This cumulative dissertation is a compilation of eight peer-reviewed, published scientific papers on the subject of two microscopic techniques of diffusion measurement, namely infrared (IR) microimaging and pulsed field gradient (PFG) NMR. The dissertation contains mainly five chapters. The first chapter introduces diffusion phenomena in general and concisely explains the importance and the current challenges of the investigation of molecular diffusion in nanoporous materials, which are the primary motivations behind the present work. To rise the challenges, it proposes an option of employing IR microimaging in parallel with PFG NMR in the measurement of the molecular diffusion. The second chapter describes the basic principles of the two diffusion measurement techniques and what they are capable of. Chapters 3 and 4 deliver convincing demonstrations of their applicability and potential in diffusion studies. Lastly, Chapter 5 concludes the present work by discussing complementary benefits of the two techniques, along with the novel application of the two-region model for assessing mass transfer in hierarchically porous materials.:Table of Contents CHAPTER 1. Introduction CHAPTER 2. Basics of diffusion measurement techniques 2.1. Introduction to infrared microscopy (IRM) 2.1.1. Working principle 2.1.2. Experimental setup 2.2. Introduction to pulsed field gradient nuclear magnetic resonance (PFG NMR) 2.2.1. Self-diffusion and propagator 2.2.2. Theory of PFG NMR CHAPTER 3. Applicability and potential of IRM • Publication 3.1. Anomaly in the chain length dependence of n-alkane diffusion in ZIF 4 metal-organic frameworks • Publication 3.2. Metal-organic framework Co-MOF-74-based host-guest composites for resistive gas sensing • Publication 3.3. Revealing the transient concentration of CO2 in a mixed-matrix membrane by IR microimaging and molecular modeling • Publication 3.4. IR microimaging of direction-dependent uptake in MFI-type crystals CHAPTER 4. Importance of PFG NMR in diffusion studies • Publication 4.1. NMR diffusometry with guest molecules in nanoporous materials • Publication 4.2. Structural characterisation of hierarchically porous silica monolith by NMR cryo-porometry and -diffusometry CHAPTER 5. Complementary benefits of IR microimaging and PFG NMR • Publication 5.1. Diffusion in nanopores: correlating experimental findings with 'first-principles' predictions • Publication 5.2. Diffusion analysis in pore hierarchies by the two-region model Bibliography Appendix A. Supporting information Appendix B. Author contributions

Pulsed field gradient (PFG) 1H NMR was used to characterize the mobility of ionic liquid cations in porous gas diffusion electrode (GDE) frameworks for metal–air electrochemical systems. The carbon GDE frameworks were produced by electrospinning. It was found that the motion of ionic liquids in the highly porous hosts is more complex than what is commonly exhibited by conventional fluids, which makes a multimodal investigation essential for an adequate description of mobility and wetting of GDEs. Observed NMR diffraction-like patterns cannot be linked to the tortuosity limit but may serve as a proxy for structural features in the fibrous material. While the observed data were interpreted using standard theoretical models, alternative explanations and causes for artifacts are discussed.

Genetic typing of Klebsiella pneumoniae is used for epidemiological referencing. In the clinical setting it can be useful in outbreak investigations, understanding transmission and managing hospital infections. Multi-drug resistant bacteria exist and proliferate either due to natural selection of clonal lineages or the transfer of mobile genetic elements, sometimes in response to antibiotic-use selective pressure. Pulsed-field gel electrophoresis (PFGE) is highly discriminatory and the gold standard typing method for the characterisation of K. pneumoniae isolates. The aim of the study was to genetically characterise K. pneumoniae isolates by PFGE and multilocus sequence typing (MLST). One hundred unrepeated ESBL-producing K. pneumoniae isolates were collected from the National Health Laboratory Service (NHLS). The PFGE was performed on a Rotaphor VI system (Biometra, Germany). Clonal representatives were further characterised by MLST. All the strains were typeable by PFGE using XbaI, which discerned multiple pulsotypes and MLST identified 10 different STs including a novel sequence type, ST1632. The diverse pulsotypes of K. pneumoniae isolates are not suggestive of clonal spread of particular strains. The MLST results further confirmed the variability among isolates tested and elucidated several STs, some of which have been identified internationally and often associated with carbapenem-resistance. Data on K. pneumoniae STs is still limited in the South African clinical setting, although the close monitoring of resistance profiles and characterisation of isolates is imperative for outbreak analysis, identification of prominent STs in clinical settings as compared to international counterparts and surveillance of expanding resistance. / Dissertation (MSc (Medical Microbiology))--University of Pretoria, 2015. / Medical Microbiology / MSc (Medical Microbiology) / Unrestricted

