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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
51

Facial expressions and other behavioral responses to pleasant and unpleasant tastes in cats  (Felis silvestris catus)

Hanson, Michaela January 2015 (has links)
The behavior and facial expressions performed by cats have been reported to be visibly affected by the perceived taste quality of a food item. The goal of the present study was to assess how cats react to pleasant and unpleasant tastes. The facial and behavioral reactions of 13 cats to different concentrations of L-Proline and quinine monohydrochloride as well as mixtures with different concentrations of the two substances were assessed using a two-bottle preference test. The cats were videotaped during the tests and the frequency and duration of 50 different behaviors was analyzed in Noldus the Observer XT. The cats responded to tastes regarded as pleasant by having their eyes less than 50 % open for significantly longer periods of time compared to a water control. Tongue protrusions were also observed significantly more frequently when the cats sampled from a solution with a preferred taste compared to a water control. When encountering solutions of quinine monohydrochloride or mixtures containing quinine monohydrochloride the cats were observed to perform tongue protrusion gapes much more frequently compared to a water or L-Proline control. Even though the cats did not significantly differ in the number of times they licked at spouts containing the 50 mM L-Proline and 500 mM quinine monohydrochloride mixture compared to a 50 mM L-Proline, no masking effect could be confirmed as there was no increase in the acceptance of the mixture was observed. The present study suggests that the knowledge about behavioral responses to pleasant or unpleasant taste can be utilized in future studies on how cats perceive different tastes.
52

Random and rational evolution of tautomerase superfamily members : analysis and implications

Darty, Joseph Edward 10 April 2014 (has links)
P[Kappa]a is not responsible for the improved activity. Hence, stabilization of an enediolate intermediate may be important for catalysis. In the second part of this work, the Chloroflexus aurantiacus J-10-fl heterohexameric 4-OT tautomerase was employed in random and rational directed evolution studies to introduce a CaaD activity. Genetic selection and a high throughput screening assay were used to identify mutants. Genetic selection was unsuccessful due to plasmid instability in the host strain. A small mutant library in the screening assay precluded the identification of any mutants with CaaD activity. Finally, rational design using structure-function relationships was investigated and a single mutant was discovered for hh4-OT that incorporated CaaD activity into the enzyme, the [alpha]L9R hh4-OT, this mutant has been characterized kinetically and the evolutionary implications for the tautomerase superfamily are described. / text
53

Prolinases from Lactobacillus plantarum WCFS1: Cloning, Purification and Characterization of the Recombinant Enzymes

2014 May 1900 (has links)
Lactobacillus plantarum WCSF1 has two putative prolinases (PepR1 and PepR2), and they share only 48.5% amino acid sequence identity. To investigate the differences in enzymatic characters between two enzymes, the genes are cloned and expressed in E. coli using non-tagged pKK223-3 and His-tagged pET32b(+) systems. Culture conditions of overexpressed recombinant prolinases (r-PepR1 and r-PepR2) are optimized as pH7.0-7.5 LB media at 16°C with 1 mM IPTG induction. Recombinant prolinases with His-tag give higher yields and are more cost-efficient over non-tagged recombinant prolinases. After purification, these recombinant enzymes show similar hydrolysis activities towards Pro-Gly substrate, proving their nature as prolinases. Structural analyses using CD spectrum and computer modelling show that r-PepR1 and r-PepR2 share structural similarity in their secondary structure having the highest β-sheets over other components; and dynamic light scattering and gel filtration chromatography analyses indicate their quaternary structure being homotetrameric. Structural similarity can be linked to enzyme function feature. The two enzymes have the same enzymatic functionality may be due to their structural similarity. Despite for their structural similarities and the same enzymatic functionality, they show differences in their substrate specificity, optimum temperature and pH, kinetic parameters (Km and kcat values), thermal stability, and proteolysis mode. r-PepR1 has its optimal activity at 25°C pH7.5 against substrate Pro-Met, whereas r-PepR2 is most active at 30°C pH8.0 against Pro-Gly. r-PepR1 has a low thermal stability with a TM (the midpoint temperature of the unfolding transition) at 29°C, whereas r-PepR2 has a higher TM at 48°C. However, r-PepR1 is aggregated and inactivated at near physiological temperature (42°C). The catalytic mode of r-PepR1 could be a metallo-protease since its activity reduces by 38% with a metal-chelating agent EDTA; while the activity of r-PepR2 is inhibited by 47% with a serine protease inhibitor PMSF, suggesting it is a serine protease. These isozymes cooperatively and complementarily work together to hydrolyze proline-containing peptides, showing broader specificity, broader range of working pH and temperature, and higher efficiency, suggesting that the proline recycling are mediated through these two enzymes to adapt a wide rage of environmental conditions.
54

