Inbreeding involves the mating of closely related individuals at a higher frequency than at random; this can decrease the average fitness of populations and individuals by reducing the presence of heterozygotes and augmenting the expression of deleterious genes. Since marine invertebrates exhibit widespread dispersal, their potential for inbreeding is often disregarded. The adult sessile state of barnacles creates the potential for inbreeding as a result of necessary copulation between neighboring individuals. Depending on the degree of mixing that occurs during dispersal, closely related individuals or siblings may settle in close proximity, generating the possibility of kin aggregation and consequent inbreeding. Despite the high probability of closely related or sibling barnacles to settle contiguously, their genetic relatedness and potential for inbreeding remain relatively understudied. We examined genetic relatedness between individuals of Tetraclita rubescens at Monterey and Bodega Bay to elucidate the potential for nonrandom dispersal and subsequent inbreeding. Genetic relatedness was assessed through microsatellite analysis, and correlated with geographic distance, and size. There was a significant association between geographic distance and genetic relatedness at Bodega Bay, which may be attributed to lower densities of individuals, frequency of settlement events and oceanographic conditions. The results of this study demonstrate high genetic relatedness at small spatial scales, bolstering the potential for nonrandom dispersal and subsequent inbreeding of T. rubescens.

Centaurea tchihatcheffii Fisch. &amp / Mey. is a critically endangered annual endemic plant found only in Ankara. This study aimed to determine its distributional range, metapopulation status, the effects of agricultural activities, and assess conservation options. Occurrences and population size estimates were carried out by ground surveys. Two adjacent subpopulations were intensively studied during 2004-2008. Plant and seed demographic data were collected in the field and by laboratory tests. Field experiments simulated the effects of agricultural practices. Risks of extinction and possible impacts of different management actions were investigated through a population viability analysis (PVA) by constructing a two-stage stochastic model. Six scenarios involving different management actions were run with 10,000 replications each using RAMAS Metapop. A total of 14 patchily distributed subpopulations were found to have an extent of occurrence of &gt / 700 km2. Herbicide applications caused extreme mortality and reduced germination success, and were shown to be the major anthropogenic threat against long-term survival of C. tchihatcheffii. Tillage led to an increase in density and reproductive success in the following year. PVA simulations for most scenarios predicted extinction of both subpopulations within 4 to 95 years, but a conservation management scenario involving delayed tillage ensured viable populations with a combined size of 21 million individuals. PVA results demonstrated that timing and frequency of tillage is crucial. Therefore, we propose tillage to be carried out after seed set every other year for protected subpopulations to ensure their long term persistence. Alternatively, unprotected subpopulations elsewhere can benefit from organic or nature-friendly farming.

Title from PDF of title page. / Document formatted into pages; contains 117 pages. / Thesis (M.S.)--University of South Florida, 2003. / Includes bibliographical references. / Text (Electronic thesis) in PDF format. / ABSTRACT: Bacterial source tracking (BST) methods often involve the use of phenotypic or genotypic fingerprinting techniques to compare indicator bacteria such as Escherichia coli isolated from unknown sources against a library of fingerprints from indicator bacteria found in the feces of various known source animals. The predictive capability of a library is based in part on how well the library isolates reflect the true population diversity of indicator bacteria that can potentially impact a water body. The purpose of this study was to compare the behavior of E. coli population structures in the feces of humans, beef cattle and horses across different parameters. Ribotyping and antibiotic resistance analysis were used to "fingerprint", or subtype E. coli isolates. Significantly greater diversity was observed in the E. coli population of horses compared to the human or beef cattle sampled. / ABSTRACT: Subtype sharing between individuals from all host categories was infrequent, therefore the majority of E. coli subtypes were sampled from a single individual. The dominant E. coli populations of nine individuals (three per host source category) were monitored over time, which demonstrated that E. coli subtypes within a host individual vary on a monthly time frame, and an increase in the frequency of subtype sharing was noted between individuals within the same source group over time. The E. coli population of a single human that had just finished antibiotic treatment was studied on a daily basis for one month. The loss of an E. coli subtype with high antibiotic resistance was observed over time, however there was a single dominant E. coli subtype that was present at every sampling event during the entire month. Geographic distinctiveness of E. coli populations was investigated by sampling four herds located in different geographical regions. We observed that E. / ABSTRACT: coli populations are not geographically distinct, but are somewhat individual-specific, as most E. coli isolates had a subtype that was found in a single individual. This study defines factors that should be considered when constructing a successful BST library, and suggests that E. coli may not be the appropriate indicator organism for BST. / System requirements: World Wide Web browser and PDF reader. / Mode of access: World Wide Web.

