Small mammals are a keystone guild in arid ecosystems; often exhibiting top-down control of the diversity and structure of plant communities. However, changing climate, shifting fire regimes, and the invasion of exotic plants are modifying the structure of arid systems. Environmental changes in these arid systems are likely altering small mammal communities, and therefore, their ecological role. We examined two aspects of the community composition of small mammals in the Great Basin: changes in community composition since large scale sampling of the region began in 1930, and the current population of a sensitive species of small mammal, the dark kangaroo mouse (Microdipodops megacephalus). In Chapter 1, we compared diversity and composition of present day small mammal communities to communities sampled between the years of 1930 and 1980. We sampled 234 historical locations across the eastern Great Basin region during the summers of 2014 and 2015. Our results indicated that diversity, richness, and evenness of small mammals in the Great Basin have declined significantly over the last century (P=0.002, P=0.03, P=0.002). The relative abundance of generalist species has increased, while specialist species have declined (P<0.001, P<0.001). Also, community composition at each site has changed significantly over the past century. Alterations in the community structure of small mammals may have cascading implications for the future of the Great Basin ecoregion. In Chapter 2, we conducted a region-wide survey for the dark kangaroo mouse in western Utah. Four teams sampled 232 locations across western Utah during the summers of 2014-2015. Of the 232 sites sampled, only 5 sites resulted in dark kangaroo mouse captures, totaling 15 individuals. These results could indicate a state-wide population decline for this species, both compared to historic population levels and to the populations surveyed less than ten years ago. The rapid decline may be a result of habitat degradation associated with invasive plant species and increasing fire frequency, the effects of which are exacerbated by the dark kangaroo mouse's life history as an ecological specialist. Unless large-scale habitat restoration and preservation is conducted for remaining populations, it is likely the dark kangaroo mouse will continue to decline within the state.

I examined the effect of sugarcane plantations on small mammal communities at 3 sites in the Lowveld of Swaziland during the dry and wet seasons of 2008. I evaluated changes in species abundance and community parameters in relation to distance to the interface, as well as the relationship between small mammal communities and environmental variables. I used pitfall arrays and Sherman live traps to sample small mammals along 9 traplines at the land-use interface and on a gradient extending 375 m into each land-use. I used point-centered-quarter, range pole, and line-transect sampling to characterize plant community structure. Two generalist small mammal species had increased abundance as distance into the sugarcane increased. Two species with wide geographic ranges appeared to select areas within 75 m of the interface. Four species with restricted habitat tolerances or diets were negatively affected by sugarcane, as was 1 species that selects for low ground cover. Two species may have avoided the interface. For the majority of species in the Lowveld, sugarcane does not provide habitat. Sugarcane monocultures > 375 m in width may form a barrier to movement of small mammal species. Species richness and diversity significantly decreased at the interface of 2 sites, however, 1 site had increased diversity associated with the interface. My analysis indicated a difference in community composition between the 2 land-uses and differences between the farthest interior conservation area (375 m)-interface (0 m) and the farthest interior sugarcane (375 m). There was no difference in community composition between seasons or distances within the conservation area. The farthest interior sugarcane trapline had distinctness from other traplines within the sugarcane, and may be of importance for minimizing the effects of habitat fragmentation in lowveld savanna. The effects of sugarcane did not extend into adjoining natural vegetation. My results indicated grass biomass, litter depth and shrub density played important roles in structuring the communities. Between sites, variation in community structure attributable to the sugarcane interface varied. The site with poorest vegetative cover had the highest relative importance of distance to the interface. One species (Steatomys pratensis) was negatively affected by distance to the interface.

abstract: Human recreation on rangelands may negatively impact wildlife populations. Among those activities, off-road vehicle (ORV) recreation carries the potential for broad ecological consequences. A study was undertaken to assess the impacts of ORV on rodents in Arizona Uplands Sonoran Desert. Between the months of February and September 2010, rodents were trapped at 6 ORV and 6 non-ORV sites in Tonto National Forest, AZ. I hypothesized that rodent abundance and species richness are negatively affected by ORV use. Rodent abundances were estimated using capture-mark-recapture methodology. Species richness was not correlated with ORV use. Although abundance of Peromyscus eremicus and Neotoma albigula declined as ORV use increased, abundance of Dipodomys merriami increased. Abundance of Chaetodipus baileyi was not correlated with ORV use. Other factors measured were percent ground cover, percent shrub cover, and species-specific shrub cover percentages. Total shrub cover, Opuntia spp., and Parkinsonia microphylla each decreased as ORV use increased. Results suggest that ORV use negatively affects rodent habitats in Arizona Uplands Sonoran Desert, leading to declining abundance in some species. Management strategies should mitigate ORV related habitat destruction to protect vulnerable populations. / Dissertation/Thesis / M.S. Applied Biological Sciences 2012