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ABSTRACT Few antibiotics are left that are effective against methicillin-resistant Staphylococcus aureus (MRSA) and even strains resistant to these agents have been isolated. Previous studies have identified five distinct MRSA clonotypes, which are present globally. No comprehensive national study has previously been undertaken to investigate the MRSA types in South Africa, and this study was aimed at elucidating the genotypic population structure of South African MRSA isolates. SmaI digested genomic DNA, separated by pulsed-field gel electrophoresis, was used to characterise 349 S. aureus isolates, obtained from various state and private diagnostic laboratories. PFGE results were complemented with those of spa typing and staphylococcal cassette chromosome mec (SCCmec) typing results. Two-hundred-and-five different PFGE patterns were identified, which were grouped into twenty-four clusters. Three were major lineages, containing more than 20% of the isolates with a similarity cut-off of 70%. Only thirty-seven spa types were identified (fourteen novel spa types), which clustered into six spa-Clonal Complexes after BURP analysis. SCCmec types I-IV were identified, including variants of each type. Data suggest that the Archaic clone (RSA05), oldest of the epidemic clones, represents one of the major clones in South Africa. Strains that were part of this complex (n=98 (28.2%); t064; SCCmec type I-pls) clustered together with strain E2125/ATCC BAA-38 (t051; SCCmec type I). Another major complex, RSA16 (n=90 (25.7%); t012; SCCmec type II/IIB) possessed a single-locus variant (SLV) spa type and the same or a SLV SCCmec types as EMRSA-16 (t018; SCCmec type II). The third major complex, RSA03 (n=74 (21.2%); t037; SCCmec type III/IIIE), had similar spa and SCCmec types to control strainANS46 (t037; SCCmec type III). One MRSA and twelve MSSA isolates were also identified as carrying genes for the toxin Panton-Valentine leukocidin, which was confirmed by DNA nucleotide sequencing.

The pulsed field gradient fourier transform nuclear magnetic resonance (PFG-FTNMR) method to measure translational diffusion coefficients in multicomponent systems has been applied to amphiphilic molecules forming liquid crystalline phases. By analyzing the concentration dependence of the diffusion coefficients of water and amphiphile in a micellar system of N,N-dimethyldodecy lamine oxide (DDAO) in water it was possible to conclude that the micelles formed were polydisperse in size and shape. It was also shown that solubilization of small amounts of hydrophobic molecules into the micelles induces spherical micelles of a narrow size distribution. From the magnitude of the lateral diffusion coefficient in the cubic phase of DDAO/water it was concluded that this phase is built up of bicontinous aggregates. The lipid lateral diffusion in the cubic phase of monooleoylglycerol (MO)/water has been measured. The decrease in the lateral diffusion of MO in this phase, when the water was replaced by glycerol, was ascribed to changes in viscosity in the polar region. Measurements by electron spin resonance and time-resolved fluorescence spectroscopy showed that changes in viscosity of the solvent also affected the motions in the hydrocarbon region. The diffusion coefficients of all three components in the cubic phase located in the lowwater region of the ternary system of diacylglycerol (DAG)/soybean phosphatidylcholine (SPC)/water have been determined. Conclusive evidence was provided for that this cubic phase is built up of reversed micelles containing mainly SPC in a continous matrix of mainly DAG. The effect on the phase properties of DDAO upon incorporation of the peptide gramicidin D has been investigated. It was shown that gramicidin D induces a lamellar phase at all water contents. The change in the order parameter profile of the C-2H bonds in perdeuterated DDAO upon incorporation of gramicidin D is compatible with theoretical calculations for proteins exhibiting a positive hydrophobic mismatch. A method for using the PFG FTNMR technique in measurements of the transmembrane exchange rate of small molecules in vesicular suspensions is discussed and some preliminary data is shown. / <p>Diss. (sammanfattning) Umeå : Umeå universitet, 1994, härtill 4 uppsatser</p> / digitalisering@umu

Dissertation (Ph.D.)--University of South Florida, 2006. / Title from PDF of title page. Document formatted into pages; contains 117 pages. Includes vita. Includes bibliographical references.

