higher plant diversity in the rural areas, followed by the sub-urban and the urban areas. Plant structural data indicated that forbs were most numerous in the rural sites, and less so in the urban sites. Higher average aerobic heterotrophic bacterial levels were present in the urban soil samples. The bacterial levels were lower in the sub-urban and rural soil samples. Subsequent identification of the dominant bacteria in the soil samples revealed organisms of the genus Bacillus dominated the aerobic heterotrophic bacterial communities in the soil samples. Bacillus species dominated the soil samples along the urbanization gradient. Shannon-Weaver indices based on culture-dependent methods indicated that urban sites had the highest biodiversity. These results could have been exaggerated, because of an overestimation of the number of bacterial morphotypes present in samples. Fungal levels were higher in the soil from samples collected at the rural samples sites. The culture-independent method (DGGE) was not optimized and inconclusive results were obtained. Enzyme assays revealed that potential dehydrogenase, β-glucosidase and urease activity followed a trend along the urbanization gradient, with urban samples registering the highest values and rural sites the lowest. Enzymes involved in carbohydrate catabolism (β-glucosidase and dehydrogenase) registered significantly higher potential activity in urban sites than the sub-urban and rural sites. The results could indicate that urban sites have the potential to lose carbon at higher rates than the rural sites. This aspect may need further investigation. Higher potential urease activity could indicate higher N-cycling in the urban soil environment. Ordination results for soil-, plant- and microbial diversity as well as microbial functionality indicated certain trends along the urbanization gradient. Plant species composition and structure data indicated that urbanization has a definite effect on the plant communities in the urban ecosystem. Results regarding aerobic heterotrophic bacteria populations and potential enzyme activity of the dehydrogenase, β-glucosidase (both active in the carbon cycle) and urease (active in the nitrogen cycle) illustrated clear trends along the urbanization gradient. In conclusion, results indicated that urbanization has an effect on plant species composition, and the population and function of aerobic heterotrophic bacteria and the fungal population. Furthermore, this study demonstrated the potential of using microbial diversity and activity as tools to investigate carbon utilization and storage along an urban-rural gradient. / MSc (Environmental Sciences), North-West University, Potchefstroom Campus, 2011

