Moderne Automatisierungstechnologien können das Laborpersonal von sich wiederholenden Aufgaben entlasten, sowie die Fehlerquote senken. Der Bedarf an qualifiziertem Personal für die Entwicklung und/oder Wartung solcher Systeme ist entsprechend hoch. Labormitarbeiter benötigen ein Grundverständnis der Technologie und Automatisierungsingenieure ein Grundverständnis der Laborprozesse. Aus diesem Grund wurde das System LabAutomation entwickelt. Durch die Verwendung verschiedenster Komponenten aus dem Bereich der Laborautomation, der modernen Transport-, Robotikund Sicherheitstechnik eignet sich das System für die Personalqualifizierung in unterschiedlichen Disziplinen. Nach entsprechender Softwareanpassung kann das System auch für Forschungszwecke eingesetzt werden. Das erste automatisierte Verfahren ist ein Enzyme-linked Immunosorbet Assay (ELISA), an dem die Funktion aller Komponenten deutlich wird.

Este estudo apresenta o desenvolvimento e validação de uma nova abordagem para a avaliação do cálcio intracelular em culturas de cardiomiócitos derivados de células-tronco pluripotentes induzidas humanas (hiPSC-CM - do inglês human induced pluripotent stem cell-derived cardiomyocytes) que pode ser aplicada para avaliar o efeito de drogas no acoplamento excitação-contração. O método consiste na estimulação elétrica e medição conjunta da fluorescência de forma automatizada e foi viabilizado a partir da inclusão de um sistema de estimulação elétrica em um leitor de ELISA (do inglês Enzyme-Linked Immunosorbent Assay). Um estimulador eletrônico compacto foi projetado para operar junto a um leitor de placas gerando pulsos quadrados monofásicos com duração de 5 ms e campo elétrico de 8 Vcm-1 aplicados por microeletrodos metálicos de platina-irídio em células em cultura. Uma placa de cultura normalmente utilizada em leitor de placas foi modificada para permitir a colocação do estimulador e dos eletrodos. A intensidade de fluorescência do cálcio intracelular foi avaliada utilizando um leitor de ELISA durante a estimulação elétrica em culturas de células marcadas com o indicador de Ca2+ Fluo-4 AM. A estimulação elétrica das células resultou em contrações regulares nas frequências de 0,1 Hz; 0,2 Hz; 0,3 Hz e 0,5 Hz induzidas pelo estimulador. Parâmetros dos transientes de cálcio foram estudados após a exposição de culturas de células ao Verapamil (0,05; 0,5 e 5,0 µM), a amplitude e a inclinação máxima da fase de subida foram progressivamente reduzidas com doses crescentes da droga. Os dados obtidos demonstraram que o método apresentado permite a avaliação automatizada de transientes de cálcio durante a estimulação elétrica de culturas de hiPSC-CM utilizando o sistema de estimulação em um leitor de ELISA. Esses resultados validaram a aplicabilidade do sistema ao estudo das alterações da dinâmica do cálcio intracelular induzidas por drogas em células sob estimulação elétrica. O sistema de avaliação automatizada desenvolvido pode ser ampliado para realizar a triagem de alto rendimento em bibliotecas de compostos que tem como alvo o acoplamento excitação-contração em células cardíacas humanas in vitro. / This study presents the development and validation of a new approach for the evaluation of intracellular calcium in cultures of cardiomyocytes derived from human induced pluripotent stem cells (hiPSC-CM), which can be applied to evaluate the effect of drugs on excitation-contraction coupling. The method consists of electrical stimulation and joint measurement of fluorescence in an automated manner and was made possible by the inclusion of an electrical stimulation system in an ELISA (Enzyme-Linked Immunosorbent Assay). A compact electronic stimulator was designed to operate inside a plate reader generating monophasic square pulses with duration of 5 ms and electric field of 8 Vcm-1 applied by platinum-iridium metal microelectrodes to cells in culture. A culture plate used in a plate reader was modified to allow placement of the stimulator and electrodes. Fluorescence intensity of intracellular calcium was measured during electrical stimulation of cell cultures loaded with Ca2+ Fluo-4 AM indicator using a plate reader. The electrical stimulation of the cells generated regularly spaced contractions following the pace of the stimulator at the frequencies of 0.1 Hz, 0.2 Hz, 0.3 Hz and 0.5 Hz. Transient profile parameters were studied after treating cell cultures with Verapamil (0.05, 0.5 and 5.0 µM) the amplitude and the maximum slope of rising phase were progressively reduced with increasing verapamil doses. The data obtained demonstrated that the method presented allows the automated evaluation of calcium transients during the electrical stimulation of hiPSC-CM cultures using the stimulation system in an ELISA reader. These results demonstrated the applicability of the system to the study of changes in the intracellular calcium dynamics induced by drugs in electrically stimulated cells. The system developed is amenable to scaling thus allowing high content automated drug library screening for compounds that target the excitationcontraction coupling in human heart cells in vitro.

