The increasing use of plastics has elevated the risk of exposure to environmental pollutants such as plasticisers in the general population, making it necessary to understand the possible long term health consequences of the same. In this study we aim to understand how DEHP affects the gene expression in mice models and if it causes disruptions to its cellular pathways. Two datasets, GSE18564 and GSE14920 comprising of 15 and 60 samples respectively were downloaded from GEO database for analysis. Quality control checks were done using Principal Component Analysis and quantile normalisation. Differentially expressed genes were found using LIMMA model, following which only top 20 genes were selected for pathway analysis using KEGG and Gene Ontology. DEHP was found to be associated with chemical carcinogenesis, including negative regulation of extrinsic apoptotic signaling pathway and fatty acid metabolism. Furthermore, it seems likely that PPAR-alpha might play a key role in DEHP related metabolic disruption. Further studies are required to better elucidate the effect of DEHP on individual metabolic pathway implicated in this thesis.

No description available.

published_or_final_version / Environmental Management / Master / Master of Science in Environmental Management

This study was conducted to set up a systematic approach utilizing advantages of both wet lab and bioinformatic methodologies to study biodegradation abilities and microbial bacterial-functional relationship within bioremediation communities. Firstly, 11pharmaceuticals and personal care products (PPCPs)were selected as target chemicals for establishing an effective determination process in analyzing trace-level concentrations in the environment, and understanding the removal routes during pollutants removal process in wastewater treatment process using activated sludge. Ultra performance liquid chromatography-tandem mass spectrometry was utilized to develop a rapid, sensitive and reliable method without solid phase extraction pre-concentration for trace analysis of 11 PPCPs in influent and effluent from municipal wastewater treatment plants. Shorten the detection time and significant reduction of detection cost were achieved due to the omitting usage of solid phase extraction (SPE)process and avoiding the consumption of hydrophiliclipophilic balancced (HLB)cartridge. Research on removal routes of ten selected PPCPs in activated sludge found activated sludge hardly removed carbamazepine. Biodegradation was the sole route to remove acyclovir, metronidazole, benzylparaben, ethylparaben, methylparaben and propylparaben. Both adsorption and biodegradation were involved in the removal of ranitidine and benzophenone-3, while fluoxetine could be totally removed by adsorption in activated sludge. Secondly, as the target microbial community, activated sludge community was used to set up the global bioinformatic analysis process. Both metagenomic and metatranscriptomic approaches were processed to characterize microbial structure and gene expression of activated sludge community. The taxonomic profile showed thatactivated sludge was dominated by Proteobacteria, Actinobacteria, Bacteroidetes, Firmicutes and Verrucomicrobiaphyla. Gene expression annotation of nitrogen removal revealed that denitrification-related genes sequences dominated in both DNA and cDNA datasets while nitrifying genes were also expressed in relative high levels. Specially, ammonia monooxygenase and hydroxylamine oxidase demonstrated the high cDNA/DNA ratios, indicating strong nitrification activity. Ammonia-oxidizing bacteria present mainly belonged to Nitrosomonas and Nitrosospira species. A fast method to construct local sub-databases has been established for the quick similarity search and annotation of huge metagenomic datasets. The conducted tests showed sub-database annotation pipeline achieved a speedup of ~150-385 times, and got exactly the same annotation results with those of the direct NCBI-nr database BLAST-MEGAN method. This approach provides a new time-efficient and convenient annotation similarity search strategy for laboratories without access to high performance computing facilities. Thirdly, bisphenol A(BPA), which has a partially known biodegradation pathway and relevant bioremediating genes, was chosen as a model to establish a pipeline for systematical understanding the pathways and gene/bacteria relationships in an enriched microbial community. 11 new metabolites were detected during BPA degradation. Thereby, a novel pathway of degrading BPA metabolite was proposed. Sphingomonas strains were dominant taxa in initial degradation of BPA, while the other taxa were competing BPA metabolites during degradation. Metagenomic binning results showed a cytochrome P450 monooxygenase system, which was previously reported BPA mediator, was sharing by two Sphingomonas strains, showing the undergoing mechanism of competition of the two strains. The observations suggested bacterial specialization may occur in that community that each taxon was selected to degrade certain metabolite in a community economical way. / published_or_final_version / Civil Engineering / Doctoral / Doctor of Philosophy