The diversity of microorganisms and the influence of their enzymatic activities in soil are critical to the maintenance of good soil health. Changes in these parameters may be the earliest predictors of soil quality changes, potentially indicating anthropogenic influences. The goal of this study was to investigate the soil microbial diversity and function of grasslands along an urbanization gradient. Soil samples were collected in the Potchefstroom municipal area, South Africa, at specific sites. Sampling sites were described as urban, suburban and rural - according to the V-I-S (Vegetation-Impervious surface-Soil) model of Ridd (1995). Soil samples were collected over a warmer, wet season (May) and a colder, dry season (August) over two years (2007 and 2008). Collected soil samples were characterised using certain physical and chemical parameters. Plant species composition and abundance were determined at each site, along with basic site data (soil compaction, percentage ground cover, percentage bare ground, percentage organic material present). The Shannon-Weaver diversity index was used to calculate biodiversity values for all the investigated sites regarding collected plant species composition. The microbial component of the soil was quantified and characterized using culture-dependent and culture-independent techniques. Culture-dependent techniques included the investigation of the aerobic heterotrophic bacteria and fungi. Organisms were plated out on different media, and the bacterial component was broadly grouped using morphology. Dominant organisms were identified by sequencing of PCR amplified 16S ribosomal DNA fragments. Shannon-Weaver index for bacterial diversity was determined for each of the sites. Denaturing gradient gel electrophoresis (DGGE) profiling of selected bacterial communities were also conducted. Microbial community function was determined using enzyme assays of five major groups of enzymes, namely (i) dehydrogenase; (ii) β-glucosidase; (iii) acid phosphatase, (iv) alkaline phosphatase and (v) urease. Plant species results were then brought into context with microbiological diversity and functionality results using multivariate statistics. Physical and chemical parameters of the collected soil samples revealed patterns present along the urbanization gradient. The pH values were mostly higher in the sub-urban and urban sites than in the rural sites. Electrical conductivity values were generally highest in the sub-urban sites. Plant species composition revealed trends along the urbanization gradient. Ordinations clearly grouped the plant species into rural, sub-urban and urban groups regarding plant species composition. Rural sites had the highest number of plant species. Shannon-Weaver values regarding the plant diversity supported the plant species composition data indicating higher plant diversity in the rural areas, followed by the sub-urban and the urban areas. Plant structural data indicated that forbs were most numerous in the rural sites, and less so in the urban sites. Higher average aerobic heterotrophic bacterial levels were present in the urban soil samples. The bacterial levels were lower in the sub-urban and rural soil samples. Subsequent identification of the dominant bacteria in the soil samples revealed organisms of the genus Bacillus dominated the aerobic heterotrophic bacterial communities in the soil samples. Bacillus species dominated the soil samples along the urbanization gradient. Shannon-Weaver indices based on culture-dependent methods indicated that urban sites had the highest biodiversity. These results could have been exaggerated, because of an overestimation of the number of bacterial morphotypes present in samples. Fungal levels were higher in the soil from samples collected at the rural samples sites. The culture-independent method (DGGE) was not optimized and inconclusive results were obtained. Enzyme assays revealed that potential dehydrogenase, β-glucosidase and urease activity followed a trend along the urbanization gradient, with urban samples registering the highest values and rural sites the lowest. Enzymes involved in carbohydrate catabolism (β-glucosidase and dehydrogenase) registered significantly higher potential activity in urban sites than the sub-urban and rural sites. The results could indicate that urban sites have the potential to lose carbon at higher rates than the rural sites. This aspect may need further investigation. Higher potential urease activity could indicate higher N-cycling in the urban soil environment. Ordination results for soil-, plant- and microbial diversity as well as microbial functionality indicated certain trends along the urbanization gradient. Plant species composition and structure data indicated that urbanization has a definite effect on the plant communities in the urban ecosystem. Results regarding aerobic heterotrophic bacteria populations and potential enzyme activity of the dehydrogenase, β-glucosidase (both active in the carbon cycle) and urease (active in the nitrogen cycle) illustrated clear trends along the urbanization gradient. In conclusion, results indicated that urbanization has an effect on plant species composition, and the population and function of aerobic heterotrophic bacteria and the fungal population. Furthermore, this study demonstrated the potential of using microbial diversity and activity as tools to investigate carbon utilization and storage along an urban-rural gradient. / MSc (Environmental Sciences), North-West University, Potchefstroom Campus, 2011

Thesis (M. Environmental Management)--North-West University, Potchefstroom Campus, 2007.

In the pursuit of sustainable development, Environmental Impact Assessments (EIA) are acknowledged globally as a tool designed to assist governing authorities by providing the information required to make an informed decision regarding development proposals. South Africa has entrenched this EIA requirement in the presiding environmental legislation: the National Environmental Management Act (Act 107 of 1 998). In the effort to manage the negative impact of development on the rocky ridges of Johannesburg, the Gauteng Department of Agriculture, conservation, Environment and Land Affairs (GDACEL) has introduced a buffer zone requirement in the procedure of the EIA. The Red Data Plant Policy for Environmental Impact Evaluations for GDACEL described a buffer zone as a collar of land that filters out inappropriate influences from surrounding activities. As a tool in the EIA, a buffer zone is a worthwhile concept. However, the determination of the dimension of the buffer zone on rocky ridges, is non-discriminatory between sites, and thus, presents potential contention between decision-making authorities and developers. There is a need for further research to establish a scientifically acceptable method of determining site-specific buffer zones for individual EIA applications. The key objective of this paper is to suggest the possibility of determining a buffer zone that accommodates the unique environmental aspects of each site. This is achieved by determining the distance between the edge of existing developments and the point at which the successional climax community within the adjacent natural vegetation is established. Three suitable study sites, consisting of developed residential estates on ridges adjacent to nature reserves, were identified within the greater Johannesburg metropolis. The three study sites identified for this assessment include Kloofendal (west), Morning Hill (east) and Kliprivier (south). Within each study site field surveys were conducted along transects starting 5m from the development edge and ending 75m within the nature reserve adjacent to each site. Quantitative (species density) and qualitative (Braun-Blanquet cover-abundance values) data analysis was employed to describe and evaluate the identified plant communities. The data in this study provides clear indication that a 25-35m buffer zone would suffice for these specific plant communities to maintain a climax successional status if impacted on by residential development. This paper thus makes a case for permitting the determining of variable buffers zones, based on a gradient analysis of a plant community, as a potential panacea to the problem of resistance and reluctance to accept present standard buffer zones. / Thesis (M. Environmental Management)--North-West University, Potchefstroom Campus, 2007.

