We quantified U removal and investigated the efficacy of uranium as a quantitative tracer of groundwater discharge in a headwater salt marsh of the Okatee River, Bluffton, SC. Determining the magnitude of U removal is important for advancing U as a tracer of paleo-oceanic conditions. Since salt marsh groundwater is typically enriched in nutrients and other biologically and chemically reactive species, quantifying groundwater discharge from marshes is critical for understanding the ability of salt marshes to modify the chemistry of important species in surface waters. We hypothesized that water-column U(VI) was removed by tidally-induced advection of surface water into permeable, anoxic salt marsh sediments, a process resulting in bacterially-mediated precipitation of insoluble U(IV)O2 and/or sorption of uranium to iron-oxides at the oxic/anoxic sediment interface. Furthermore, we suggested that hydraulic pressure gradients established by marsh-surface tidal inundation and seasonally-variable rainfall promote the discharge of salt-marsh-processed, uranium-depleted groundwater to tidal creeks, producing the surface-water U-removal signal. Groundwater and surface water data revealed non-conservative uranium behavior. We documented extensive uranium removal from shallow marsh groundwater and seasonally variable uranium removal from surface waters. These observations allowed for the calculation of seasonally-dependent salt marsh uranium removal rates. On a yearly basis, our removal rate (58 to 104 mol m-2 year-1) reemphasized the importance of anoxic coastal environments for U removal. High uranium removal, high barium concentration water observed seeping from creek banks at low tide supported our hypothesis that groundwater discharge must contribute to uranium removal documented in tidal surface waters. Average site groundwater provided an analytically reasonable endmember for explaining uranium depletion in surface water. Therefore, we used three endmember mixing models for estimating the fraction of surface water with presumed a groundwater signature. Our discharge estimates of 8 to 37 L m-2 day-1 agreed closely with previously published salt marsh values. Seasonality in discharge rates can be rationalized with appeal to seasonal patterns in observed rainfall, tidal forcing, and marsh surface bioturbation. Although more work is needed, the results of this portion of the study suggest that U may be an effective quantitative tracer of groundwater discharge from salt marshes.

This collection of research examines how changes in the sensory landscape, mediated by both odor and hydrodynamic properties, impact odor-mediated predator-prey interactions in salt marsh communities. I approached this research using an interdisciplinary framework that combined field and laboratory experimentation to address issues of scale and make connections between predator behavior and patterns of predation in the field. I explored a variety of interactions mediated by changes in the sensory landscape including; indirect effects of biotic structure on associated prey, predator responses to patches of prey with differing density and distribution, and dynamic interactions between predators and prey distributions. I found that biotic structure (oyster reefs [Crassostrea virginica]) has negative indirect effects on associated hard clam prey (Mercenaria mercenaria) through the addition of oyster reef odor cues that attract predators (blue crabs [Callinectes sapidus] and knobbed whelks [Busycon carica])and increase foraging success near the structural matrix. Variation in the structure of patch-scale prey odor plumes created by multiple prey results in predator-specific patterns of predation as a function of patch density and distribution which are mediated by differences in predator sensory ability. There is a potential negative feedback loop between blue crab predators and hard clam prey distributions; clam patches assume random within-patch distributions after exposure to blue crab predators, making the detection of patches by future blue crab predators more difficult. Sensory landscapes are also mediated by water flow, which transports prey odor plumes downstream to predators. Characterization of water flow in small-scale estuary systems indicates that values of turbulent flow parameters are highly context specific and depend on both tidal type (spring, neap, normal) and site. Wind and tidal range seem to be good predictors for wave components and turbulent components of fluctuating flow parameters, respectively, although the strength of their predictive ability is dependent on time scale. Modifications of the sensory landscape through changes in structurally-induced turbulence, mixing of individual plumes from multiple prey, and bulk velocity and turbulence characteristics need to be considered when formulating predictions as to the impact of predators on naturally occurring prey populations in the field.

As sea levels continue to rise, the projected damage that will ensue presents a great challenge for conservation and management of coastal ecosystems in Florida. Since Juncus roemerianus is a common marsh plant throughout Florida with unique growing characteristics that make it a popular restoration plant, this study implemented a 20 week greenhouse split plot experiment to examine the effects of sea level rise on J. roemerianus and ultimately determine its tolerance ranges to salinity and inundation in a high nutrient environment. Overall, salinity level and the interaction effect of salinity level and water level had the greatest effects on measured growth parameters including average mature height, maximum height, density, basal area, root length, and biomass. An inverse relationship between increasing salinity and the measured growth variables was observed with the greatest growth and survivability in 0 ppt water, survivability and reduced growth in 20 ppt water, survivability and little growth in 30 ppt water, and nearly complete senesce in 40 ppt water. This was the first laboratory study to determine the effect of 40 ppt water on J. roemerianus. Elevated water levels resulted in higher growth variables in the 20 ppt, 30 ppt, and 40 ppt treatments while inundated water levels produced higher growth variables in the 0 ppt treatment despite previous research finding inundation to have completely adverse effects on J. roemerianus. It is likely that the high nutrient environment provided for this study is the cause for this anomaly. The results of this study have major implications for the future of coastal ecosystems that are dominated by stands of J. roemerianus in South Florida and can be used in conjunction with studies on bordering marsh plants to predict shifts in the ecosystems of Florida that are responding to sea level rise scenarios. / Includes bibliography. / Thesis(M.S.)--Florida Atlantic University, 2015 / FAU Electronic Theses and Dissertations Collection

