La symbiose légumineuse/rhizobium résulte en la formation d’un nouvel organe racinaire, le nodule, au sein duquel une induction coordonnée et massive de milliers de gènes a lieu. Plusieurs gènes contrôlant la méthylation de l’ADN sont régulés de façon spatiale au sein des nodules de Medicago truncatula, dont notamment un gène codant pour une déméthylase, DEMETER (DME), fortement exprimé dans la zone de différenciation. Ici, nous montrons que MtDME est essentiel pour le développement du nodule et qu’il régule l’expression de 1425 gènes, dont certains essentiels pour la différenciation des cellules de plantes et des bactéries. Une approche de séquençage bisulfite couplée à une capture génomique nous a permis d’identifier 474 régions qui sont différentiellement méthylées au cours du développement nodulaire, comportant notamment des gènes codant pour des peptides NCRs (Nodule-specific Cysteine-Rich). La diminution de l’expression de MtDME par ARN interférant mène à l’hyperméthylation et à la down-régulation de 400 gènes, la plupart d’entre eux étant associés à la différenciation du nodule. Une reprogrammation massive de l’expression génique via la déméthylation de l’ADN représente donc un nouveau mécanisme épigénétique qui contrôle une étape clé de l’organogenèse des nodules indéterminés durant l’interaction symbiotique. / The legume-Rhizobium symbiosis leads to the formation a new organ, the root nodule, involving coordinated and massive induction of specific genes. Several genes controlling DNA methylation are spatially regulated within the Medicago truncatula nodule, with notably a demethylase gene, DEMETER (DME), mostly expressed in the differentiation zone. Here, we show that MtDME is essential for nodule development and regulates the expression of 1425 genes, certain critical for plant and bacterial cell differentiation. Bisulphite sequencing coupled to genomic capture enabled the identification of 474 regions that are differentially methylated during nodule development, including notably Nodule-specific Cysteine-Rich peptide genes. Decreasing DME expression by RNA interference led to hypermethylation and concomitant downregulation of 400 genes, most of them associated with nodule differentiation. Massive reprogramming of gene expression through DNA de-methylation is a new epigenetic mechanism controlling a key stage of indeterminate nodule organogenesis during symbiotic interactions.

Mutualistic interactions between species are balanced on a delicate scale of net benefits to both interacting partners. The dynamics of such interactions could change depending on the context in which these interactions occur. One of the most well-studied models for interspecies mutualisms are myrmecophytic systems, also known as ant-plant systems, where the host plant (myrmecophyte) provides shelter (domatia), solely or along with food resources, for ant partners, while the domatia-resident ants intensively patrol and protect the host plant from herbivory. In some cases, nutrient flux has also been reported from the ant-derived debris in the domatia to the host plant. Such mutualisms are often vulnerable to exploitation by non-mutualist organisms or interlopers such as non-protective ants and other invertebrates that use the plant rewards without any returns. Since provision of domatia and food imposes costs on the host plants, the trajectory of evolution in such cases where protection is partial or absent needs investigation to understand the evolution of myrmecophytism. In this thesis, we investigate the possibility of evolution of myrmecophytism in the absence of universal protection by partner ants, using the unique semi-myrmecophyte (domatia are not expressed in all individuals of the species) Humboldtia brunonis as the study model. H. brunonis is endemic to the tropical wet evergreen forests of the Western Ghats of India. Being locally abundant in its distribution range, this plant species has also been used in characterising forest types in the Western Ghats. H. brunonis provides domatia (modified stem internodes) and food for ants in the form of extrafloral nectar (EFN) on leaves and bracts of floral buds in all individuals. Each domatium has a self-opening slit, which could have led to the domatia being accessed and inhabited by numerous ants and other non-ant invertebrates throughout its distribution range. Of these, only one ant species, Technomyrmex albipes, has been reported to be significantly protective against herbivores, and the protection received by the plant is reported to be restricted only to one site where T. albipes is most abundant. In the light of the above, the possible explanation for continued expression of rewards (domatia as well as EFN) in the absence of universal protection was investigated. Chapter 1: Introduction This chapter starts with a brief history of the concept of mutualism, evolution and maintenance of mutualism, and trophic mutualism amongst organisms in general. This is followed by a description of ant–plant mutualisms, and the various interactions that drive the interaction in such systems, with a more detailed emphasis on trophic mutualism in ant-plants, and stable isotope analysis as a technique that is used to study trophic mutualism in ant-plants. The study system, Humboldtia brunonis