<p>An extensive use of chemicals in countless consumer products has resulted in human exposure to several persistent organic pollutants (POPs). Sufficient knowledge about their chemical composition properties and environmental faith is required, to be able to proper risk assess and regulate the substances. Significant data gaps exist regarding knowledge of actual exposure to humans and toxicological effect data.</p><p>The objective of this thesis was to add human exposure data of a few POPs from four case studies. The analytes discussed in this thesis are polychlorinated dibenzo-p-dioxins and furans (PCDDs/PCDFs), polychlorinated biphenyls (PCBs), polybrominated diphenyl ethers (PBDEs) and hexabromocyclododecane (HBCDD).</p><p>Three European populations were studied. Milk was analysed from a group of women, who were accidentally exposed to high levels of 2,3,7,8-TetraCDD (TCDD) in Seveso, 1976. Still today, twice as high TCDD levels were recorded in the milk, compared to background concentrations. Serum was analysed from mothers and their infants from The Netherlands. Cord serum contained equal amounts of POPs as in mother’s blood, indicating non-hindered placenta transfer. Serum analysed from Swedish men and women with a high fish intake had elevated PCB and PCB metabolite (OH-PCB) levels. Additionally, butter was collected worldwide and shown to be a suitable matrix for dairy product survey of POPs.</p><p>The exposure levels in the four papers were compared to recently reported exposure levels in Europe. It is indicated in the thesis that the PCDDs/PCDFs and PCBs toxic equivalency (TEQ) levels are of concern, i.e. the ratio between threshold levels for adverse health effects and TEQ exposure levels is lower than requested margin of safety. Average levels of PBDE/HBCDD in the European population are estimated to be of no concern today, but for individuals with intakes at the 95th percentile are the current margins of safety small.</p>

Recruitment of American eels (Anguilla rostrata) to Lake Ontario has declined rapidly over the past few decades. The commercial yellow eel fishery in Lake Ontario was closed in 2004 due to a lack of eel abundance. Researchers have been attempting to ascertain the reasons for the decline, although thus far, without definitive answers. In this thesis, the question of chemical contamination is addressed as it relates to female eel spawner quality. Spatial concentration trends of halogenated persistent organic pollutants (POPs) are described in eels collected from across eastern Canada, as well as temporal concentration trends in eels collected from a historically important area of northeastern Lake Ontario, Canada. Chlorinated POPs in eels, namely, organochlorinated pesticides, polychlorinated biphenyls, polychlorinated dibenzo-p-dioxins and dibenzofurans are all significantly less than historic values which peaked in the 1960-70s. Measured concentrations of chlorinated POPs in eels from Lake Ontario have decreased by up to 3-fold over the past three decades, and exceeded toxicity thresholds historically for surrogate species (European eel and lake trout). Thus, chlorinated POPs may have had an effect on spawner quality. Concentrations of legacy POPs in eels were dependent on their origin, with eels from highly urbanized and industrialized areas having significantly higher concentrations than eels captured in less developed regions. Similar trends were observed for polybrominated diphenyl ethers and chlorinated norbornene flame retardants. A number of emerging brominated compounds were also measured in these eels by non-target analysis including bromophenols, bromobenzenes, and bromoanisoles. This thesis demonstrates that eels are an ideal species to investigate local sources of pollution, and provide chemical data that may be used in the future, when more toxicity information is available for eels, to assess the health risks posed by accumulated chemical contaminants. / Thesis (Ph.D, Chemistry) -- Queen's University, 2013-05-23 09:27:59.593

