Thesis (Ph. D.)--University of Missouri--Columbia, 2003. / "May 2003." Typescript. Vita. Includes bibliographical references (leaves 139-154).

Background:  The PDZ domain is a peptide sequence of 80-90 amino acids and can be found in e.g. bacteria, animals and plants. These domains are commonly part of the cytoplasmic and membrane adapter proteins and its function are important in protein-protein interactions. The NS1 proteins of influenza A viruses play an important role in inhibiting the IFN-β production in many ways. In the C-terminus of the NS1 protein, a peptide sequence of four amino acids had been demonstrated to bind to the PDZ domain termed as PDZ binding motif (PBM). Objective:  The aim of this study is to determine whether the PBM sequence of the NS1 protein of influenza A virus plays a key roll in the expression of interferon-β. Methods:  The open reading frame of the NS1 protein was amplified and cloned into expressing vector and transfected into A549 cells along with a reporter plasmid containing ISRE promoter, driving expression of firefly luciferase. Dual luciferase reporter assay was performed to measure luciferase activity which represented expression of IFN-β. The assay was performed only once and unfortunately the result can not be trusted since the negative control showed positive value. Therefore, to understand the interaction between the PBM sequence of NS1 proteins and the production of IFN-β, further experiments are needed.

Here we report the identification of 15 potential MSP-like proteins from the P. falciparum 3D7 genome using a bioinformatics-based approach. One candidate, renamed URF1, was further characterized by cloning into the Gateway system. We were able to demonstrate expression of URF1 during the blood stage, especially the trophozoite, early and late schizont phases, by immunofluorescence on infected RBC using antisera raised in mice with an URF1 DNA vaccine. URF1 expression in the merozoite stage could not be confirmed in this study. Future co-localization and immunosorbent electron microscopy (EM) experiments would help us determine the exact localization of URF1 on the parasite before officially categorizing URF1 as a merozoite surface protein. As a whole, this research project demonstrates the success of using bioinformatics in identifying potential new MSP-like proteins found in the malaria genome. Further characterization and sequence analysis of the other 15 candidates may reveal other novel antigens expressed during the erythrocytic stage, especially in the merozoite stage. Such antigens may prove to be good vaccine candidates.

The presence of inflammation in the progression of fatty liver disease induced by fasting was determined in mink. Tumour necrosis factor alpha (TNF-?), and monocyte chemoattractant protein 1 (MCP-1) liver mRNA levels were quantified by real-time PCR. Mink fasted for 5 and 7 days had significantly higher levels of TNF-? and MCP-1 liver mRNA, compared to mink fasted for 0, 1, and 3 days. Mink fasted for 7 days, but re-fed for 28 days had the lowest mRNA levels of both TNF-?, and MCP-1 demonstrating the liver’s ability to restore homeostasis post-fasting. TNF-? mRNA levels were correlated with MCP-1 liver mRNA and liver fat percent. To confirm the physical presence of inflammation, slides stained with haematoxylin and eosin were analyzed for bile ducts resulting in no significant differences. Results indicate that elevated MCP-1 and TNF-? expression are associated with fasting induced fatty liver in mink.

Cardiovascular diseases are the number one cause of death in Western societies. Endothelial dysfunction is an early event in the pathology of atherosclerosis, which is an underlying cause in the majority of cardiovascular events. Exposure to persistent environmental pollutants, such as polychlorinated biphenyls (PCBs), is a risk factor for the development of atherosclerosis. First, we tested a hypothesis that coplanar PCBs, dioxin-like chemicals with affinity for aryl hydrocarbon receptor (AhR), can stimulate up-regulation of monocyte chemoattractant protein-1 (MCP-1), an endothelium-derived chemokine that attracts monocytes into sub-endothelial space in early stages of atherosclerosis. Coplanar PCBs 77 and 126 increased expression of MCP-1 in endothelial cells, and this effect was dependent on activation of AhR and increased levels of cytochrome P450 monoxygenases. Subsequent rise in the levels of reactive oxygen species (ROS) led to a downstream stimulation of redox-sensitive kinases and transcription factors. Lipid rafts, and particularly caveolae, are enriched in endothelial cells, and down-regulation of caveolin-1, a key structural protein of caveolae, decreases the progression of atherosclerosis. Studies using deletion of caveolin-1 in vitro and in vivo demonstrated that intact caveolae were required for up-regulation of MCP-1 and pro-inflammatory interleukin-6 (IL-6) by PCB77. Nutrition can modulate adverse outcomes of human exposure to environmental chemicals. Fish oil-derived long-chain omega-3 polyunsaturated fatty acids, such as docosahexaenoic acid (DHA, 22:6ω-3), can alleviate inflammatory responses and the risk of cardiovascular disease. Cyclopentenone metabolites produced by oxidation of DHA contribute to these protective effects. Endothelial cells were pre-treated with oxidized DHA (oxDHA), prepared by incubation of the fatty acid with a free radical generator. Subsequent up-regulation of MCP-1 by coplanar PCB77 was markedly reduced. DHA-derived cyclopentenones increased nuclear translocation and DNA binding of a transcription factor NF-E2-related factor-2 (Nrf2), as well as expression levels of its target, antioxidant enzyme NAD(P)H:quinone oxidoreductase (NQO1). This stimulation of antioxidant responses prevented ROS production and inflammatory responses induced by PCB77. These data support the concept that nutrition prevents toxicity caused by environmental pollutants; thus, nutrition and can be a sensible approach to alleviate chronic pathologies associated with these chemicals.