is introduced, and all the studies on this system preceding this current thesis are discussed in the light of findings in other ant-plant systems. Lastly, the objectives of the thesis are briefly introduced as separate chapters. Chapter 2: Context dependency of rewards and services in an Indian ant–plant interaction: southern sites favour the mutualism between plants and ants (published in Journal of Tropical Ecology) Earlier studies on the H. brunonis system have shown that there is geographic variation in the occupancy of the domatia, with domatia in the northern part of the H. brunonis range being dominantly occupied by an arboreal earthworm species, while domatia in the south are mostly occupied by ants, especially the sole protective ant T. albipes. Further, it has been reported that herbivory is significantly reduced in the presence of ants in the south. In the present study, conducted at 5 sites spanning the distribution range of H. brunonis, we observed that there is a geographic variation in various ant-related plant traits such as abundance of domatia-bearing individuals, number of nectaries per leaf, size of nectaries, and volume and composition of the EFN, with a clear north–south increasing gradient. However, strong protection mutualism was observed only at one site in the south where herbivory pressure was highest. By comparing our results with earlier findings, we show that in addition to geographic variation, there is also temporal variation in the strength of protection mutualism, and that protection mutualism in this system is context-dependent. These results provide new perspectives on the evolution of myrmecophytism. Chapter 3: Leaf expansion and foliar extrafloral nectar as defence strategies in a paleotropical ant-plant Humboldtia brunonis (Fabaceae) (a section of this chapter is submitted to Biotropica) Despite the absence of universal protection against herbivory, H. brunonis plants constitutively secrete EFN and domatia. We therefore explored other non-chemical defences in this system, and investigated possible explanations for the continued reward production. We observed rapid rate of leaf expansion during the early and most vulnerable phase of leaf phenology, and propose this as a strategy to escape herbivory. The young leaves are also subject to being infested by phloem-feeding Hemiptera, but there was seldom any case of ants tending Hemiptera for honeydew (sugary material excreted by the Hemiptera) on the plant. We analysed the sugar and amino acids compositions of EFN, honeydew and phloem sap, and found that EFN composition was much richer and more attractive (to ants) than honeydew, thereby suggesting that EFN could possibly function to distract ants from tending Hemiptera on the plant, thereby avoiding further damage to the plant. We also observed that EFN composition was much richer than phloem sap, and thereby confirmed that EFN is not mere phloem exudate; rather, our results suggests that EFN could possibly be synthesized actively in the secretory cells of the extrafloral nectary. Anatomical observations of the foliar nectaries further support the synthesis of EFN in the secretory cells of the nectary. Chapter 4: Nutritional benefits from domatia-inhabitants in an ant–plant interaction: interlopers do pay the rent (published in Functional Ecology) In this chapter, we explore how a myrmecophytic system could evolve in the absence of protection benefits from the partner ants. We investigate non-protective benefits, specifically trophic (nutrient) benefits, from the protective and non-protective ants and other invertebrates to the host plant, using stable isotope techniques. We selected three representative inhabitant species for our analysis, viz., the protective ant T. albipes, a non-protective ant Crematogaster dorhni, and the arboreal earthworm Perionyx pullus. We observed that earthworms contributed approximately 9% while protective or non-protective ants contributed approximately 17% of the nitrogen to the plant tissues nearest to the domatium. We also observed from 15N labelling experiments that that nutrients from the domatia are not restricted solely to the domatia-bearing branch but could travel to distant non-domatia bearing branches as well. This study demonstrated for the first time that non-protective ants and non-ant invertebrates that inhabit the domatia, and hitherto referred to as interlopers, could be in a trophic mutualism with the host plant, thereby proposing the possibility of trophic mutualism as a factor for the evolution and maintenance of the domatia trait in addition to or in the absence of protection mutualism. It is also possible that fitness benefits of bearing domatia, acquired via trophic mutualism, could later facilitate the establishment of a specialised ant–plant protection mutualism. Chapter 5: Structure and development of the caulinary domatia of Humboldtia brunonis In this chapter, we investigate the morphology of domatia at different ontogenetic stages in order to understand the mode of development of the domatia. Our observations show that the domatium of H. brunonis is formed spontaneously near the terminal end of a growing branch, next to the young apical shoot. It appears as a young swollen internode which is soft and fleshy with the pith