Su veikliojo dumblo suspensijomis, gautomis iš Vilniaus miesto, Nemenčinės ir Utenos miesto nuotekų valyklų buvo vykdomi tyrimai, kuriais siekta ištirti nuotekose esančių teršalų poveikį veikliojo dumblo mikroorganizmams ir nustatyti indikatorines rūšis šio poveikio įvertinimui. Tyrimai atlikti su šiais teršalais: 3,5 – dichlorfenoliu (3,5 – DCP), etanoliu ir valgomąja druska (NaCl). Veikliojo dumblo suspensijos buvo analizuojamos mikrobiologiškai, skaičiuojami mikroorganizmų rūšys ir individų skaičius (ind./ml). Per tyrimą buvo atlikta 16 eksperimentų ir nustatytos mikrobiologinė nuotekų valyklų sudėtys, iš kurių buvo gautos veikliojo dumblo suspensijos. Buvo įvertinti teršalų poveikiai veikliojo dumblo mikroorganizmų bendrijoms. Prie mažų (2,5 ppm, 5 ppm ir 7,5 ppm) 3,5 – DCP koncentracijų veikliojo dumblo mikroorganizmai adaptavosi, o didelės (15 ppm ir 20 ppm) koncentracijos naikina veikliojo dumblo mikroorganizmus. Etanolis veikliojo dumblo mikroorganizmų bendrijas veikia skatinančiai, kadangi auga veikliojo dumblo koncentracija ir bakterijų monokolonijų skaičius. Mažos (3 g/l, 5 g/l ir 7 g/l) NaCl koncentracijos skatina veikliojo dumblo mikroorganizmų bendrijas, prie 10 g/l dumblo organizmai adaptuojasi, o prie didelės (15 g/l) NaCl koncentracijos mikroorganizmų skaičius mažėjo. Taip pat nustatytos jautriausios mikroorganizmų rūšys (Acineria uncinata, Aspidisca costata, A. lynceus, Vorticella spp., Ptelomonas sp., plikosios amebos ir bakterijos, sudarančios... [toliau žr. visą tekstą] / The investigations of active sludge taken from Vilnius, Utena and Nemenčinė wastewater treatment plants was carries out. The main goal was investigate the effects of wastewater pollutants on communities of microorganisms taken from activated sludge and to identify indicator species of this impact assessment. Investigations were carried out with these pollutants: 3,5 - dichlorophenol (3,5 - DCP), ethanol, and salt (NaCl). Active sludge was analyzed microbiologically, number of species and number of individuals (ind. / ml) were counted. In this study 16 experiments was carried out and microbiological composition of wastewater treatment plants was estimated. Results showed that activated sludge microorganisms adapted to low (2.5 ppm, 5 ppm and 7.5 ppm) concentrations of 3,5 – DCP, but high (15 ppm and 20 ppm) concentrations reduced abundance of microorganisms. Ethanol stimulated community of activated sludge, because concentration of activated sludge and number of bacterial colonies increased. Low concentrations (3 g/l, 5 g/l ir 7 g/l) of NaCl also stimulated abundance of active sludge community, microorganisms adapted to the concentration of 10 g/l, and number of microorganisms decreased when concentration of NaCl was high (15 g/ l). Acineria uncinata, Aspidisca costata, A. lynceus, Vorticella spp., Ptelomonas sp., gymnamoebae and bacteria (which makes clusters) – this was the most sensitive species of microorganism in activated sludge. A. costata resisted quite high (even 10... [to full text]

M.A. / South Africa is situated within a semi-arid part of the world which is characterised by high seasonal variability in terms of rainfall and runoff, with high evaporation rates. This causes streamflow to be relatively low for most of the year, with seasonal sporadic high flows. Further stress is applied to the water resource through population growth, increased urbanisation and industrial activities. The study area is considered to be the most populated of the Upper Vaal Water Management Area (WMA), which is the most important WMA in terms of economic productivity in South Africa. This research report focused on assessing the temporal and spatial variations of pollution between four different sampling points located in the Vaal Barrage Reservoir, which is located in the heart of the Upper Vaal WMA. The Vaal River Barrage Reservoir forms a 64 kilometres long water body with an estimated total storage capacity of 63 million litres of water. The four sampling points are V2 (Vaal River at Engelbrechts Drift Weir); VRB 24 (Vaal River Barrage at 24 km); VRB 37 (Vaal River Barrage at 37 km) and V17 (Vaal Barrage Reservoir Outlet). The aim of this research is to determine the type of physical and chemical pollutants within the Vaal River Barrage which currently poses the biggest problem to river health. The spatial and temporal differences of the pollutant loads are established and discussed. In addition, it is determined what the seasonal influence of rainfall has on the water quality measured at the four different sampling points. Chemical pollutants which currently pose the biggest threat in terms of water quality for the Vaal Barrage Reservoir are Phosphates, Electrical Conductivity and Sulphates. These three water quality variables do not comply with the minimum standards as set by Rand Water. The occurrence of these pollutants in the Vaal River can be explained by the vast inputs of return flow water from sewage treatment plants, underground mine water and discharge from industries. Microbiological factors were not taken into consideration for this dissertation, due to the unavailability of the data for most of the sampling sites for the majority of the study period. It was found that there are seasonal variations in terms of water quality at three sampling points: VRB24, VRB37 and V17. Sample point V17 had the highest inverse correlation for the three pollutants which pose the biggest threat to the health of the Vaal Barrage Reservoir water body. This implies that high seasonal variability occurs in the pollutant load at this sampling point. Sample point V2 had extremely low inverse correlation figures, which implies that rainfall has little or no impact on the level/concentration of a pollutant. This can be explained by two factors. Firstly the dilution effect which water released from the Vaal Dam has due to the close proximity to V2. Secondly because urban, mining and industrial activities are much less evident at this point, and subsequently return flows are less.