Because of increasing frequency of bear sightings, vehicle collisions, and nuisance incidents in coastal South Carolina, the South Carolina Department of Natural Resources is developing a comprehensive black bear management plan. However, no reliable estimates of population abundance or density are available. I used genotypes of black bears determined from hair samples collected in Lewis Ocean Bay and Carvers Bay to estimate population abundance and density. I obtained hair samples from snares during 8 weekly sampling periods in 2008 and 2009. I used Huggins closed population models to estimate abundance and spatially explicit capture- recapture models to estimate density. Based on model averaging, black bear abundance was 30 (SE = 9.3) on Carvers Bay and 42 (SE = 5.4) on Lewis Ocean Bay. Model-averaged density was 0.037 bears/km2 (SE = 0.003) for Carvers Bay. For Lewis Ocean Bay, population densities were much higher: 0.307 bears/km2 (SE = 0.025). I extrapolated the density estimates to the upper coastal region of South Carolina, using logistic regression to weight density based on similarity of the regional landscape with the 2 study areas. Predicted bear densities were low throughout the coastal region but several areas centered on more productive habitats (e.g., Carolina Bays, pocosin) and public lands (e.g., Francis Marion National Forest, Lewis Ocean Bay) had high densities. I also sampled an area in North Carolina and assessed genetic structure among the 3 areas. Based on heterozygosity, genetic distance, and genetic assignment, I found no evidence of historic or recent barriers to gene exchange among the 3 sampled populations. However, demographic connectivity may be a concern for areas such as Lewis Ocean Bay, which is surrounded by highways and development. If the goal is to maintain current black bear densities in those areas, maintaining connectivity with other habitat areas and mitigating impacts of highways would be important. The regional map of potential black bear density may be useful to identify areas that should be surveyed for occupancy or where additional studies may be conducted (e.g., Francis Marion National Forest).

Inbreeding involves the mating of closely related individuals at a higher frequency than at random; this can decrease the average fitness of populations and individuals by reducing the presence of heterozygotes and augmenting the expression of deleterious genes. Since marine invertebrates exhibit widespread dispersal, their potential for inbreeding is often disregarded. The adult sessile state of barnacles creates the potential for inbreeding as a result of necessary copulation between neighboring individuals. Depending on the degree of mixing that occurs during dispersal, closely related individuals or siblings may settle in close proximity, generating the possibility of kin aggregation and consequent inbreeding. Despite the high probability of closely related or sibling barnacles to settle contiguously, their genetic relatedness and potential for inbreeding remain relatively understudied. We examined genetic relatedness between individuals of Tetraclita rubescens at Monterey and Bodega Bay to elucidate the potential for nonrandom dispersal and subsequent inbreeding. Genetic relatedness was assessed through microsatellite analysis, and correlated with geographic distance, and size. There was a significant association between geographic distance and genetic relatedness at Bodega Bay, which may be attributed to lower densities of individuals, frequency of settlement events and oceanographic conditions. The results of this study demonstrate high genetic relatedness at small spatial scales, bolstering the potential for nonrandom dispersal and subsequent inbreeding of T. rubescens.

Bats are ecologically important around the world, partially because they eat insects. They are globally threatened by human activities. The extent of bat populations in South Asia has not been as well-monitored or researched as other parts of the world. Determining the size of a large colonial bat population is difficult, and can be aided through video footage or photographs. This study aimed to determine the population size of Tadarida plicata that inhabit the Gomantong Cave system in Borneo. Images of an evening emergence were used to determine the speed of flight, and then the number of bats to emerge from the cave through particle analysis in ImageJ. The counts, subsequent extrapolation, and comparison to previous estimates of flight speed indicated a population size approximately half the size of previous estimates, emphasizing the importance of continued monitoring. Using ImageJ particle analysis was deemed to be an effective way of estimating the number of bats in large populations.