Salt marshes provide a range of ecosystem services and yet are subjected to anthropogenic impacts that alter the biogeochemical processes underlying these services. In particular, human activities may modify salt marsh greenhouse gas (carbon dioxide, methane, nitrous oxide) emissions by changing plant and microbial communities, hydrological regime, and sediment chemistry. Quantifying the effects of human impacts on greenhouse gas emissions is important for complete carbon budgets, and for effective management of salt marshes and the ecosystem services they provide. In Chapters 1 and 2, I investigate the effects of hydrology and plant invasion on greenhouse gas emissions. First, I show how the restriction and restoration history of four salt marshes influence methane flux in unpredictable ways. Despite comparable salinity, methane emissions from one partially restored marsh were 25 times higher than unimpacted reference sites 13+ years after restoration, but emissions from other restored sites were equal or lower. Next, I show that greenhouse gas emissions associated with invasive Phragmites australis are not different from those associated with native Spartina alterniflora. These Chapters demonstrate the de-coupling of greenhouse gas emissions, and carbon sequestration more generally, from ecosystem degradation and restoration. In Chapters 3 and 4, I quantify greenhouse gas fluxes and microbial community structure under precipitation changes that may occur with global climate change. In a field experiment, doubled rainfall and drought had significant transient impacts on porewater salinity following storms, and on the community structure of plants (doubled rainfall) or microbes (drought), yet greenhouse gas fluxes and other biogeochemical processes were not affected. The absence of biogeochemical change indicates functional redundancy and resistance or resilience exist in the microbial community, suggesting marshes may continue providing services as precipitation changes. In a lab experiment, rewetting intact cores to simulate tidal inundation or rainstorms produced a nitrous oxide pulse 10-20x the baseline flux rates, without changing the microbial community. A model of rewetting event frequency suggests that pulsed emissions may be responsible for the majority of marsh nitrous oxide emission. Precipitation change may increase coastal nitrous oxide emission if it causes more or stronger storms, and thus more rewetting events.

Light, medium and heavy crude oils were studied at three concentrations and with two different sediments in experimental microcosm settings to determine the ability of Spartina alterniflora and associated microbes to breakdown total extractable hydrocarbons (TEH) in the water. It was a baseline experiment designed to quantify the rates of biodegradation under relatively quiescent conditions from different crude oils at moderate doses ranging from 0-150 mg/kg soil. Upon the completion of the experiment there were several key findings: (1) The lethal dosage for Spartina alterniflora was not reached within the 90 day experiment at these dosages, and all plants survived; (2) More than 97% of the total extractable hydrocarbons (TEH) were shown to be degraded by plants and rhizosphere microorganisms within the 90- day experiment; (3) The dose of oil introduced as a slick (simulated spill) on day zero did not significantly affect the results for TEH degradation within the range of dosages from 50-150 mg/g -- these dosages could be degraded by the marsh cord grass system; (4) A sediment type which was acclimated to oil for several months and one which was non-acclimated did not show significantly different results for TEH degradation in the microcosms -- both sediment systems resulted in TEH degradation over the 90-day experiment; and (5) A mathematical model was developed which simulated experiment results quite closely including TEH diffusion from the crude oil slick into the water and subsequent biodegradation.

