V teoretické části práce by shrnuty chemické a fyzikální vlastnosti, chemická struktura a využití přírodního polysacharidu gum karaya. Hlavním cíle diplomové práce byla alkalická modifikace původní nerozpustné gum karayi na rozpustný produkt, který může být v budoucnu využit pro další aplikace například v medicíně. Nerozpustnost gum karayi je způsobena přítomností acetylových skupin a vícemocných iontů ve struktuře polysacharidu. Byly zkoumány optimální podmínky pro modifikační proces. Pro modifikaci byl použit hydroxid sodný, draselný nebo amonný a čas modifikace od 1 minuty po 24 hodin pro roztok originální gum karayi s koncentrací od 0,1 do 3 %. Pro určení chemického složení originálního a modifikovaných vzorků byla využita FTIR. Bylo prokázáno, že vzorky A2, B1 - 7, C1 - 8 a E1 - 2 byly zcela deacetylovány, protože pás pro acetylovou skupinu nebyl v FTIR spektrech pozorován. Odstranění acetylových skupin alkalickou modifikací bylo taktéž potvrzeno 13C CP MAS NMR. Pomocí XRD byl prokázán amorfní charakter originálního vzorku. Množství vlhkosti a teplotní stabilita vzorků byly zkoumána pomocí TGA. Bylo zjištěno, že termální stability originální gum karayi je vyšší než u modifikovaných vzorků. Termální stabilita modifikovaných vzorků byla ovlivněna reakčními parametry. Entalpické změny vzorků byly studovány pomocí DSC, nicméně nebyly pozorovány žádné významné rozdíly mezi modifikovanými vzorky a originální gum karayou. Prvkové složení bylo určeno pomocí ICP-OES a byla potvrzena přítomnost vápníku, draslíku a hořčíku ve struktuře polysacharidu. Molekulová hmotnost modifikovaných vzorků byla měřena pomocí GPC a byla stanovena na 8 milionů g·mol-1. Reologické měření roztoků gum karayi bylo provedeno pro určení lineární viskoelastické oblasti. Dále byl sledován efekt NaCl na viskozitu originálního vzorku. Viskozita klesala s vyšším množstvím NaCl. Pokles viskozity originálního vzorku je způsoben výměnou vápenatých iontů za sodné, což vede k uvolnění fyzikálně vázané struktury a tím k vyšší rozpustnosti vzorku ve vodě.

C-reactive protein (CRP) is a part of the innate immune system, is synthesized in the liver, its blood level increases in inflammatory states, and it binds to Streptococcus pneumoniae. The conformation of CRP is altered under conditions mimicking an inflammatory milieu and this non-native CRP also binds to immobilized/aggregated/pathogenic proteins. Experiments in mice have revealed that one of the functions of CRP is to protect against pneumococcal infection. For protection, CRP must be injected into mice within two hours of administering pneumococci, thus, CRP is protective against early-stage infection but not against late-stage infection. It is unknown how CRP protects or why CRP does not protect against late-stage infection. The hypotheses are that the protection requires complement activation by CRP-pneumococci complexes and that CRP cannot protect if pneumococci have time to recruit complement inhibitor factor H on their surface to become complement attack-resistant. To test these hypotheses, we generated CRP mutants by site-directed mutagenesis: a mutant that binds to pneumococci but does not activate complement and a mutant that binds to immobilized factor H. We found that mutant CRP incapable of activating complement was not protective against infection and that mutant CRP capable of binding to factor H was protective against both early and late stage infections. Additional experiments showed that CRP enhances the effects of the antibiotic clarithromycin in reducing bacteremia in infected mice. Moreover, we observed that mutant CRP capable of binding to factor H bound to several proteins immobilized on plastic, suggesting that CRP recognizes a pattern, probably an amyloid-like structure, on immobilized proteins. Indeed, mutant CRP, after binding to amyloid b peptides, prevented the formation of pathogenic amyloid fibrils. Lastly, employing a hepatic cell line, we investigated the mechanism of CRP expression in response to pro-inflammatory cytokines. We found that the transcription factor C/EBPb and two C/EBP-binding sites on the CRP promoter were critical for inducing CRP expression. We conclude that complement activation is necessary for CRP-mediated protection against infection, that CRP functions in two structural conformations, that CRP and clarithromycin act synergistically, that CRP has anti-amyloidogenic properties, and the increased CRP expression requires C/EBPb.