Up until 1969 Nile Crocodiles (Crocodylus niloticus) were considered as vermin in South Africa and were actively persecuted throughout the country. In an effort to re-establish viable populations within protected areas in Zululand a restocking program was initiated in the late 1960‟s and early 1970‟s. Ndumo Game Reserve (NGR) in north eastern KwaZulu-Natal was one of the reserves involved in the restocking program and the Nile Crocodile population in the reserve increased from a minimum absolute abundance of 348 (SE ± 3.39; N = 3) in the early 1970‟s to a minimum absolute abundance of 992 (SE ± 58.70; N = 4) in the 1990‟s. However, in recent years there has been some concern that the NGR Nile Crocodile population may be on the decline, initiating the current investigation into the ecology and conservation of the NGR population. We examined changes in relative abundance using aerial survey data from 1971 – 2009. The precision and accuracy of population estimates was affected by water level, season, aircraft type and the use of different observers. A correction factor was applied to survey data and the current NGR Nile Crocodile population is estimated at an absolute abundance of 846 (± 263). Distribution data from the aerial surveys were also used to examine habitat use over the last 40 years and revealed that Nile Crocodiles were not evenly distributed in NGR and that crocodiles favoured the Phongola over the Usuthu floodplain systems. NGR is characterised by a floodplain mosaic landscape and crocodile distributions between the various habitat patches were influenced by landscape physiognomy and composition as well as connectivity and corridor quality. Anthropogenic disturbances influenced the functionality of the floodplain landscape negatively with impacts on habitat use and connectivity. To quantify the effects of environmental conditions on crocodile habitat use we conducted 40 diurnal counts at Lake Nyamithi between 2009 and 2012 and related changes in crocodile numbers here to temperature, rainfall and water level. Crocodile density in Lake Nyamithi was significantly and negatively related to average maximum ambient temperature and numbers increased in the lake over the cool, dry winter season. Water level and rainfall had strong but not significant (p >0.05) negative influence on crocodile density in Lake Nyamithi. Environmental variables influenced different size class of Nile Crocodiles differently and the density of crocodiles in the 1.5 – 2.5 m Total Length (TL) size class were significantly influenced by rainfall and average minimum monthly temperature. Movement patterns of 49 Nile Crocodiles between 202 – 472 cm total length (TL) were followed over 18 months using mark-resight (n = 36), radio (n = 10) and satellite (n = 3) telemetry. The duration of radio transmitter attachment (131 days, SE ± 11.35) was significantly related to TL and reproductive status. Satellite transmitters stopped functioning after 15 (SE ± 12.53) days and home range was calculated for 7 crocodiles ranging in size from 202 cm TL – 358 cm TL. Sub-adults (1.5 - 2.5 m TL) occupied smaller, more localized home ranges than adults (> 2.5 m TL). Home ranges overlapped extensively suggesting that territoriality, if present, did not cause Nile Crocodiles to maintain spatially discrete home ranges in NGR during the dry season. A single large scale migration event occurs every year between October and November whereby the majority of the NGR crocodile population leaves the reserve and enters the Rio Maputo floodplain in adjacent Mozambique and only return in April/May. Nesting effort (19 – 21 %) in NGR was comparable to other populations of Nile Crocodile in southern Africa. Nests are completely destroyed by floods once every 10 years and predation rates may range from 20 – 86 % per year. In addition to aerial surveys, nesting surveys and movement studies crocodiles (n = 103) were caught opportunistically to collect demographic data on population structure. The population structure of Nile Crocodiles in NGR is currently skewed towards sub-adults and adults suggesting an aging population that may decline naturally in the future. This could be due to low recruitment levels in NGR that are not able to sustain the artificially high population size created by the restocking program. Sex ratios were skewed towards females in the juvenile and sub-adult size classes and towards males in the adult size class while the overall sex ratio was even between males and females. It is predicted that the NGR Nile Crocodile population will decline in the future and that this decline should be considered as a natural process. However, the rate of decline will be accelerated at an unnatural speed and to an unnatural extent due to poaching, uncontrolled harvesting and destruction of nesting habitat within NGR. Based on the findings of the current study, management recommendations for the conservation of the combined NGR – Rio Maputo Nile Crocodile population were made. It is important that further research takes place in the Rio Maputo floodplain in Mozambique to better quantify the nesting ecology of the NGR Nile Crocodile population and to identify possible threats facing Nile Crocodiles in this region. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2013.