Proline biosynthesis in transgenic soybean plants.

De Ronde, Jacoba Adriana. 19 December 2013 (has links)
Plants have evolved numerous strategies for the adaptation to drought. Although many investigations reported on the potential value of proline accumulation during environmental stress, it is still unknown whether or not a constitutive higher level of proline accumulation enhances plant tolerance. Thus, it was investigated if underproduction and overproduction of proline will influence the susceptibility to drought stress in soybean plants. This was made possible with the transformation of soybean plants with an L-Δ¹-pyrroline-5-carboxylate reductase (P5CR) gene. First, an Agrobacterium-mediated vacuum infiltration transformation system, using partially germinating Carnia 2233 soybean seed, was established through the assessment of several conditions that can affect transformation efficiency with the use of β-glucuronidase reporter genes. Transformation was confirmed with PCR and Southern blot analysis and results indicated that stable transgenic soybean plants were obtained within one generation with a transformation rate of± 30%. This technique was used in the transformation of Carnia 2233 soybean seed with the P5CR gene in the antisense orientation under the control of an inducible heat shock gene promoter (IHSP). It was confirmed that the P5CR-IHSP gene construct was integrated into the soybean cells and was conserved over three generations. Physiological screening of the antisense P5CR transgenic plants in the greenhouse proved that, with activation of the promoter, an under-expression of the P5CR gene and subsequent inhibition of the accumulation of proline were experienced during drought and osmotic stress. The decline of the viability of the transgenics with prolonged drought stress, as monitored with a woodenbox screening test, is an indication that proline is needed for survival of soybean plants under drought stress conditions. The transgenic plants demonstrated a sensitive reaction in contrast to the control plants that displayed a tolerant reaction to osmotic stress in a TTC assay. The underexpression of the P5CR gene resulted in a decline protein synthesis due to proline shortage as was observed with the evaluation of the efficiency of protein synthesis. All these results suggest that a decrease in the proline level due to the antisense P5CR gene, yielded plants that are more osmotic and drought stress sensitive. Subsequently, the soybean cultivar Ibis was successfully transformed with the P5CR-IHSP construct in the sense and antisense directions in order to test the reproducibility of the transformation process and to assessed the link between the biochemical traits involved in the drought stress mechanism. Three different experiments were conducted: a mild heat and drought stress on "To" transgenic plants exploring changes in chlorophyll fluorescence transients, a mild heat stress on "T1" transgenic plants comparing proline accumulation and chlorophyll fluorescence transients and a severe drought and heat stress on the "T1" transgenic plants comparing proline accumulation NADP⁺synthesis and chlorophyll fluorescence transients. Chlorophyll fluorescence transients were successfully used as a screening method for transgenic soybean plants during this study. The sense transgenics responded to the mild stresses with a significant decrease in their electron transport, trapping and absorption compared to the antisense plants that displayed significant increases in electron transport and trapping. During the severe stress, the antisense transgenics experienced total photoinhibition indicated by the enormous loss of electron transport but the sense plants had the ability to overcome the stress as is revealed in the increase in the electron transport. It was demonstrated that although proline accumulation yielded no significant differences during the mild heat stress, the sense plants accumulated substantially more proline than the control and antisense plants during the severe heat and drought stress. It was demonstrated that proline plays an important role in the plant's response to a drought stress as well as in the recovery phase after drought, as the sense plants also had the ability to reduce the accumulated proline during the recovery period in contrast to the antisense transgenics that experienced protein degradation. The transgenics responded to a period of heat and drought stress with a reduction in NADP⁺ levels in the antisense plants and increasing levels in the sense plants. The sense plants were able to fully recover after the stress period, thus adaptation to drought may depend on different mechanisms, including the capacity to maintain high levels of proline and to regenerate them through the "reduction" of NADP⁺. It was possible to alter the drought tolerance of Ibis by transformation with antisense and sense P5CR gene constructs, which resulted in respectively more sensitive and more tolerant Ibis plants. It can be concluded that over-expression of P5CR during a drought stress resulted in higher proline levels, better photosynthetic efficiency, higher NADP⁺ production and thus a more drought tolerant plant. This study gave additional proof that a constitutively higher level of proline accumulation enhances drought tolerance in soybean. / Thesis (Ph.D.)-University of Natal, Pietermaritzburg, 2000.
55