tissue still present. As the domatia grows and expands, the collective effect of both schizogeny as well as lysogeny, act on on the pith region. We also observed acropetal lignification of the pith cells around the hollow chamber. We investigate micro-scale anatomy of the inner wall of the domatia using scanning electron microscopy, and observed that the inner lining of the domatia cavity have canaliculated, lignified sclerenchyma with numerous plasmodesmata (intercellular pits) that could facilitate the flow of occupant-derived nutrients supporting trophic interaction between the plant and its domatia inhabitants. We also observed fungal mycelia-like structures in ant-occupied domatia that suggests the possibility of a fungus as a third party in the ant–plant trophic mutualism, as is observed in some other myrmecophytic systems. This aspect however needs further investigation. Chapter 6: Conclusion In this chapter, the main findings of the preceding chapters are summarised. A general conclusion of the thesis is provided, and future directions leading from the present thesis are also listed. The present thesis has explored the dynamics of interactions between a unique semi-myrmecophyte and its domatia-inhabitants; while the unprotected host plant resorts to an escape strategy to evade foliar herbivory, the ants (and other invertebrates) seem to have bid “a farewell to arms” and yet maintain a mutualism with its host via nutrient exchange. The results of this thesis contribute to furthering our current understanding of the evolution and stability of inter-species mutualisms.

La symbiose légumineuse-rhizobium a une importance majeure pour les écosystèmes terrestres puisqu'elle permet à la plante hôte de fixer l'azote atmosphérique. L'interaction initiale entre le poil absorbant de la plante hôte et son partenaire bactérien repose sur un dialogue moléculaire complexe. L'évènement de signalisation le plus précoce, détecté immédiatement après la perception des facteurs Nod bactériens, est un influx de Ca2+, accompagné d'une inhibition de la pompe à proton et d'un efflux de Cl- conduisant à une dépolarisation de la membrane plasmique. Cette dépolarisation provoque un efflux de K+ permettant le repolarisation de la membrane. L'objectif de ce travail a été d'identifier des acteurs moléculaires de cette signalisation électrique en utilisant Medicago truncatula comme légumineuse modèle. Dans un premier temps, nous avons identifié un répertoire de gènes candidats à partir de l'analyse du transcriptome du poil absorbant obtenu par RNA-Seq. Nous avons alors exprimé différents candidats (2 canaux anioniques, 1 canal cationique potentiel de la famille CNGC et 1 canal potassique) dans des ovocytes de xénope pour tester leur fonctionnalité (dans ce système) et préciser leurs propriétés de transport. Nous nous sommes alors focalisés sur l'analyse de la fonction in planta du gène codant le canal potassique (démontré comme étant de type rectifiant sortant) en précisant son patron d'expression par transgenèse et sa fonction par génétique inverse. L'absence d'expression fonctionnelle de ce gène se traduit par la disparition complète du courant potassique voltage-dépendant sortant des cellules de M. truncatula. Les premières analyses indiquent que cette perte de fonction n'inhibe pas la capacité de nodulation de la plante mais l'affecte significativement. Elle impacte également la régulation de l'ouverture stomatique de la plante mais n'a pas d'effet sur la translocation de K+ dans la sève xylémienne racinaire vers les parties aériennes. / The legume-rhizobium symbiosis is of crucial importance in terrestrial ecosystems because it allows the plant to assimilate atmospheric nitrogen. The establishment of the interaction between plant root hairs and their symbiotic bacterial partners relies on complex signaling mechanisms. The earliest detected event, immediately triggered by root hair perception of Nod-factors, is a Ca2+ influx, proton pump inhibition and efflux of Cl- resulting in depolarization of the cell membrane. This depolarization is followed by K+ efflux, allowing repolarization of the cell membrane. The general objective of this work is to identify the molecular mechanisms underlying this electrical signaling by using the legume model Medicago truncatula. In a first step, we identified candidate ion channels and transporters by analyzing the root hair transcriptome obtained by RNA-Seq. Then, several candidate genes (1 member from the CNGC channel family, 1 from the Shaker K+ channel family and 2 from the SLAC anion channel family) were expressed in Xenopus oocytes to check their activity in this heterologous system and determine their functional properties. Then, we focused on the gene encoding the Shaker channel, shown to mediate outwardly-rectifying voltage-gated K+ selective currents. We analyzed its expression pattern using a GUS construct and its function in planta by phenotyping a loss-of-function mutant pant. A first set of experiments has shown that the loss-of-function mutation does not suppress the plant nodulation capacity but significantly depresses it. It also affects the control of stomatal aperture upon water stress but let unchanged K+ secretion into the xylem sap in roots and translocation towards the shoots.