In the pursuit of sustainable development, Environmental Impact Assessments (EIA) are acknowledged globally as a tool designed to assist governing authorities by providing the information required to make an informed decision regarding development proposals. South Africa has entrenched this EIA requirement in the presiding environmental legislation: the National Environmental Management Act (Act 107 of 1 998). In the effort to manage the negative impact of development on the rocky ridges of Johannesburg, the Gauteng Department of Agriculture, conservation, Environment and Land Affairs (GDACEL) has introduced a buffer zone requirement in the procedure of the EIA. The Red Data Plant Policy for Environmental Impact Evaluations for GDACEL described a buffer zone as a collar of land that filters out inappropriate influences from surrounding activities. As a tool in the EIA, a buffer zone is a worthwhile concept. However, the determination of the dimension of the buffer zone on rocky ridges, is non-discriminatory between sites, and thus, presents potential contention between decision-making authorities and developers. There is a need for further research to establish a scientifically acceptable method of determining site-specific buffer zones for individual EIA applications. The key objective of this paper is to suggest the possibility of determining a buffer zone that accommodates the unique environmental aspects of each site. This is achieved by determining the distance between the edge of existing developments and the point at which the successional climax community within the adjacent natural vegetation is established. Three suitable study sites, consisting of developed residential estates on ridges adjacent to nature reserves, were identified within the greater Johannesburg metropolis. The three study sites identified for this assessment include Kloofendal (west), Morning Hill (east) and Kliprivier (south). Within each study site field surveys were conducted along transects starting 5m from the development edge and ending 75m within the nature reserve adjacent to each site. Quantitative (species density) and qualitative (Braun-Blanquet cover-abundance values) data analysis was employed to describe and evaluate the identified plant communities. The data in this study provides clear indication that a 25-35m buffer zone would suffice for these specific plant communities to maintain a climax successional status if impacted on by residential development. This paper thus makes a case for permitting the determining of variable buffers zones, based on a gradient analysis of a plant community, as a potential panacea to the problem of resistance and reluctance to accept present standard buffer zones. / Thesis (M. Environmental Management)--North-West University, Potchefstroom Campus, 2007.

New Zealand's South Island tussock grasslands have been highly modified by human activities, including burning, grazing and introductions of exotic plants for pastoralism. Studies suggest that tussock grasslands are degraded, in that native species have declined, and exotic species have increased in both diversity and abundance. These trends are primarily thought to be related to the impacts of grazing and subsequent grazing removal. Few studies have assessed long-term changes that have occurred in tussock grasslands, and those that have are generally limited to one particular location. This thesis aimed to investigate temporal changes in community structure in tussock grasslands, and relate these changes to environmental variables and land tenure. Data were used from 90 permanently-marked vegetation transects, which were set up on 19 geographically widespread properties in areas of tussock grassland across Canterbury and Otago in the South Island of New Zealand. The transects were on land in both conservation and pastoral tenure. Each transect was 100 m, and consisted of 50 0.25 m² quadrats. The transects were measured between 1982 and 1986 (first measurement), were re-measured between 1993 and 1999 (second measurement) and again between 2005 and 2006 (third measurement). A total of 347 vascular species were observed over the 90 transects and three measurement times. Species richness declined between the first and second measurements (first time interval), and increased between the second and third measurements (second time interval), at both the small (quadrat) and large (transect) scales. Both native and exotic species declined in mean quadrat species richness during the first time interval, and then increased during the second time interval. Changes in mean quadrat species richness were similar on transects in both conservation and pastoral tenure. Multivariate analysis of species' occurrences in quadrats identified a long gradient in species composition for these 90 transects. Four key plant communities were identifed along this gradient and differed in their mean elevation: (1) Highly-modified pastoral community, (2) Short-tussock grassland community, (3) Tall-tussock grassland community, (4) Alpine mat-forming species community. A detailed investigation into temporal changes that occurred on 53 transects that occurred in short- and tall-tussock grassland communities showed that changes in species composition were not consistent over time. Transects on different properties changed in species composition by different amounts. Specifically, in ordination space, transects on two properties changed in composition significantly more than transects on one other property. The property that a transect was on also affected the way that it changed in composition, i.e. native species were more likely to have increased on transects on some properties. Transects in conservation tenure did not change in species richness or composition differently from those in pastoral tenure. Considering that many native plants in tussock grasslands are relatively slow-growing, and that these areas have been grazed and burned for more than a century, we may expect it to be some time before we can detect differences in vegetation dynamics on conservation land from that on pastoral land. The changes in the community structure of these tussock grasslands were related to a combination of environmental factors, such as soil chemistry, climate, and management factors. This study has allowed greater understanding of vegetation change in tussock grasslands, and demonstrates the importance of long-term ecological monitoring in making reliable and accurate predictions about landscape-scale changes in tussock grassland community structure.