Este estudo apresenta o desenvolvimento e validação de uma nova abordagem para a avaliação do cálcio intracelular em culturas de cardiomiócitos derivados de células-tronco pluripotentes induzidas humanas (hiPSC-CM - do inglês human induced pluripotent stem cell-derived cardiomyocytes) que pode ser aplicada para avaliar o efeito de drogas no acoplamento excitação-contração. O método consiste na estimulação elétrica e medição conjunta da fluorescência de forma automatizada e foi viabilizado a partir da inclusão de um sistema de estimulação elétrica em um leitor de ELISA (do inglês Enzyme-Linked Immunosorbent Assay). Um estimulador eletrônico compacto foi projetado para operar junto a um leitor de placas gerando pulsos quadrados monofásicos com duração de 5 ms e campo elétrico de 8 Vcm-1 aplicados por microeletrodos metálicos de platina-irídio em células em cultura. Uma placa de cultura normalmente utilizada em leitor de placas foi modificada para permitir a colocação do estimulador e dos eletrodos. A intensidade de fluorescência do cálcio intracelular foi avaliada utilizando um leitor de ELISA durante a estimulação elétrica em culturas de células marcadas com o indicador de Ca2+ Fluo-4 AM. A estimulação elétrica das células resultou em contrações regulares nas frequências de 0,1 Hz; 0,2 Hz; 0,3 Hz e 0,5 Hz induzidas pelo estimulador. Parâmetros dos transientes de cálcio foram estudados após a exposição de culturas de células ao Verapamil (0,05; 0,5 e 5,0 µM), a amplitude e a inclinação máxima da fase de subida foram progressivamente reduzidas com doses crescentes da droga. Os dados obtidos demonstraram que o método apresentado permite a avaliação automatizada de transientes de cálcio durante a estimulação elétrica de culturas de hiPSC-CM utilizando o sistema de estimulação em um leitor de ELISA. Esses resultados validaram a aplicabilidade do sistema ao estudo das alterações da dinâmica do cálcio intracelular induzidas por drogas em células sob estimulação elétrica. O sistema de avaliação automatizada desenvolvido pode ser ampliado para realizar a triagem de alto rendimento em bibliotecas de compostos que tem como alvo o acoplamento excitação-contração em células cardíacas humanas in vitro. / This study presents the development and validation of a new approach for the evaluation of intracellular calcium in cultures of cardiomyocytes derived from human induced pluripotent stem cells (hiPSC-CM), which can be applied to evaluate the effect of drugs on excitation-contraction coupling. The method consists of electrical stimulation and joint measurement of fluorescence in an automated manner and was made possible by the inclusion of an electrical stimulation system in an ELISA (Enzyme-Linked Immunosorbent Assay). A compact electronic stimulator was designed to operate inside a plate reader generating monophasic square pulses with duration of 5 ms and electric field of 8 Vcm-1 applied by platinum-iridium metal microelectrodes to cells in culture. A culture plate used in a plate reader was modified to allow placement of the stimulator and electrodes. Fluorescence intensity of intracellular calcium was measured during electrical stimulation of cell cultures loaded with Ca2+ Fluo-4 AM indicator using a plate reader. The electrical stimulation of the cells generated regularly spaced contractions following the pace of the stimulator at the frequencies of 0.1 Hz, 0.2 Hz, 0.3 Hz and 0.5 Hz. Transient profile parameters were studied after treating cell cultures with Verapamil (0.05, 0.5 and 5.0 µM) the amplitude and the maximum slope of rising phase were progressively reduced with increasing verapamil doses. The data obtained demonstrated that the method presented allows the automated evaluation of calcium transients during the electrical stimulation of hiPSC-CM cultures using the stimulation system in an ELISA reader. These results demonstrated the applicability of the system to the study of changes in the intracellular calcium dynamics induced by drugs in electrically stimulated cells. The system developed is amenable to scaling thus allowing high content automated drug library screening for compounds that target the excitationcontraction coupling in human heart cells in vitro.