Technique of pulsed field gel electrophoresis (PFGE) has found widespread use in the analysis of the genome of all life organisms. It is applied to the separation of the large DNA molecules above thousands base pairs up to millions of base pairs in size, where using conventional gel electrophoresis techniques are not possible (for instance large bacterial, yeast, fungal or mammalian chromosome). Presented work was realized as a comparative analysis of genome of several carotenogenic yeasts. The conditions of isolation and analysis of chromosomal yeast DNA were optimized. A lysis of yeast cells and deproteination of DNA within agarose chops was shown as the most appropriate method for DNA isolation. Cultivation to late exponential phase (50 hours) is the most suitable to obtaining intact DNA in sufficient amount and quality. Carotenogenic yeasts undergo the random mutagenesis using alkylation reagent ethyl methanesulfonate (EMS). Genome of pigment overproducing mutants was analyzed by pulsed field gel electrophoresis and amount of carotenoids by high pressure liquid chromatography (HPLC). However, overproduction of beta-carotene was analyzed in mutant strains Rhodotorula glutinis (10.6 g/l of biomass enriched 0,34 mg/g of beta-carotene) and Cystofilobasidium capitatum (8.5 g/l of biomass enriched 0,23 mg/g of beta-carotene). Selection of mutant strains overproducing carotenoid pigments was in presented experiment series successful in almost all analyzed strains except in the case of the strain Rhodotorula aurantiaca.

Les cryo-aimants supraconducteurs sont des sources de champs magnétiques intenses, compactes et peu gourmandes en énergie. Il existe diverses méthodes d’aimantation mais seule l’aimantation par champ magnétique pulsé (PFM) permet d’obtenir des champs excitateurs élevés sans recourir à des bobines supraconductrices refroidies.Basé sur une collaboration industrielle, ce travail a été consacré dans un premier temps à la conception d’un générateur de courant pulsé compact et évolutif générant des rampes de pulse de polarité réglage pouvant atteindre 3000A.Dans un second temps, nous avons mis en place les différents systèmes permettant l’aimantation des cryo-aimants refroidis soit à 77 K, soit dans un cryostat refroidi par un cryo-générateur.Enfin, l’aimantation par pulses de champ des cryo-aimants supraconducteurs a montré la possibilité de piéger un champ magnétique de l’ordre du tesla, réversible et reproductible. Les résultats obtenus répondent aux impératifs industriels de l’étude. Ils sont très encourageants pour le développement d’un dispositif de champ magnétique réversible à base de cryo-aimants supraconducteurs pour l’instrumentation scientifique ou pour les applications électrotechniques. / Superconducting cryomagnets are high magnetic fields sources that are both compact and energy efficient. There are various magnetization technics but only the magnetization by pulsed magnetic field (PFM) results in high excitation fields, that otherwise could only be obtained with large superconducting coils.This work was done in the framework of an industrial collaboration. In a first step, a compact and innovative pulse current generator enabling the generation of pulses with a 3000 Amps maximum intensity was designed and fabricated. Secondly, different systems for the magnetization of cryo-magnets either cooled down to 77 K or cooled in a cryostat by a cryo-generator were implemented. Finally, the pulsed field magnetization of superconducting cryo-magnets has shown that reversible and reproducible magnetic field in the one Tesla range could be generated by the set up.The results obtained are consistent with the industrial goals of this study. They are very encouraging for the development of reversible magnetic field devices based on superconducting cryo-magnets and dedicated to scientific instrumentation or for electrotechnical applications.