La symbiose entre les légumineuses et les Rhizobiacées est la source d’azote fixé la plus importante pour le bon fonctionnement des écosystèmes naturels et agricoles. Très étudiée chez des légumineuses modèles, certains aspects de cette interaction restent peu connus ; c’est le cas des mécanismes génétiques et fonctionnels qui contrôlent la spécificité hôte-symbiote. Il n’y a que peu d’études globales consacrées à ce phénomène, et les gènes symbiotiques sont très peu connus chez les espèces non-modèles. Dans ce contexte, nous avons étudié un cas de changement de spécificité symbiotique remarquable chez des espèces phylogénétiquement proches du genre Lupinus (Fabacées). Tout d’abord, la reconstruction et l’analyse de génomes chloroplastiques complets a permis de camper le cadre évolutif de la symbiose en générant de nouveaux marqueurs d’intérêt pour clarifier la phylogénie et l’évolution des lupins. A partir d’une expérimentation d’inoculation croisée impliquant trois espèces de lupins méditerranéens et deux souches compatibles et incompatibles de Bradyrhizobium, une approche RNA-Seq a permis de produire les premiers nodulomes de lupin et d’identifier les gènes symbiotiques. L’analyse des gènes différentiellement exprimés a montré que la spécificité symbiotique affecte non seulement la voie de signalisation et de régulation de la symbiose, mais également une diversité de voies métaboliques associées. Enfin, l’étude de la dynamique évolutive et fonctionnelle de quelques gènes a mis en évidence l’impact et l’importance des phénomènes de duplication aux différents niveaux de la cascade génétique symbiotique. / Legumes-Rhizobia symbiosis is the most important fixing nitrogen source for the good functioning of both natural and agricultural ecosystems. Although, it is extensively studied in model legumes, some aspects of this interaction remain unclear, such as the genetic and functional mechanisms controlling the host-symbiont specificity. Large scale studies of this process are scarce and symbiotic genes are not well described in non-model species. In this context, the effect of symbiotic specificity was investigated in phylogenetically close relative species belonging to the Lupinus genus (Fabaceae). First, the reconstruction and analysis of complete chloroplast genomes allowed us to generate new and useful markers for clarifying the Lupinus phylogeny in order to lighten the evolutionary context of the symbiosis. Following a cross-inoculation experiment of three Mediterranean lupine species with two compatible or incompatible Bradyrhizobium strains, a RNA-Seq approach allowed the reconstruction of the first lupine nodulomes and the identification of lupine symbiotic genes. The analysis of differentially expressed genes revealed that the symbiotic specificity affects not only the signalling and regulatory symbiotic pathways, but also diverse associated metabolic pathways. Finally, evaluating the evolutionary and functional dynamics of genes highlighted the importance of gene and genome duplication events at different steps of the symbiotic genetic pathway.