Cette thèse porte sur l’étude des propriétés plasmoniques de réseaux nanostructurés dans le but de développer des applications de bioanalyse. L'intérêt de travailler avec ces structures est dû à leur grande sensibilité de surface, leur facilité de fabrication et leur simplicité d'analyse par spectrophotométrie en transmission. L'objectif était de fabriquer un dispositif capable d'effectuer du criblage à haut débit pour des fins biomédicales. Le premier objectif de la thèse porte sur l’étude des propriétés plasmoniques des réseaux de nanotrous. Une compréhension approfondie de ces structures a permis d’exploiter efficacement leur performance pour des applications de bioanalyse plasmonique. Une solution analytique fut établie pour étudier les modes de diffractions des polaritons de plasmons de surface d’onde de Bloch (BW-SPP). Cette équation a permis de corroborer les observations expérimentales avec des calculs théoriques par rapport au couplage plasmonique des réseaux de nanotrous. De plus, la variation de l'angle d'incidence a permis de déplacer la fréquence à laquelle les modes plasmoniques sont excités. Il était donc possible d'ajuster la position des BWSPP de façon à maximiser un couplage à une longueur d'onde désirée. Cet effet a été exploité avec la technique d'amplification de surface de diffusion Raman exaltée (SERS). Finalement, la sensibilité en surface de réseaux de nanotrous a été amplifiée selon l’angle d’excitation en transmission. Ce gain en sensibilité permet la détection de protéines d’IgG humain pour des basses concentrations de l’ordre du nanomolaire (nM). Le second objectif de la thèse traite du développement d’un lecteur multipuits couplé avec la technologie des réseaux de nanotrous afin de créer une plateforme de détection plasmonique pour du criblage à haut débit. Cet instrument offre une analyse en transmission d’échantillons nanostructurés à l’aide d’une plaque 96-puits pour des angles d’incidence allant jusqu’à 50°. Une nouvelle méthode de microfabrication de réseaux de nanotrous par photolithographie fut établie. Cette technique a permis de fabriquer des réseaux de nanotrous sur de grandes surfaces avec uniformité. L’efficacité du système fut démontrée pour la détection de protéines d’IgG humain, du méthotrexate (MTX) et le criblage d’anticorps de l’antigène prostatique spécifique (PSA). Le dernier volet de la thèse discute de l’étude des propriétés plasmoniques de réseaux de nanodisques recouverts d’un film d’or pour amplifier plus fortement la sensibilité des capteurs plasmoniques. Cette section de la thèse a démontré la performance des réseaux de nanodisques en tant que capteur plasmonique. En effet, les réseaux de nanodisques ont l’avantage d’exciter un mode de Bragg (BM, Bragg modes) en transmission directe générant une bande plasmonique fine ayant un facteur de mérite (FOM, figure of merit) élevé (sensiblité/réponse plasmonique). L’excitation de ces structures en transmission directe a simplifié énormément l’utilisation du robot multipuits par l’excitation à incidence normale tout en offrant une FOM supérieure aux réseaux de nanotrous. Pour continuer, des simulations 3D et une image Raman du signal SERS des structures ont démontré que le champ plasmonique des BM est grandement confiné autour des nanodisques. Ce confinement du champ plasmonique des réseaux de nanodisques à générer un facteur d’amplification SERS de l’ordre