This research assesses the status of the golden mouse (Ochrotomys nuttalli) in Florida by taking a multi-pronged approach. Geographic Information Systems (GIS) was used to understand the distribution of habitats and occurrence records for this species within the state. Presence-absence trapping occurred at 13 study sites to determine if historic southern periphery populations were still occupied, gauge if more central populations were being maintained, and document golden mice in previously unrecorded areas. In addition, surveys for O. nuttalli took place at regular intervals at the USF Ecological Research Area to understand how populations of this species fluctuate over time and ensure that individuals could be caught during the months when statewide trapping was occurring. Trapping data from all 14 sites were combined to determine a level of confidence for absences at each site which did not yield a golden mouse capture. Finally, I determined the relative abundance of golden mice relative to other small mammal species caught. Locality records for this species align closely with the distribution of hardwood-containing habitats in Florida. The distribution of O. nuttalli is not continuous across Florida and becomes increasingly patchy near the southern range periphery of this species. In south-central Florida, populations are restricted to regions where hardwoods extend south along one of three upland ridges. Golden mice were determined to be present in the vicinity of the southernmost historic sites on each of these ridges. Ochrotomys nuttalli were captured at six of the 13 sites surveyed. At the USF Ecological Research Area, O. nuttalli were captured in all months surveyed although abundances remained relatively low from October through January and then increased from February through May. At study sites which did not catch a golden mouse, 78.6 to 100% of the trapping periods which successfully caught a golden mouse had done so by the effort levels invested at these absent sites. Ochrotomys nuttalli was the fourth most abundant of 12 species captured, but several of the species caught less frequently than golden mice are non-native or too large to have their true abundance reflected by these trapping methods.

My work focused on the study of road effects and mitigation of negative impacts of roads on wildlife. Two different studies were conducted on Interstate 15, in southern Utah. My first study reported on road effects on small mammal communities. The results suggested that overall, there was no clear effect on small mammal populations relative to distance from the road. Most small mammal species did not appear to be negatively affected by the presence of the road. Instead, the road seemed to have either a neutral or a positive effect. The abundance and diversity of small mammals responded more markedly to microhabitat than to the presence of the highway. I suggest that other factors such as water runoff during rainy periods may be responsible for the detected patterns by increasing primary productivity in areas close to the road. I conclude that roads may often provide favorable micro-habitat in the desert landscape for many small mammals and that the disturbance caused by the highway use (e.g., noise, road surface vibration) seemed to have a negligible effect on these organisms . My second study examined the effectiveness of a mitigation strategy to reduce mule deer (Odocoileus hemionus) road mortality. Mitigation included exclusion fencing, earthen escape ramps, and underpass crossing structures . Results comparing mortality data before and after the mitigation showed 76-96% reductions of deer vehicle collisions. There was no evidence that the mitigation caused "end-of-the-fence" problems, i.e., higher mortality at the ends of the exclusion fencing . Results from underpass camera monitoring showed an increasing deer use of the underpasses over time. The volume of crossings recorded on new underpass structures approached the volume of crossings observed in a 20-year-old control underpass. My results suggest that human use and location of structures influenced deer use of underpasses. Overall results show that the mitigation strategy was effective and has reduced the number of deer-vehicle accidents while allowing easier wildlife movement across the landscape. I presented future maintenance recommendations to assure a long-term success for this strategy.

Sagebrush shrubsteppe ecosystems have increasingly garnered attention as an endangered ecosystem. Ninety nine percent of all sagebrush ecosystems are thought to have been impacted by humans, and over 50% of grassland and shrubsteppe species are believed to be in decline. Most of the research on sagebrush ecosystems has been conducted at lower elevations and in large expanses of sagebrush. A considerable amount of sagebrush is found at higher elevations, often in meadows found within a forest matrix. The role of this high-elevation habitat is poorly understood. We conducted bird, small mammal, vegetation, and soil surveys in sagebrush-dominated mountain meadows within the Wasatch-Cache National Forest in northeastern Utah. Meadows ranged from 0.6 to 782 hectares in size and included an impressive list of associated plant species. We detected two sagebrush-obligate species and numerous shrubsteppe-associated species. Each species appears to respond to different habitat characteristics, but all species that showed a significant relationship with meadow size were more likely to occur in larger meadows. Many species showed no relationship with size, suggesting that while larger meadows were preferred by some species, small meadows could also play an important role as habitat. While sagebrush-dominated mountain meadows were important for some species, we also failed to detect a number of species of interest. In particular, Sage Thrasher, Sage Sparrow, and pygmy rabbit were not found within the study area. North American Breeding Bird data suggests that Sage Thrashers can be found nearby. It is likely that these birds are only found in large expanses, and none of our meadows were large enough to support them. Sagebrush-dominated mountain meadows appear to be an important supplement to large expanses of sagebrush shrubsteppe habitat, but are not substitutable for all species.