Spatial heterogeneity of the environment, as measured by floral diversity, composition and structure, is known to influence the distribution and diversity of invertebrates. Heterogeneity brought about by anthropogenic disturbance may be a threat to invertebrate diversity. This thesis investigates the impacts of vegetation heterogeneity at a range of scales on the diversity of invertebrate populations in modified high-altitude indigenous grasslands on the Rock and Pillar Range, Central Otago. Invertebrates were sampled in and on the edges of snow tussock fragments to assess whether species richness increased systematically with fragment area. Invertebrate composition was poorly related to fragment area, plant composition and environmental variables. Taxon richness, abundance and/or diversity for three invertebrate groups increased as fragment area decreased, perhaps reflecting an influx of species from the surrounding matrix. For snow tussock leaf invertebrates in autumn, richness and abundance were at least two times lower in tussocks exposed to the wind than those in the centre of fragments, suggesting selection of habitat may be based on microclimatic characteristics. Invertebrates were sampled from the bases of tussocks after they were clipped to simulate three levels of vertebrate grazing. Invertebrate community composition differed between sites and sampling dates but was unaffected by clipping treatment. At the higher altitude site invertebrate abundance was 1.45 times greater and Shannon-Wiener diversity (H�) 1.22 times lower than at the lower altitude site. The latter sampling date had higher abundance (2.12 times) and taxon richness (1.14 times) than the earlier date. Pitfall-trapped invertebrates in cushionfield, herbfield and snow tussock differed in community composition and often by taxon richness, abundance and diversity. Across habitats, plant composition, plant diversity and some environmental variables were correlated with invertebrate variables, but could not be separated from vegetation type. The invertebrates collected in the course of the study are listed. Four Phyla, eight Classes, 24 orders and over 300 taxa were recorded. Almost all taxa are endemic and many have limited distributions and/or are undescribed. A species list is provided with collection altitude, method and habitat type. Invertebrate assemblages from sites differing in altitude, vegetation type and level of habitat modification on the Rock and Pillar Range are compared. Sites differed in species composition and rank orders of abundance and richness. At lower elevations, invertebrate richness was at least 25% less, and standardised trap abundance at least 44% less, than that at the highest elevation. Richness and abundance of exotic invertebrates decreased with increasing altitude. This thesis highlights several points concerning the study of grassland invertebrates and heterogeneity on the Rock and Pillar Range. First, there are differences in invertebrate assemblages at a range of scales. Conserving invertebrate diversity will therefore require altitudinal sequences and different habitat types, including disturbed areas. At high elevations, tussock habitat may be disproportionately important due to its relative rarity. Second, the effects of disturbance on invertebrates were only visible at large spatial scales. Third, there is a paucity of research on New Zealand invertebrates, especially in regard to terrestrial disturbance, which has resulted in a shortfall of biological, distributional, taxonomic and ecological knowledge.

Bibliography: p. 269-279. / viii, 279 p. : ill. ; 30 cm. / Title page, contents and abstract only. The complete thesis in print form is available from the University Library. / Thesis (Ph.D.)--University of Adelaide, Dept. of Applied Mathematics, 1995

Thesis (Ph.D.)--University of Nebraska-Lincoln, 2008. / Title from title screen (site viewed Jan. 13, 2009). PDF text: xvii, 196 p. : ill. (some col.) ; 3 Mb. UMI publication number: AAT 3315313. Includes bibliographical references. Also available in microfilm and microfiche formats.