<p>The distribution of plant species and functional traits in alpine and arctic environments are determined by abiotic conditions, but also by biotic interactions. In this thesis, I investigate interactions among plants and herbivory effects on plant community composition and plant functional traits in three different regions: Swedish Lapland, Beringia (USA/Russia) and Finnmark (Norway). Reindeer grazing was found to be extensive in southern Lapland and had limited effects on plant community composition and seedling germination. However, reindeer presence was found to influence plant functional traits, particularly in the subalpine birch forest. Tall herbs were lower and had lower SLA when reindeer were present, while small herbs showed an opposite pattern. The contrasting effects on the two herb groups are probably explained by a competitive release for small herbs when the tall herbs are suppressed by reindeer. Rodents had the largest relative impact on plant community composition in southern Lapland and this is consistent with the study from Finnmark, where rodents heavily affected dwarf shrubs on predator-free islands. With no predators present, vole densities increased profoundly and almost depleted some dwarf shrub species. These results support the idea that small mammals in arctic and alpine tundra are controlled by predators (i.e. top-down). However, a decrease in the nutritional quality in a sedge after defoliation gives support for the idea that small mammals are regulated by plant quality (i.e. bottom-up). In Beringia, small and large herbivores differed in the relation to plant community composition, since large herbivores were related to species richness and small herbivores were related to plant abundance. Plant functional traits were related only to large herbivores and standing crop of vascular plants.</p>

The distribution of plant species and functional traits in alpine and arctic environments are determined by abiotic conditions, but also by biotic interactions. In this thesis, I investigate interactions among plants and herbivory effects on plant community composition and plant functional traits in three different regions: Swedish Lapland, Beringia (USA/Russia) and Finnmark (Norway). Reindeer grazing was found to be extensive in southern Lapland and had limited effects on plant community composition and seedling germination. However, reindeer presence was found to influence plant functional traits, particularly in the subalpine birch forest. Tall herbs were lower and had lower SLA when reindeer were present, while small herbs showed an opposite pattern. The contrasting effects on the two herb groups are probably explained by a competitive release for small herbs when the tall herbs are suppressed by reindeer. Rodents had the largest relative impact on plant community composition in southern Lapland and this is consistent with the study from Finnmark, where rodents heavily affected dwarf shrubs on predator-free islands. With no predators present, vole densities increased profoundly and almost depleted some dwarf shrub species. These results support the idea that small mammals in arctic and alpine tundra are controlled by predators (i.e. top-down). However, a decrease in the nutritional quality in a sedge after defoliation gives support for the idea that small mammals are regulated by plant quality (i.e. bottom-up). In Beringia, small and large herbivores differed in the relation to plant community composition, since large herbivores were related to species richness and small herbivores were related to plant abundance. Plant functional traits were related only to large herbivores and standing crop of vascular plants.

Grazing seems to be not only means of conserving species diversity of grasslands but also - in many cases - of its increasing. This thesis tries to find out the mechanisms of grazing that result in increased or decreased species diversity. The experiment was proceeded in Slupenec, a part of Český Krumlov, where horse pastures are situated. In order to compare grazing and mowing I collected phytosociological data from plots 1 x 1 mš. I also collected data about soil moisture, composition and pH in order to find out the main gradients in vegetation. The vegetation data from plots 20 x 20 cmš were collected before and after grazing on three pasturelands. In the chosen locality, higher level of plant species diversity have been proven on pastures in comparison with meadows. There is significantly higher percentage of plots contributing to the higher level of ß diversity on pastures than on meadows. At the same time the variability of vegetation was in most cases explained by the categorial variable pasture / meadow. Concerning selectivity of grazing, it has been proven that horses prefer grazing on species with greater cover abundance. The plots with lower rate of grazed species have got higher ß diversity. In terms of functional traits of plants, it has been proven that higher percentage of no-rosette...