La symbiose à Rhizobia ainsi que la symbiose endomycorhizienne à arbuscules, présentes dans la rhizosphère, possèdent un intérêt agrobiologique et écologique majeur ; elles permettent aux plantes de croître naturellement sur un sol aride et peu fertile. Il a été démontré récemment que les signaux (facteurs « Myc ») impliqués dans la mise en place de la symbiose endomycorhizienne à arbuscules appartiennent à la famille des lipo-chitooligosaccharides. Une nouvelle synthèse du facteur de mycorhization [Myc-IV (C16:0, S)], le plus abondant et bioactif, a été effectuée en utilisant une stratégie de synthèse par blocs utilisant des méthodes robustes de glycosylation, le diméthyldioxirane pour l’ouverture oxydante régiosélective des acétals de benzylidène et l’emploi d’un thiol peu toxique et peu odorant pour former les donneurs thioglycosides. Étant donné la purification laborieuse par chromatographie sur gel de silice des oligosaccharides après les étapes de glycosylation, une nouvelle méthode utilisant des liquides ioniques supportés a été appliquée permettant de modifier les propriétés physico-chimiques des saccharides. Les produits sont purifiés par de simples lavages grâce à ce motif ionique présent en position anomérique. Le chitooligosaccharide (CO-IV), intermédiaire clef pour la synthèse de lipo-chiooligosaccharides non sulfatés d’intérêts ou de la TMG-chitotriomycin, a ainsi été obtenu. / Rhizobia symbiosis and arbuscular mycorrhiza symbiosis have an agrobiological and ecological interest because they allow plants to grow on aride and infertile soil. Recently, the symbiotic signals (« Myc factors ») were identified as a mixture of lipo-chitooligosaccharides (LCOs). The preparation of Myc factor [Myc-IV (C16:0, S)], the most abundant and bioactive, was carried out using a blockwise synthesis. Dimethyldioxirane for a regioselective oxidative cleavage of benzylidene acetals and an odorless and few toxic thiol to form thioglycoside donors were employed. To eliminate the laborious purifications of oligosaccharides by chromatography on silica gel after each glycosylation step, we developped an ionic liquid supported strategy. The ionic liquid part changes the physico-chimical properties of the expected product and we isolated the glycostructures by simple phase-extractions. The chitooligosaccharide (CO-IV), key intermediate for the synthesis of non-sulfated lipo-chitooligosaccharides or TMG-chitotriomycin, was obtained by this strategy.

Jordens resurser används flitigt av människan och bidrar bland annat till samhällsutvecklingar. Men användandet bidrar också till utsläpp av växthusgaser, global uppvärmning och vattenanvändning. För att minska det ekologiska fotavtrycket och resursanvändningen har städer och aktörer börjat utveckla industriell symbios som är ett samarbete där en restprodukt från ett företag blir en resurs till ett annat företag. Den här samhällsutveckling påvisar en samhällsövergång för att utveckla och sammanföra ekonomin, miljön och samhället. Studien undersöker om transition management som styrningsstrategi kan appliceras i etableringen av industriell symbios i Malmö hamnområde. För att svara på frågan behövdes en delfrågeställning som löd: Hur har processen av projektet, delad energi är dubbel energi, gått till i Malmö stad hamnområde? Delad energi är dubbel energi är ett projekt som utvecklat industriell symbios i Malmö stad. Projektet påbörjades 2015 och avslutades under 2019 där 12 aktörer varit delaktiga. Fyra intervjuer genomfördes med personer delaktiga i projektet på ett eller annat sätt. I analysen sammanställdes information från informanterna och på delad energi är dubbel energis hemsida, utifrån transition management-modellen. Vi delade upp analysen i fyra komponenter från modellen som är ​transition-arena​, transition-agenda,​​transition-actiono​ch​transition-adaption​.Idethärarbetetbehandlarvi transition-​processensomövergångentillcirkulärekonomigenomindustriellsymbios. Transition management-modellens syfte är att genom en ​transition gå från ett jämviktsläge till ett annat. / The earth's resources contribute, among other things, to societal developments. But it also contributes to greenhouse gas emissions, global warming and water use. To reduce the ecological footprint and resource use, cities and actors have begun to develop industrial symbiosis, which is a collaboration where a residual product from one company becomes a resource for another company. This societal development demonstrates a societal transition to develop and bring together economy, the environment and society. The purpose of this study was to investigate whether transition management as a management strategy could have been applicable in the establishment process of industrial symbiosis in the Malmö port area. The main question was whether it would have been possible for the City of Malmö to use the transition management model during the establishment process of industrial symbiosis in the port area. To answer that question, a sub-question was needed: How did the process of the project, ​delad