Dans ce travail nous avons étudié des réactions chimiques sur la surface de deux métaux : le platine et l'or, en utilisant la microscopie ionique à effet de champ électrique (FIM) et la spectrométrie de masse de désorption par champ pulsé (PFDMS). En complément de ces données expérimentales, nous apportons des résultats obtenus par la théorie de la fonctionnelle de la densité (DFT). La taille et la morphologie de nos échantillons font qu’ils sont de bons modèles de grains de phase active dans un catalyseur réel. Sur le platine nous avons observé l'interaction du monoxyde d'azote. En présence d'un champ électrique, la dissociation du NO est promue, laissant sur la pointe une couche d'oxygène que l'on peut titrer par la suite avec du NO pour former du dioxyde d'azote. L'interaction de l'hydrogène avec une pointe de platine est différente en fonction de la température. A basse température (<200 K), l’hydrogène met en image la pointe avec un assombrissement de petites régions de la pointe. A partir de 200 K, l'hydrogène induit une transformation de la pointe : les faces denses s'élargissent au détriment des faces rugueuses, avec une rangée d'atomes le long des lignes de zone [100] et le pôle central passe d’une forme circulaire à une forme carrée. L'hydrogène est supposé être à l'état atomique sur la surface; sous sa forme moléculaire, il ne contribue qu'à la mise en image. C’est sous sa forme atomique qu’il contribue aux transformations observées. La réaction NO+H2 sur le platine conduit à l'observation d'instabilités cinétiques pour des pressions et températures données. Les régions d'amorçage ont été identifiées comme étant tout ensemble de sites de cran situé le long des lignes de zone [100]. L'observation de phénomènes oscillants n'est pas liée exclusivement à une morphologie de type polyédrique : il est possible d’observer ces instabilités cinétiques sur des pointes de rayon de courbure différent, ces pointes ne subissent pas nécessairement un changement de morphologie. L'analyse chimique au cours de la réaction a révélé la présence d'oxydes de surface ce qui nous a conduit à penser que la surface du catalyseur de platine doit être oxydée plutôt que de rester à l'état métallique. Une étape intermédiaire dans le mécanisme de site vacant a été proposée pour permettre de rendre compte de l'apparition de phénomènes oscillants. L’étape déterminante est la décomposition du monoxyde d’azote adsorbé à la surface. L’apport d’hydrogène atomique nécessaire à la formation d’eau n’est pas une étape lente, au contraire l’hydrogène semble être largement présent sous forme atomique. L’influence du champ électrique reste important, ce qui pourrait expliquer les différences de gammes de température auxquelles d’autres groupes et le nôtre observons des oscillations. L'étude de l'interaction du CO seul sur l'or a été motivée par l'observation de la réaction CO+O2 sur pointe d'or. Sous nos conditions expérimentales, il est possible de former des mono- et dicarbonyles d’or sous forme cationique. En présence d'un champ électrique, la formation de carbonyles d'or est promue au niveau des sites de cran de la surface. Les résultats obtenus par DFT sont concordants avec les résultats expérimentaux. A l'instar du Pt, nous avons étudié l'interaction du monoxyde d'azote sur pointe d'or. Nous avons observé la formation de protoxyde d'azote et d'un dimère de monoxyde d'azote. Le mécanisme de formation de ces espèces reste encore inconnu. Une couche d'oxygène adsorbée à la surface peut être titrée par du NO en formant du dioxyde d'azote. En présence d'oxygène seul sur une pointe d'or sans champ électrique, les spectres de masse ne révèlent que la présence d'oxygène moléculaire. En présence d'un champ électrique, il est possible de détecter de l'oxygène atomique sans toutefois avoir la formation d'un oxyde d'or. Il est possible de former de l'ozone à partir d'une pointe recouverte d'oxygène atomique en présence d'oxygène moléculaire gazeux. Les calculs par DFT nous laissent à penser que la formation du cation O3+ ne se fait pas à la surface mais à proximité. Ils montrent entre autres que le champ électrique déstabilise l'oxygène atomique, ce qui pourrait le pousser vers des régions où l'effet du champ est le moins intense (la tige de la pointe).