In recent years, the increasing release of trace organic chemicals to the aquatic environment have been problematic to both the ecosystem and the human society. These trace organic chemicals, regarded as emerging contaminants, include different categories of chemicals, which are either deemed to be safe for human consumption or they are naturally occurring compounds. As a newly recognized class of emerging contaminant, artificial sweeteners are proven to be one of the most ubiquitous classes of emerging contaminants in environmental waters. Its transformation to different suite of TPs during water treatment processes generated more toxic influence than the parent compound is problematic. The realization of the widespread of emerging contaminants, together with their ambiguous fate and impact to the environment have led to the development of advanced oxidation processes that can effectively attenuate this wide range of contaminants. In this work, several catalytic advanced oxidation processes were studied. On one hand, it aimed to evaluate their effectiveness on the removal of the artificial sweetener - acesulfame; and on the other hand, to shed lights on the future development of catalytic advanced oxidation processes. In the first part of this thesis, the photo-Fenton treatment was evaluated on its potential to effectively remove acesulfame together with the produced transformation products, and the post-treatment toxicity screening. The photo-Fenton treatment was found to be effective in removing both the parent compound and the transformation products, without leading to an increase in toxicity, which is largely related to the effective removal of the transformation products. In attempt to reduce the reliance on UV irradiation, newly synthesized carbon and nitrogen co-doped TiO2-based photocatalyst was applied to capture the simulated sunlight for the degradation of acesulfame. The heterogenous photocatalytic treatment was found to involve several different oxidative reactive species for both degradation and transformation by using several scavengers to alter the degradation profile. Unexpected transformation product was also formed upon treatment in actual water matrix, suggesting the impact of water constituents to the transformation of emerging contaminants. Toxicity results indicated the inability to achieve detoxification, suggesting that a more effective degradation process was needed. To accelerate the degradation process, and enhance the performance at neutral pH, the use of redox mediators for Fenton/Fenton-like system was evaluated. Developed novel Fenton-like system involving copper(II) as transition metal ion, persulfate as oxidant and mercaptosuccinic acid as redox mediator led to effective removal of different contaminants. Elucidation of the proposed oxidation mechanism suggested the role of each components of the system, and the generation of different reactive species for degradation as indicated by the different acesulfame transformation profile obtained. The implementation of redox mediators to Fenton/Fenton-like system was beneficial and an effective approach. In short, this work presents several kinds of catalytic advanced oxidation process and shed lights on improving the degradation performance with directions for the future development of better and more effective water treatment processes.

A dissertation submitted to the Faculty of Science, University of the Witwatersrand in fulfilment of the requirements for the degree of Master of Science. Johannesburg 2015 / Exposure to inorganic and organic pollutants residues causes negative effects to human health. They can cause damage to the living organism as well as to the environment. Humans take up these pollutants through skin absorption, respiration and ingestion of contaminated food and also the drinking water as a potential contaminants exposure route for inorganic and organic pollutants to humans. Studies have shown that inorganic and organic pollutants can be retained in food crops at higher than the permissible levels, thus posing some health risks to consumers. This study sought to assess the potential risk posed by inorganic and organic pollutants to human health as a result of consuming raw food and processed food cooked in traditional utensils. The food samples and the traditional utensils were collected in Kinshasa and Johannesburg markets. In total ninety- two food samples were assessed. The food crops included: cabbage, cassava, beans, beef meat and fish (tilapia). Ten trace elements, namely: Al, As, Cd, Cr, Cu, Hg, Mn, Pb, Se and Zn were analysed in raw food samples using ICP-OES, ICP-MS and mercury analyser. These metals were also analysed in food cooked with the traditional utensils. The health risk indices calculated were: Daily Intake of Metal (DIM) and Hazard Index (HI). The results obtained reveal that the raw food collected in Johannesburg markets contained a significant (p ˂ 0.05) higher concentration in all elements than the food samples collected in Kinshasa markets. Hg was detected only in fish samples. It was observed that cooking utensils can leach some significant quantities of trace elements into food during processing, hence resulting increase the concentration of these metals in processed foods. The DIM exceeded the oral reference dose (Rfd) and the HI were ˃ 1 in all the food cooked. The results of metal found in this current investigation were above the standard permissible limit set by FAO/WHO. On the other hand, the levels of 17 organochlorine pesticides were assessed in uncooked and cooked beans, cabbage, cassava, fish and beef meat collected in Kinshasa and Johannesburg markets. It was noticed from the results recorder that the mean concentration of organochlorine pesticides in uncooked food collected in Johannesburg market were significantly high (p ˂ 0.05) than the uncooked food from Kinshasa markets. DDE recorded its highest mean level (253.58±4.78 μg kg-1) in beef meat samples collected in Johannesburg markets. The results from the current study revealed that after cooking the amounts of organochlorines were significantly reduce than the uncooked food. Residue amounts of organochlorine pesticides found in this study are considerably lower than the recommended amount of organochlorines set by WHO/FAO (300 μg kg-1). / MT2016