energi är dubbel energi, tok place in the port area of ​​Malmö? ​Delad energi är dubbel energi is the project that has developed industrial symbiosis in the city of Malmö, where we have, among other things, taken part in the project process. The project began in 2015 and ended in 2019 where 12 actors were involved at the beginning. To answer our questions, four interviews were conducted with people who have all been involved in the project in one way or another. The analysis compiled the information we received from the informants and what we found on shared energy is a dual energy website, based on the transition management model. We divided the analysis into four components from the model, which are transition arena, transition agenda, transition action and transition adaptation. In this work, we treat the transition process as the transition to a circular economy through industrial symbiosis. The purpose of the transition management model is to use the specified transition to go from one equilibrium position to another.

La compréhension et l'exploitation des processus biologiques, tels que la symbiose fixatrice d'azote (plante-bactéries) et la symbiose endomycorhizienne à arbuscules (plante-champignons), représentent un intérêt agronomique et écologique majeur. Les lipo-chitooligosaccharides (LCO) jouent un rôle essentiel dans la mise en place de ces deux symbioses. Il est donc important de mieux comprendre les mécanismes induits par ces molécules signal, et notamment l’interaction avec leur récepteur dans les plantes-hôtes.Les synthèses chimiques de ces molécules sont souvent longues, difficiles et les rendements finaux sont très faibles. Il est intéressant de s'intéresser à l'obtention d'analogues biologiquement actifs dont la synthèse serait plus efficace. Différents travaux ont montré qu'un cycle triazole pouvait être un bon mime d'une unité saccharidique. De plus, des travaux de modélisation des interactions protéine-ligand ont permis de supposer que l'unité II d'un LCO-IV pourrait avoir un rôle moins important dans la liaison avec le récepteur. Le but du projet a donc été de réaliser la synthèse de ces analogues de LCO-IV dont l'unité II est remplacée par un lien triazole.La stratégie développée a nécessité la synthèse de deux briques moléculaires, un monosaccharide propargylé en position 4 et un disaccharide comportant un azoture en position anomère. Grâce à la mise au point des différentes étapes de synthèse, ces deux briques ont pu être obtenues avec de bons rendements. La cycloaddition [3+2] catalysée au cuivre a permis d'obtenir le triazole souhaité et les premiers analogues de tétrasaccharides de manière efficace. L'utilisation préalable de protections adéquates a permis d'introduire la diversité moléculaire souhaitée, une fonction sulfate sur la position 6 de l'unité réductrice et différentes chaînes carbonées lipophiles sur l'amine de l'unité non-réductrice. Quatre analogues de LCO ont été obtenus avec de très bons rendements. Les tests de compétitions, effectués sur ces analogues, n'ont montré aucune affinité pour le récepteur. Une approche synthétique de nouveaux analogues par une C-glycosylation a alors été proposée. / Understanding and exploitation of biological processes, such as symbiotic nitrogen fixation (plant-bacteria) and arbuscular endomycorrhizal symbiosis (plant-fungi), represent important agricultural, ecological and societal interest. The lipo-chitooligosaccharides (LCO) play an essential role in the implementation of these symbioses, it is then important to better understand the mechanisms induced by these signaling molecules, and especially the interaction with host-plant receptors.The chemical syntheses of these molecules are often long, difficult and the final yields are very low, so it could be interesting to obtain biological active analogs more efficiently. Various studies have already shown that a triazole unit could be a saccharide mimic. Furthermore, modelling studies of protein-ligand interactions showed that the monosaccharidic unit II of a LCO-IV could have a less important role in the interaction with the receptor. The project aimed to synthesize these LCO-IV analogs in which unit II was replaced by a triazole link.The strategy was directed towards the synthesis of two glycostructures, a monosaccharide propargylated at C-4 position and a disaccharide with an azide at anomeric position. Various synthetic steps were performed to have access to these two intermediates in good yields. Copper-catalyzed [3+2] cycloaddition gave efficiently the desired triazole unit of tetrasaccharidic analogs. The prior use of adequate protections finally allowed to introduce the desired molecular diversity, a sulphate function at C-6 position of the reducing unit and different lipophilic carbon chains on the amine of the non-reducing unit, and thus to obtain four LCO analogs with very good yields. Competition tests performed on these analogs have shown no affinity for the receptor. A synthetic approach of novel analogs using a C-glycosylation step was then proposed.