Heart failure represents an important cause of death in Western Countries. The pathophysiology of heart failure is mainly associated with abnormalities in intracellular calcium control. We previously showed that Egr-1 negatively regulates expression of sodium-calcium exchanger (NCX) in vivo and in vitro. Here we tested the hypothesis that Egr-1 regulates expression of calcium storage proteins in the sarco-endoplasmic reticulum (SER), calsequestrin (CSQ) and/or ER, calreticulin (CRT) directly or indirectly via Egr-1:NFAT (nuclear factor of activated T-cells) formation. Secondarily, we hypothesized that this will reduce calcium mobilization. We found that undifferentiated 1293F cells, overexpressing Egr-1, have reduced CSQ compared to control H9c2 cells. We demonstrated that Egr-1 negatively regulates CSQ but not CRT expression. The Egr-1 mediated decrease in CSQ is linked to decreased calcium availability. Repression is by a novel NAB-independent (NGFI-A binding protein) activity localized to a.a. region 1-307. We conclude that Egr-1-mediated reductions in calcium storage protein expression alter calcium availability for cardiac contraction/relaxation.

Diss. (sammanfattning) Stockholm : Karolinska institutet, 2006. / Härtill 4 uppsatser.

Thesis (Ph. D.)--Case Western Reserve University, 2006. / [School of Medicine] Department of Epidemiology and Biostatistics. Includes bibliographical references. Available online via OhioLINK's ETD Center.

Thesis (Ph. D.)--West Virginia University, 2007. / Title from document title page. Document formatted into pages; contains xv, 156 p. : ill. (some col.). Vita. Includes abstract. Includes bibliographical references (p. 112-153).

L'épigénétique joue un rôle majeur dans le développement érythrocytaire de Plasmodium falciparum, tels que variation antigénique, pathogenèse, différenciation sexuée. Jusqu'à présent, ces éléments n'ont jamais été décrits chez les sporozoïtes. Pour caractériser la régulation épigénétique au niveau des sporozoïtes de P. falciparum, nous avons étudié les principaux régulateurs épigénétiques PfHP1 (P. falciparum hétérochromatine Protein 1) ainsi que PfSET6 et PfSET7 (méthyltransférases histone lysine). J'ai établi une cartographie génomique des marques épigénétiques répressives associées à l'hétérochromatine, et actives associées à l'euchromatine. J'ai identifié un nouveau mécanisme stade-spécifique de contrôle de l'expression génique, qui réprimés plusieurs gènes codant pour des protéines exportées. Ce mécanisme repose sur une expansion d'hétérochromatine. De plus, je démontre qu'un membre de la famille des gènes var, qui code pour le facteur de virulence PfEMP1 des stades sanguins, est exprimé à la surface des sporozoïtes. Cette localisation contraste avec les stades sanguins, où PfEMP1 est transporté à la surface des érythrocytes et participe à cytoadhérence. L'ensemble de ces résultats ouvre de nouvelles questions biologiques: quels sont les facteurs qui régulent la formation d'hétérochromatine chez les sporozoïtes? Quelle est la fonction de PfEMP1 sur la surface d'un sporozoïte? Mes conclusions indiquent un rôle putatif de PfEMP1 lors de la migration des sporozoïtes. En outre, l'expression, à la surface du sporozoïte, d'un antigène polymorphique et spécifique de souche pourrait expliquer la réponse immunitaire souche-spécifique, induite par les sporozoïtes atténués. / Epigenetic mechanisms control key processes during Plasmodium falciparum blood stage development such as antigenic variation, malaria pathogenesis and sexual commitment. However, the epigenetic landscape has not been reported for the sporozoites stage. To characterize epigenetic regulation in sporozoites, we tested the major epigenetic regulators P. falciparum Heterochromatin Protein 1 (PfHP1) and the histone lysine methyltransferases (PfSET6 and PfSET7) in P. falciparum sporozoites. I obtained a reliable genome-wide occupancy data for repressive heterochromatin and active euchromatin marks. Notably, I discovered an unprecedented stage specific mechanism of silencing, which represses several hundreds of genes, encoding parasite surface exported proteins. This is based on an expansion of facultative heterochromatin boundaries in sporozoites. Moreover, I demonstrate that a single member of the polymorphic var gene family, encoding the blood stage virulence factor PfEMP1, is expressed at the surface of sporozoites. This is in contrast to blood stages where PfEMP1 is transported to the erythrocyte surface participating in cytoadhesion. Overall, my findings rise new biological questions including what are the factors that regulate heterochromatin boundaries and what is the function of a virulence-associated surface antigen in sporozoites stage. My findings point to a putative function of this adhesion molecule in sporozoites migration. Moreover, the expression of a highly polymporphic and strain-specific antigen on the surface of sporozoites might provide a molecular explanation for the strain-specific protective immune response induced by attenuated sporozoites.