Proline catalyzed enantioselective retro-aldol reaction

2013 December 1900 (has links)
In the Ward Group, stereoselective aldol reactions of thiopyran derived templates play an important role in polypropionate natural product syntheses. Central to this approach is the diastereo- and enantioselective synthesis of all possible aldol adducts 3 arising from tetrahydro-4H-thiopyran-4-one (1) and 1,4-dioxa-8-thiaspiro[4.5] decane-6- carboxaldehyde (2). There are four possible diastereomers of 3 indicated by the relative configurations at positions 3 and 1’ (syn or anti) and positions 1’ and 6’ (syn or anti). Up to date, the asymmetric aldol reaction of 1 with 2 catalyzed by L-proline or its tetrazole analogue 12 provides efficient access to 3,1’-anti-1’,6’-syn-3 (3-AS) without need for chromatography (>40 g scale; 75% yield, >98% ee) and 3,1’-syn-1’,6’-syn-3(3-SS) (via isomerization of 3-AS; >75% yield, 2 cycles); however, the preparation of enantiopure 3,1’-anti-1’,6’-anti-3 (3-AA) and 3,1’-anti-1’,6’-syn-3 (3-SA) still requires the use of enantiopure aldehyde 2 in a diastereoselective synthesis. Without a simple and scalable route, access to enantioenriched iterative aldol adducts and polypropionate natural products that are based on 3-AA and 3-SA skeletons are hindered. It was observed that conducting the asymmetric aldol synthesis of 3-AS on large scale gave enantioenriched 3-AA as a very minor product. This observation triggered the hypothesis of using L-proline to resolve racemic 3-AA via a retro-aldol reaction.In this thesis, the development, optimization, and application of an unprecedented L-proline catalyzed enantioselective retro-aldol reaction is described. Interesting mechanistic insights were uncovered. An unexpected isomerization process between 3-AA and 3-SA occurs in parallel with the retro-aldol process. The method was demonstrated to be a robust, flexible, and readily scalable process to access highly enantioenriched 3-AA (ee > 95%) and 3-SA (ee > 95%). To the best of our knowledge, this reaction represents the only reported enantioselective retro-aldol reaction catalyzed by L-proline.
56

The human cytochrome P-450 21-hydroxylase genes

Rodrigues, N. R. January 1987 (has links)
Deficiency of the cytochrome P-450 steroid 21-hydroxylase (21-OHase) which causes Congenital Adrenal Hyperplasia (CAH) is a monogenic autosomal recessive disorder which is linked to HLA. There are two 21-OHase genes in man, A and B, and they are mapped to the HLA class III region ~ 3 kb 3' to the complement genes C4A and C4B, respectively. Two genes encoding 21-OHase were isolated, characterized and sequenced. Both 21-OHase genes are ~ 3.3 kb in length and are split into 10 exons by nine introns. Comparison of the two genes showed that although they are highly conserved, there are three deleterious mutations in the 21-OHase A gene which cause frameshifts and introduce in phase premature termination codons. Thus the 21-OHase A gene is a pseudogene. Comparison of the 21-OHase B gene to the other cytochrome P-450 sequences revealed that although the cysteine-429 was conserved in 21-OHase, there is very little homology with other cytochrome P-450, indicating it belongs to a separate family of genes within the superfamily. Clear evidence of polymorphism in 21-OHase is apparent on comparison with other 21-OHase B sequences. There is a size polymorphism of 494 and 495 amino acids. The differing severities of 21-OHase deficiency in CAH may be due to allelic variants of the 21-OHase B gene, since in most cases the defect is not due to gene deletion (Rumsby et al., 1986). A 21-OHase B gene from a patient with CAH was characterized and sequenced. There were 13 nucleotide alterations in his single 21-OHase B gene, one of which at codon 269 caused a serine to change to a threonine residue. The G → C transversion in the 21-OHase B gene from the patient at codon 269 introduced a new NcoI restriction site into the gene. This restriction fragment length polymorphism (RFLP) was used to study other patients with CAH and normal individuals. The NcoI RFLP was found not to be confined to the 21-OHase B gene but was also present in some 21-OHase A genes. It is likely therefore that the mutation occurred in the pseudogene first and then transferred to some 21-OHase B genes.
57