Successful recovery of the federally threatened southeastern beach mouse (Peromyscus polionotus niveiventris) depends in part on an understanding of their habitat requirements. I studied habitat use by beach mice at Cape Canaveral Air Force Station, Florida from March 2005 until March 2006. I livetrapped six grids, three on coastal dunes and three within scrub located inland from the coast. On each grid and trap station, I quantified the extent of bare ground, woody vegetation, non-woody vegetation, height of vegetation, and percentage of coarse sand in the surface soil. I assessed trap success relative to these habitat variables using linear and multiple regression, correlation, and ordination. Significantly higher numbers of mice were captured in the scrub habitat relative to the coastal habitat. Linear regression of trap success against the habitat variables did not reveal any significant relationships at the level of grids. A non-metric multidimensional scaling model was designed to capture the vegetation heterogeneity at the trapping sites and clarify the results. This methodology identified a predominantly dune and predominately scrub cluster of trap sites. A bubble plot showed higher densities of beach mice using the scrub habitat types. These results suggest beach mice are selecting for those habitat variables defined by the ordination: higher vegetation height, more woody vegetation types, less bare ground, and less heterogeneity.

No description available.

I conducted surveys of amphibian, reptile, and small mammal communities surrounding 4 isolated, upland and 6 stream-connected temporary wetlands on Tombigbee National Forest and Noxubee National Wildlife Refuge in north Mississippi from May 2001 - March 2006. Trap captures yielded 17 amphibian species (n = 11,142), 21 reptile species (n = 541), and 10 small mammal species (n = 472). Upland pools supported greater diversity of Ambystomatid salamanders, anurans, lizards, and mice (Peromyscus spp.), than floodplain pools. Factors including landscape position of pools, proximity to alternate water sources, and barriers to dispersal potentially influenced faunal communities of temporary wetlands. Infrared-triggered cameras were used to monitor mammalian activity surrounding ephemeral wetlands to determine potential depredation of pitfall traps. Raccoons (Procyon lotor) accounted for most images (35% total images). I assessed relative effectiveness of sampling techniques to capture and retain herpetiles in presence of depredation. I tested pitfall trap, funnel trap, and pitfall trap combined with exclusion cover along driftence arrays. Overall, pitfall traps of both designs produced more captures than funnels, and excluded-pitfalls yielded greater captures than un-excluded pitfalls for most amphibians. Overall mortality rates were <2% of total captures with anurans accounting for most (63.30%) mortality. I submit that in long-term studies, pitfall traps with exclusion are prudent to limit sampling bias and mortality occurring with depredation of captured herpetofauna. During trapping, pit-traps of both designs yielded incidental captures of small mammals. Capture rates for small mammals were similar in un-excluded pitfall traps and excluded pitfall traps. Southern short-tailed shrews (Blarina carolinensis) and mice accounted for 93% of total captures and suffered 76% and 52% mortality, respectively, potentially due to exposure, starvation, flooding, and/or depredation. Additionally, one species listed as rare in Mississippi was captured during herpetofaunal surveys, oldfield mouse (Peromyscus polionotus). Due to potential impact of pitfall trapping on small mammals, I recommend that researchers either alter trapping methods to address non-target hazards (frequency of checking traps, providing shelter) or work cooperatively using an integrated survey approach for herpetiles and small mammals to limit trap mortality.

Hypogeous fungi perform various functions in the forest ecosystems, they form the mycorrhizal relationship with plants and serve as the food source of some animals. Main aims of this dissertation were to ascertain the diversity and distribution of hypogeous fungi in Lithuania, to compare the communities of hypogeous and epigeous mycorrhizal fungi, and to explore the composition of fungi in small mammal diet. Using various research methods (an analysis of the literature data, the critical examination of the herbarium specimens, the search of the fruit-bodies by raking the soil, an examination of the fecal pellets of small mammals) in total 29 species of hypogeous fungi have been ascertained in Lithuania. The taxonomic structure, distribution and fructification phenology of hypogeous fungi has been analysed. The data on the structure and dynamics of communities of hypogeous and epigeous mycorrhizal fungi in spruce, oak and mixed tree stands were presented. The influence of abiotic and biotic factors on the species composition and fructification of fungi was assessed. The peculiarities of small mammal mycophagy in different tree stands were described. / Požeminiai grybai atlieka įvairias funkcijas miško ekosistemose, sudaro mikorizes su augalais ir yra kai kurių gyvūnų maisto šaltinis. Disertacinio darbo pagrindiniai tikslai buvo išaiškinti Lietuvos požeminių grybų rūšių įvairovę ir paplitimą, palyginti mikorizinių požeminių ir antžeminių grybų bendrijas, išaiškinti grybų sudėtį smulkiųjų žinduolių maisto racione. Pritaikius skirtingus tyrimo metodus (literatūros duomenų analizę, kritišką herbariuminių pavyzdžių tyrimą, grybų vaisiakūnių paiešką grėbliukais suardytame dirvožemyje, smulkiųjų žinduolių ekskrementų tyrimą), nustatyta, kad dabar Lietuvoje žinomos 29 požeminių grybų rūšys. Išnagrinėta požeminių grybų taksonominė struktūra, paplitimas ir fruktifikacijos fenologija. Pateikti duomenys apie požeminių ir antžeminių mikorizinių makromicetų bendrijų struktūrą ir dinamiką eglynuose, ąžuolyne ir mišriame medyne. Įvertinta abiotinių ir biotinių veiksnių įtaka grybų rūšių sudėčiai ir fruktifikacijai. Išnagrinėti kai kurių smulkiųjų žinduolių mikofagijos ypatumai skirtingos sudėties medynuose.