de 107. En somme, cette thèse démontre une étude des propriétés plasmoniques de réseaux nanostructurés pour des applications de bioanalyse par criblage à haut débit. Les études rapportées dans cette thèse ont prouvés que le champ plasmonique des réseaux de nanotrous peut être contrôlé afin d’amplifier leur sensibilité. De plus, la thèse rapporte la première plateforme de bioanalyse plasmonique utilisant un lecteur multipuits. Finalement, la fabrication de structures plasmoniques composés de nanodisques d’or a permis de mettre en évidence des propriétés optiques qui peuvent être mises à profit pour des mesures optiques ultras sensibles. / This thesis describes the plasmonic properties of nanostructured arrays towards development of biosensing applications. These structures exhibited several advantages such as high surface sensitivity, ease of microfabrication and simple excitation setup in transmission spectroscopy. The goal was to design a plasmonic device able to achieve high throughput analysis for biomedical purposes. The first section of the thesis covers a study of the plasmonic properties of nanohole arrays. An analytical solution was derived to assess plasmonic properties of the diffraction modes of Bloch-Wave surface plasmon polaritons (BW-SPP). Tuning of the excitation angle allowed for a precise control of the plasmonic signal’s position and an optimal coupling at a specific wavelength. This feature of nanohole arrays was demonstrated for applications in surface-enhanced Raman scattering (SERS). Finally, this section described the enhancement of the surface sensitivity of nanohole arrays through variation of the excitation angle in transmission. Such enhancement of the sensitivity allowed for detection of the concentration of human IgG proteins in the low nanomolar range. The second section of the thesis discusses the development of a multi-well plate reader coupled with the nanohole arrays technology. A custom-built plasmonic reader, designed at University of Montreal, allowed analysis of plasmonic structures in transmission with a 96-well plate for excitation where the incident angle is up to 50° relative to normal. A novel microfabrication technique of nanohole arrays, based on photolithography, is described. This technique allowed fabrication of nanohole arrays on a large scale with great surface uniformity. The performance of the plasmonic reader is demonstrated for sensing of human IgG proteins, methotrexate (MTX) and screening of prostate specific antigen (PSA) antibodies. The final section of the thesis describes studies on the plasmonic properties of nanodisk arrays coated with a gold film. This section described the performance of nanodisk arrays for plasmonic sensing. This structure benefited from the excitation of Bragg modes (BM) in direct transmission, which generated a sharp plasmonic band with a high figure of merit (FOM). The excitation of nanodisk arrays in direct transmission simplified the design of the plasmonic reader while providing a greater FOM than nanohole arrays. Furthermore, 3D simulations and a Raman image of the nanodisk arrays’ SERS intensity showed the confinement of the plasmonic field of the BM at the edges of the nanodisk. Such confinement of the plasmonic field of nanodisk arrays led to high SERS enhancements to a factor of 10^7. In summary, this thesis studied the plasmonic properties of nanostructured arrays towards development of applications for high throughput biosensing. These studies proved that the plasmonic field of nanohole arrays can be tuned to enhance their surface sensitivity. Furthermore, the thesis revealed the first plasmonic sensing platform using a multiwell plate reader. Finally, the thesis describes a novel plasmonic structure with outstanding optical properties; the gold coated nanodisk arrays.