Herbivore abundances are determined by a set of interacting factors that vary among different habitat types. Specifically, herbivore abundances in monocultures and polycultures may be governed by the same set of factors but with varying influences in the different habitats. In addition, monophagous and polyphagous herbivores may respond differently to the same set of influencing factors. I examined several abiotic and biotic factors in manipulated monocultures and polycultures of Borrichia frutescens in a west central Florida salt marsh. The experimental plots differed in both plant diversity and aboveground habitat structure to see how each component of diversity contributed to variability in the abiotic and biotic factors and how those factors were related to differences in herbivore abundances. The monoculture treatment involved clipping all above ground non-host plant material to achieve a host plant monoculture. The polyculture treatments involved pinning all non-host plant material to achieve a polyculture with reduced above ground habitat structure. The second polyculture treatment was a control in which the naturally diverse plots were unmanipulated. Two monophagous and one polyphagous herbivores were chosen for this study because of their abundance and availability in the field. The two monophagous herbivores on the host plant Borrichia frutescens were Pissonotus quadripustulatus (Homoptera:Delphacidae) and Asphondylia borrichiae (Diptera: Cecidomyiidae) both of which have been well studied in the field where the current experiment took place. The polyphagous herbivore was Cyarda acutissima (Homoptera: Flatidae), a poorly known invasive from Cuba. Soil salinity and host plant leaf nitrogen content were the abiotic factors measured. Herbivore abundances, percent egg and gall parasitism by parasitoids, spider abundances on host plant stems and ground spider abundances were the biotic factors measured. Both salinity and host plant leaf nitrogen were significantly different among the different treatments with clipped plots having the highest salinity and leaf nitrogen content. Population densities of both of the monophagous herbivores were not significantly different between treatments. The polyphagous herbivore had significantly higher abundances in the pinned and control plots than in the clipped plots. Stem spider abundances were not significantly different among treatments. Ground spiders, however, were significantly more abundant in control and pinned plots than clipped plots. Parasitism of both monophagous herbivores was not significantly different between treatments but was generally higher in the control plots. The results suggest that for monophagous herbivores bottom-up and top-down factors act antagonistically in monocultures but for the polyphagous herbivore, the presence of multiple host plants is more influential in diverse plots even given the higher abundances of generalist predators.

Fixed nitrogen is important as a nutrient for organic matter formation and as an electron donor (nitrification) and acceptor (denitrification) for energy generation, but it is scarcely available in aquatic systems. Nitrification oxidizes ammonium to nitrite and nitrate. Denitrification uses these fixed species to form dinitrogen gas. The classic understanding of the nitrogen cycle requires dissolved oxygen for nitrification and assumes denitrification reduces nitrate to dinitrogen through various intermediates in anaerobic conditions. The global nitrogen budget is imbalanced with more marine denitrification measrued than previously estimated in the classic nitrogen cycle, suggesting alternative anaerobic nitrification and denitrification pathways exist. One alternative denitrification pathway is anammox, which directly oxidizes ammonium to dinitrogen with nitrite as the electron acceptor. Other alternative pathways for both nitrification and denitrification involve redox metals as catalysts. Manganese-catalyzed anaerobic nitrification and denitrification are thermodynamically favorable at neutral pH. However, experimental evidence for these processes is still lacking. This investigation seeks to uncover evidence of manganese-catalyzed nitrification and denitrification in saltmarsh sediments. Batch reactors with anaerobic sediment slurries from a saltmarsh in coastal Georgia were incubated in the presence and absence of colloidal manganese oxides and isotope-labeled ammonium and nitrate to trace dinitrogen formation. Results show that denitrification is more prominent in the manganese-treated reactors and that the classic denitrification pathway may not be substantial in shallow saltmarsh sediments. These data indicate that anammox and/or manganese-coupled denitrification are major contributors to the removal of fixed nitrogen. Ammonium removal in the manganese-treated reactors is accompanied by a high nitrite production compared to the nitrogen-only treatment, indicating manganese-coupled denitrification exists and/or anammox is promoted in the presence of manganese. Primary productivity is generally high in saltmarshes, but oxygen penetrates less than a few millimeters in the sediment. These observations suggest that oxygenic nitrification does not fuel denitrification below the sediment-water interface. The data show that manganese may play a role in the formation of nitrite and nitrate in oxygen-limited sediments.

Eutrophication, particularly due to nitrogen (N) and phosphorus (P) input, has been massively altered by anthropogenic activities. Thus it is important to understand the impact on salt marsh plants; however studies on salt marsh plants within Galveston Bay, Texas are limited. In this study, the effects of repeated nutrient additions in monospecific plots of Spartina alterniflora, Batis maritima¸ and Salicornia virginica as well as mixed plots of B. maritima and S. virginica were studied over 15 months. Results showed that nutrient loading led to an increase in height, biomass, growth rate and percent nitrogen (N) within all three species studied, but were species specific more than dose dependent. Nitrogen content in leaves had a positive correlation with P content in leaves but a negative correlation with carbon (C) content. Nutrient loading lead to a significant increase in total chlorophyll in the fertilized plots of S. alterniflora and S. virginica one month into the study. Nutrient addition to two succulent species, B. maritima and S. virginica in mixed plots did not reveal a distinct superior competitor within the 15 month study in terms of growth and nutrient use efficiencies; however using the maximum growth rates of the monospecific plots, the Monod model was used to determine which species would dominate at high nutrient loads. Based on height data S. alterniflora would dominate, while B. maritima would dominate according to the Monod model based on biomass.