Background: The 5 subunits of native pentameric C-reactive protein (CRP) are dissociated to generate the monomeric form of CRP (mCRP) in some in vitro conditions, both physiological and non-physiological, and also in vivo. Many bioactivities of mCRP generated by urea-treatment of CRP and of mCRP generated by mutating the primary structure of CRP have been reported. The bioactivities of mCRP generated by spontaneous dissociation of CRP are largely unexplored. Methods: We purified mCRP generated by spontaneous dissociation of CRP and investigated the binding of mCRP to enzymatically-modified low-density lipoprotein (E-LDL). Results: mCRP was approximately 60 times more potent than CRP in binding to E-LDL. In the presence of the small-molecule compound phosphoethanolamine (PEt), at 37 °C, the binding of mCRP to E-LDL was enhanced <2-fold, while the binding of CRP to E-LDL was enhanced >10-fold. In contrast, PEt inhibited the binding of both CRP and mCRP to pneumococcal C-polysaccharide, another phosphocholine-containing ligand to which CRP and mCRP were found to bind. We have not investigated yet whether PEt alters the structure of CRP at 37 °C. Conclusions: Combined data suggest that the targeting of CRP with the aim to monomerize CRP in vivo may be an effective approach to capture modified forms of LDL.

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京都大学 / 新制・課程博士 / 博士(農学) / 甲第23952号 / 農博第2501号 / 新制||農||1091(附属図書館) / 学位論文||R4||N5387(農学部図書室) / 京都大学大学院農学研究科応用生命科学専攻 / (主査)教授 栗原 達夫, 教授 小川 順, 教授 阪井 康能 / 学位規則第4条第1項該当 / Doctor of Agricultural Science / Kyoto University / DGAM

Interactions between biomolecules and cellulose films at solid/liquid interfaces was studied by surface plasmon resonance spectroscopy (SPR), quartz crystal microbalance with dissipation monitoring (QCM-D) and in situ atomic force microscopy (AFM) measurements. This dissertation shows the porous character of nanocrystalline cellulose films as the key feature for enhanced adsorption of chemically modified polysaccharides and provides quantitative analysis of polymer supported phospholipid structures as a stable platform for studying membrane-related processes. Smooth cellulose I films were prepared by spincoating cellulose nanocrystal suspensions onto positively charged self-assembled monolayers on gold. The adsorption of pullulan cinnamate (PC) onto cellulose surfaces increased with increasing degree of cinnamate substitution. The interactions between PCs with higher degree of substitution (DS) and porous nanocrystalline cellulose (NC) films presumably generated looped multilayer PC structures that adsorbed more than twice as much onto NC films than onto regenerated cellulose (RC) films. PC chains not only covered the NC surface but also penetrated into the porous film. The porous features of NC film are responsible for the greater adsorption of polymer chains relative to tightly packed RC films. Adsorption of phospholipid vesicles onto RC and NC films was also studied. Aggregates of intact vesicle were observed on NC surfaces with high water content ~ 84 % by mass. Phospholipid patches with smooth features were found to assemble onto RC surfaces with a lower degree of hydration ~ 30 % by mass. Vesicle membrane breakage was triggered by a destabilizing agent, LysoPC. The great mass decrease, and changes in dissipation and degree of hydration for phospholipid structures after exposure to LysoPC corresponded to the transformation from vesicles to layered structures. Initial binding of LysoPC micelles to unruptured vesicles was clearly resolved in SPR, whereas the huge mass decrease associated with bound water hides the initial adsorption of LysoPC onto vesicles in QCM-D experiments. The intitial binding of LysoPC micelles onto vesicle membranes lasted for 200 seconds with a maximal increase of 14 % by mass prior to vesicle collapse. The role of cholesterol in phospholipid interactions with model cellulose surfaces was also considered. Supported vesicle layers over RC surfaces were observed for vesicle membranes containing ≥ 6.3 % by mole cholesterol, whereas phospholipid or phospholipid with lower cholesterol content formed disconnected lipid islands on RC surfaces. Meanwhile, intact vesicles were always observed on NC surfaces for phospholipid/cholesterol blends regardless of the cholesterol content. The intact vesicles on cellulose surfaces were attributed to the ability of cholesterol to accommodate vesicle deformation. These studies showed the impact of mesoscale structure of cellulose films on adsorbates. It sheds light on the role of the lignin-carbonhydrate-complex in plant cell wall structure and will inform the next generation of biomimetic nanocomposites. The designed polymer supported biomimetic membranes provide a perfect platform to develop intact and ruptured protoplast systems for the study of plant cell wall self-assembly. / Ph. D.