Molecular mechanism of transcriptional regulation of the put regulon in Escherichia coli

Zhou, Yuzhen. January 1900 (has links)
Thesis (Ph.D.)--University of Nebraska-Lincoln, 2007. / Title from title screen (site viewed May 20, 2008). PDF text: 171 p. : ill. (some col.); 4 Mb. UMI publication number: AAT 3284263. Includes bibliographical references. Also available in microfilm and microfiche formats.
58

Interactions driving the collapse of islet amyloid polypeptide: implications for amyloid aggregation

January 2013 (has links)
abstract: Human islet amyloid polypeptide (hIAPP), also known as amylin, is a 37-residue intrinsically disordered hormone involved in glucose regulation and gastric emptying. The aggregation of hIAPP into amyloid fibrils is believed to play a causal role in type 2 diabetes. To date, not much is known about the monomeric state of hIAPP or how it undergoes an irreversible transformation from disordered peptide to insoluble aggregate. IAPP contains a highly conserved disulfide bond that restricts hIAPP(1-8) into a short ring-like structure: N_loop. Removal or chemical reduction of N_loop not only prevents cell response upon binding to the CGRP receptor, but also alters the mass per length distribution of hIAPP fibers and the kinetics of fibril formation. The mechanism by which N_loop affects hIAPP aggregation is not yet understood, but is important for rationalizing kinetics and developing potential inhibitors. By measuring end-to-end contact formation rates, Vaiana et al. showed that N_loop induces collapsed states in IAPP monomers, implying attractive interactions between N_loop and other regions of the disordered polypeptide chain . We show that in addition to being involved in intra-protein interactions, the N_loop is involved in inter-protein interactions, which lead to the formation of extremely long and stable β-turn fibers. These non-amyloid fibers are present in the 10 μM concentration range, under the same solution conditions in which hIAPP forms amyloid fibers. We discuss the effect of peptide cyclization on both intra- and inter-protein interactions, and its possible implications for aggregation. Our findings indicate a potential role of N_loop-N_loop interactions in hIAPP aggregation, which has not previously been explored. Though our findings suggest that N_loop plays an important role in the pathway of amyloid formation, other naturally occurring IAPP variants that contain this structural feature are incapable of forming amyloids. For example, hIAPP readily forms amyloid fibrils in vitro, whereas the rat variant (rIAPP), differing by six amino acids, does not. In addition to being highly soluble, rIAPP is an effective inhibitor of hIAPP fibril formation . Both of these properties have been attributed to rIAPP's three proline residues: A25P, S28P and S29P. Single proline mutants of hIAPP have also been shown to kinetically inhibit hIAPP fibril formation. Because of their intrinsic dihedral angle preferences, prolines are expected to affect conformational ensembles of intrinsically disordered proteins. The specific effect of proline substitutions on IAPP structure and dynamics has not yet been explored, as the detection of such properties is experimentally challenging due to the low molecular weight, fast reconfiguration times, and very low solubility of IAPP peptides. High-resolution techniques able to measure tertiary contact formations are needed to address this issue. We employ a nanosecond laser spectroscopy technique to measure end-to-end contact formation rates in IAPP mutants. We explore the proline substitutions in IAPP and quantify their effects in terms of intrinsic chain stiffness. We find that the three proline mutations found in rIAPP increase chain stiffness. Interestingly, we also find that residue R18 plays an important role in rIAPP's unique chain stiffness and, together with the proline residues, is a determinant for its non-amyloidogenic properties. We discuss the implications of our findings on the role of prolines in IDPs. / Dissertation/Thesis / Ph.D. Physics 2013
59

A prolinemia como um fator de severidade na infecção causada pelo Trypanosoma cruzi. / The prolinemia, as a severity factor in the infection caused by Trypanosoma cruzi.