Understanding the salt marsh ecosystem in the Guadalupe Estuary is needed because wetlands in this system support the endangered whooping crane (Grus americana). The marsh plant research and monitoring described herein were based in the salt marshes at Aransas National Wildlife Refuge (ANWR), which are utilized by the cranes each winter. Past research indicates that the Carolina wolfberry (Lycium carolinianum) contributes 21-52% of crane energy intake early in the wintering period (Chavez 1996). Beginning in Fall 2003, vegetation transects were sampled along an estuarine gradient at ANWR. Species diversity and composition was similar at the three sites, with all sites containing the same 6-7 common species. While Spartina alterniflora is only a minor part of this vegetation community, it dominates the few low inter-tidal, fringe areas present. Species composition exhibited little variability from Year 1 to Year 2 of the study. Densities and biomass of L. carolinianum were not significantly different between sites or years. L. carolinianum, while important to salt marsh ecology, accounts for only a small portion of the overall productivity. Based on correlation coefficients, L. carolinianum was found in association with some of the common species in the vegetation community, indicating that its growth and survival requirements are typical to the salt marshes at ANWR. Also beginning in Fall 2003, I repeatedly sampled L. carolinianum in permanent plots along the estuarine gradient. L. carolinianum exhibits strong temporal patterns. Leaf production peaked in early spring and again just prior to peak berry abundance. Flowering of L. carolinianum occurred in October and November. Peak berry abundance coincided with the cranes’ arrival in late October and early November. Berry production occurred in October, November, and December; berries were virtually non-existent in the marshes for the remainder of the year. Stepwise regression showed stem diameter alone was a good estimator of aboveground biomass of this species in ANWR marshes, accounting for 94% of the variability (p<0.001). Changes in aboveground biomass followed no distinct patterns in the year of monitoring, perhaps due to the woody stem of the plant. Spatial patterns in L. carolinianum were not explained by water quality parameters alone; it is suggested that soil properties may help to account for the spatial variability.

Unclear predictions surrounding climate change, associated sea-level rise and potential impacts upon coastal environments have placed an emphasis on the importance of sea-level change. Past sea-level fluctuations have been measured using biological and geomorphological forms of evidence. One such biological proxy is salt-marsh foraminifera, which have been used as a high-resolution indicator of past sea-level change, based on the assumption that surface foraminiferal assemblages are similar in composition to buried fossil foraminifera. In South Africa, there is ongoing research seeking to produce high-resolution records of sealevel change, however foraminifera remain an underutilized source of proxy evidence. This research applies salt-marsh foraminifera as precise indicators of relative sea-level change at Kariega Estuary on the Eastern Cape coastline of South Africa. Distributions of modern foraminiferal assemblages were investigated, revealing vertical zonation across the intertidal zone. The foraminiferal and marsh vegetation zones were in part similar and overlapped to a certain extent, identifying three zones; high, low and tidal flats. This suggested foraminiferal distribution is a direct function of elevation relative to tidal fluctuation. A 94 cm core consisting of peat, sand and clay sediments was extracted from the salt marsh. A chronological framework for the core was based on five AMS radiocarbon age determinations of both bulk sediment and shell fragment samples placing the record within the last 1500 years Before Present (BP). The basal shell age was a clear outlier to all bulk sediment ages, possibly as a result of shell recrystallisation. The bulk sediment age determinations suggested two possible age reversals, potentially linked to sedimentary hiatus or contamination. These inconsistencies in the chronology were best viewed as separate age models. The core was analysed at a high resolution, whereby fossil foraminifera were extracted every 2 cm’s down the core. A transfer function was applied to calculate the former elevation at which each core sample once existed, to produce a relative sea-level reconstruction. The reconstruction was related to the age models to produce two possible sea-level curve scenarios. Reconstructed curves from both scenarios depict a 0.5 m (±0.16 m) sealevel highstand at 1500 cal years BP followed by a lowstand of -0.6 m (±0.03 m). Scenario One reached its lowest recorded sea-level between 600 cal years BP and 500 cal years BP and then fluctuated below present day levels. Scenario Two reached its lowest recorded sea-level around 1200 cal years BP, followed by low amplitude fluctuations and a relatively stable period from 100 cal years BP till the present day. The 1500 cal years BP highstand recorded for both scenarios correlates well with existing palaeoenvironmental literature from the southern African coastline. Chronological limitations associated with the remainder of the record hinder inter-comparison with previous studies. The outcomes of this research suggest that intertidal saltmarsh foraminifera demonstrate enormous potential for the high-resolution reconstruction of relative sealevel change in the South African context. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2013.