This research was designed to investigate the effect of cations on activated sludge characteristics and also to determine their influence on digestion performance. For this purpose, cations in solution and in floc were evaluated along with various activated sludge characteristics and the collected waste activated sludge underwent both anaerobic and aerobic digestion. It was found that large amounts of biopolymer (protein + polysaccharide) remained in the effluent of WWTP that received high influent sodium but had low iron and aluminum in floc. However, sludges from plants with high sodium and high iron and aluminum dewatered well and produced high quality effluents, suggesting that iron and aluminum have significant positive effects on floc properties. Following anaerobic digestion, a significant increase in solution protein occurred and correlations between solution protein, ammonium production, percentile volatile solids reduction and iron in floc were obtained. These data indicate that iron-linked protein is released to solution when iron is reduced and its degradation is responsible for volatile solids reduction in anaerobic digestion. In aerobic digestion, polysaccharide in solution increased along with calcium, magnesium and inorganic nitrogen. This implies that divalent cation-bound biopolymer might be the primary organic fraction that is degraded under aerobic digestion. Combined (anaerobic/aerobic) digestion was performed and produced further volatile solids destruction with discrete cation and biopolymer response during each phase of digestion. These results support the theory that two types of organic matter with different cation bindings are present in floc and each type is degraded under different digestion processes. / Master of Science

<p>Xyloglucans are polysaccharides found as storage polymers in seeds and tubers, and as cross-linking glycans in the cell wall of plants. Their structure is complex with intricate branching patterns, which contribute to the physical properties of the polysaccharide including its binding to and interaction with other glycans such as cellulose.</p><p>Xyloglucan is widely used in bulk quantities in the food, textile and paper making industries. With an increasing interest in technically more advanced applications of xyloglucan, such as novel biocomposites, there is a need to understand and control the properties and interactions of xyloglucan with other compounds, to decipher the relationship between xyloglucan structure and function, and in particular the effect of different branching patterns. However, due to the structural heterogeneity of the polysaccharide as obtained from natural sources, relevant studies have not been possible to perform in practise. This fact has stimulated an interest in synthetic methods to obtain xyloglucan mimics and analogs with well-defined structure and decoration patterns.</p><p>Glycosynthases are hydrolytically inactive mutant glycosidases that catalyse the formation of glycosidic linkages between glycosyl fluoride donors and glycoside acceptors. Since its first conception in 1998, the technology is emerging as a useful tool in the synthesis of large, complex polysaccharides. This thesis presents the generation and characterisation of glycosynthases based on xyloglucanase scaffolds for the synthesis of well-defined homogenous xyloglucan oligo- and polysaccharides with regular substitution patterns.</p>

This work deals with the study of the drying-mediated assembly of colloidal gold nanoparticles (Au NPs) in mesoscale aggregation patterns and their manipulation by atomic force microscopy (AFM) on model surfaces. The assembly of NPs in mesoscale and complex aggregation patterns assisted by the wetting and the drying of complex fluids (suspensions of NPs, NPs/biopolymers mixed solutions) on homogeneous and heterogeneous molecular surfaces was studied. This issue is important, both for understanding fundamental processes of self-organization, and for generating new functional mesostructures. The drying of complex fluids often leads to the emergence of highly complex aggregation structures as shown and discussed in this work. The richness and the aesthetics of these complex structures generated by these interfacial phenomena reflect not only the bulk properties of fluids (different sizes and lengths- scales, kinetic changes in state), but more importantly, the coupling between the fluid properties and those of the substrate surface (wetting interactions, confinement, hydrodynamics). In the case of two important heterogeneous fluids which are Au NPs and polysaccharide solutions, these drying-mediated structure formation lead to the genesis of unusually large and highly ramified dendrites aggregation patterns. The growth mechanism and the critical parameters that control the morphogenesis of these complexes structures are addressed in this work. In addition, the aging mechanisms and kinetics of these structures that are metastable and evolve either through direct dislocation via clusters NPs mobility on the surface, or through undulation-induced roughning of the dendrite branches. To better understanding this NPs mobility and thus the dislocation mechanism of the aging, a detailed study based on the manipulation of NPs by atomic force microscopy in tapping mode (AFM) was developed. The threshold dissipated energy to manipulate (move) the NPs can be quantified according to the intrinsic parameters of the particle (size, shape, and chemical nature), the chemical nature and topography of the substrate, and finally the operating and environment conditions. This work enabled us to understand the mechanisms and characterize the critical parameters that may intervene in the dislocation (aging) of NPs-based functional structures, depending on the nature of the environment liquid and the substrate. Finally, this work proposes an approch of evaluation and of monitoring the stability and the aging of these aggregation structures, in particular, those formed from the drying of films and drops of nano-particles solutions (metal nanoparticles, blood: proteins, viruses ...).