Sandra Carla Rocha 11 August 2015 (has links)
Foi demonstrado que a L-prolina é fundamental para o metabolismo das formas intracelulares de T.cruzi e está envolvida em processos de resistência a diferentes condições de estresse. O ácido L-tiazolidina-4-carboxílico (T4C) age como inibidor competitivo do transporte de prolina para o interior do parasita, desta forma, pode-se assumir que, quando aplicado como agente terapêutico simula uma situação de hipoprolinemia no hospedeiro mamífero. Sobre esta base, propomos que a prolinemia poderia estar relacionada com a severidade da infecção pelo T. cruzi, portanto, decidimos inverter o racional e obter nesse trabalho um modelo de hiperprolinemia. Inicialmente foi estabelecido um modelo murino de hiperprolinemia transiente. Camundongos da linhagem BALB/c que foram tratados com prolina, por via intraperitonial (i.p), em 30 minutos já apresentaram concentrações plasmáticas de 1,359 ± 0,121 mM, porém, após 3 horas seus níveis plasmáticos retornaram ao normal, 0,4361 ± 0,03496. Utilizando este modelo, foi avaliado o efeito da hiperprolinemia transiente em camundongos infectados pelo T.cruzi. Em três ensaios de um total de seis foi observado um aumento significativo da parasitemia em camundongos tratados, sem nenhuma diferença na mortalidade e na carga parasitária de diversos tecidos. Essa inconsistência observada no perfil da parasitemia redirecionou os experimentos para um modelo de hiperprolinemia hereditário previamente estabelecido. Interessantemente, foram observados diminuições na parasitemia, porém, a mortalidade foi aumentada. Foi hipotetizado que, diferentemente do que acontece com a hiperprolinemia transiente, com os níveis plasmáticos aumentados de maneira estável, as formas intracelulares de T.cruzi teriam acesso ao aminoácido em quantidades e tempo maiores. No entanto, não se pode descartar como hipótese complementar, que a hiperprolinemia possa afetar a resposta imune e por sua vez, imunossuprimir ou imunoestimular o hospedeiro mamífero. Por esse motivo, avaliaram-se alguns parâmetros da resposta imune ex vivo. Ensaios ex vivo mostraram que tratamento com prolina diminui a produção de NO sob ativação por LPS, no entanto quando células peritoneais não ativadas por LPS são infectadas por T. cruzi, o tratamento com prolina não altera o perfil de NO. A expressão gênica da óxido nítrico sintase induzível (iNOS) das células peritoneais diminui quando elas são cultivadas na presença de prolina, confirmando esses resultados. Mostrou-se dessa maneira que a hiperprolinemia pode interferir com a resposta imune do hospedeiro, o que levaria a uma eventual imunossupressão. Observou-se que, tanto células peritoneais infectadas como não infectados tratadas com prolina apresentam redução de seu volume celular o que poderia ser indício de sinal apoptótico. Ensaios de infecção (ex vivo) em células peritoneais de camundongos BALB/c com tripomastigotas da cepa MJL superexpressando o transportador de prolina apresentaram aumento da taxa de infecção enquanto que as infectadas por tripomastigotas da cepa Y superexpressando o mesmo transportador de prolina apresentaram diminuição da taxa de infeçção, quando comparadas aos controles, mostrando que a reposta de redução ou aumento da taxa de infecção ao tratamento com prolina é determinada também pela cepa de T. cruzi. Análises da prolinemia em soro de pacientes com sintomas de cardiopatia chagásica severa mostraram menores níveis de prolina sérica quando comparados aos controles (pacientes não infectados). Juntos, todos esses resultados colocam a prolina como um fator de severidade na infecção pelo T. cruzi. / It was shown that L-proline is essential for the metabolism of the intracellular forms of T. cruzi and is involved in resistance to different stress conditions. L-thiazolidine-4-carboxylic acid (T4C) acts as a competitive inhibitor of the proline transport to the inside of parasite, thus it can be assumed that when T4C is applied as a therapeutic agent simulates a hipoprolinemia situation in the mammalian host. On this basis, we propose that prolinemia could be related to the severity of T. cruzi infection, then, in this work we decided to reverse the rational and obtain a hyperprolinemia model. As a starting point, it was established a mouse transient hyperprolinemia model. BALB/c mice were intraperitoneally injected with proline showed an increased proline levels in sera after 30 min (1,359 ± 0,121 mM). However, these increased levels were diminished to normal levels after 3 h (0,4361 ± 0,03496 mM). Once established this model, was initially used to evaluate the effect of transient hyperprolinemia in mice infected by T.cruzi. In three out of six experiments an increase in parasitemia but not in mortality or in tissue parasite loads was observed. In the remaining three experiments no differences were detected. These inconsistencies directed the work to the search to a previously established hereditary model of mouse hyperprolinemia model. Interestingly, in this new model, a diminished parasitemia was recorded, however, mortality was higher. From this information it was hypothesized that, differently to what happens in the transient hyperprolinemia, a permanent hyperprolinemia exposes the T. cruzi infected cells (and so, the intracellular parasites) to higher concentrations of proline as well as for longer times. In addition, it cannot be disregarded the complementary hypothesis that hyperprolinemia could be affecting the immune response and, at the same time of its action on the parasite, it could be immunosupresing or immunostimulating the mammalian host. This possibility led us to evaluate some parameters of the immune response both, in vivo and ex vivo. Ex vivo assays showed that proline-treated LPS-activated peritoneal cells had a diminished production of NO while proline-treatment of T. cruzi infected, non-LPS-activated peritoneal cells did not affect their NO production. This data showed that hyperprolinemia could interfer the immune response leading the host to an eventual immunosupresion. In addition, both, infected and non-infected macrophages had their cellular volume diminished when treated with proline, which could be attributed to the iniciation of an apoptotic process. Infection assays (ex vivo) of perioneal cells from BALB/c mice with MJL strain trypomastigotes overexpressing a proline transporter had an increased infection rate, while the same type of cells infected with Y strain trypomastigotes overexpressing the same proline transporter showed a diminution in the infection rate. These results show that changes in the infection rate as a function of intracellular proline availability depends on T. cruzi strain. The analysis of prolinemia in patients serum with symptoms of Severe Chronic Chagasic Cardiopathy showed tat proline levels were diminished in comparison to control (non-infected patients). Taken together, these results prompt proline as a factor modulating the severity of T. cruzi infection.
60

Study of mechanisms for the axonal localization of the tau protein in neurons / 神経細胞におけるタウ蛋白質軸索局在化メカニズムの研究 / シンケイ サイボウ ニオケル タウ タンパクシツ ジクサク キョクザイカ メカニズム ノ ケンキュウ

岩田 実里, Minori Iwata 22 March 2020 (has links)
微小管結合タンパク質の1つであるタウは、神経細胞の軸索に特異的に局在している。タウの軸索局在化分子機序を解明するために、外因性タウを神経細胞の発達初期に一時的に発現させ、軸索特異的に局在させる方法を構築した。この方法を用い、proline rich region 2 (PRR2)がタウの軸索局在化に重要であること、PRR2のリン酸化が軸索への移動に関与することを示唆した。またこの系の確立は局在や細胞内動態などの検討を行うことを可能にした。 / Microtubule-associated protein tau localizes specifically to neuronal axons. In order to elucidate the molecular mechanism of the axon localization of tau, we constructed an expression system for axon specific localization of exogenous tau in immature neurons in culture. Using this system, it suggested that the proline rich region 2 (PRR2) and phosphorylation of PRR2, which contains important phosphorylation sites, is critical for the localization. In the future, this experimental system will contribute greatly to the study of tau in normal and in the pathology of Alzheimer's disease. / 博士(理学) / Doctor of Philosophy in Science / 同志社大学 / Doshisha University

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