La mise en place des interactions symbiotiques, existant entre les Légumineuses et des microorganismes, sont des processus finement régulés, tant sur le plan moléculaire que cellulaire. Dans le cas de la symbiose avec des bactéries fixatrices d'azote, ou rhizobia, ces modifications se déroulent dans les poils racinaires. Plusieurs arguments tendent à montrer que la perception de contraintes mécaniques pourrait avoir un rôle dans la régulation de ces étapes. Par conséquent, nous nous sommes intéressés à une famille de protéines impliquées dans la mécanotransduction: les MSL (MscS-Like). Il s'agit de canaux capables de s'ouvrir en réponse à une tension mécanique appliquée sur la membrane plasmique. Nous avons exploré leurs fonctions dans les poils racinaires, lors de la mise en place de la symbiose entre la légumineuse modèle Medicago truncatula et des rhizobia. Des études in silico du génome de M. truncatula nous ont permis de définir la famille des MtMSL. Les analyses de l'expression de ces candidats ont montré que seuls deux d'entre eux sont transcrits dans les poils racinaires: MtMSL2.1 et MtMSL2.4, ce dernier étant majoritaire. Néanmoins, leur expression ne semble pas modifiée par un traitement aux facteurs Nod, molécules bactérienne induisant les premières étapes de la signalisation symbiotique. Parallèlement, des analyses en microscopie confocale, indiquent la présence de MtMSL2.4 à la membrane plasmique et dans des endomembranes. De plus, des mesures électrophysiologiques ont confirmé leur nature de canal à forte conductance activé par la tension de membrane. Enfin, plusieurs analyses phénotypiques ont été menées sur des mutants Mtmsl2.4, tant sur différents aspects de l'interaction avec les rhizobia, que sur la croissance racinaire ou celle des poils racinaires, pour laquelle une méthode de mesure semi-automatique a été développée. Cependant aucune différence avec les contrôles n'a pu être observée. Ces résultats laissent penser que le canal mécanosensible MtMSL2.4 aurait un rôle lors d'autres phénomènes qu'il serait intéressant de découvrir. / The first steps of symbiosis occurring between Legumes and microorganisms are highly regulated processes, both at the molecular level and at the cellular level. During symbiosis with nitrogen fixing bacteria, called rhizobia, these modifications occur in root hairs. Several arguments have shown that mechanical constraints may regulate these steps. Hence, the involvement of physical sensors during these early events is worth considering. We focused here on one of these sensor families, the MSL (MscS-Like). These proteins are channels able to open upon mechanical stretching. We look for their role during first steps of symbiosis between the model Legumes Medicago truncatula and rhizobia. In silico studies of M. truncatula's genome allowed us to define a MtMSL family. Transcript analyses showed that only two of them were expressed in root hairs: MtMSL2.1 and MtMSL2.4, the latter being the most expressed. However, this expression is not modified by Nod factor treatments; molecules produced by rhizobia that induces the first symbiotic signalization steps. In parallel, confocal microscopy analyses show plasma membrane and endomembrane localization of MtMSL2.4. Moreover, electrophysiological measurements confirmed that this candidate is a high conductance channel mechanically activated. Finally, we performed several phenotypical studies with Mtmsl2.4 mutants in different conditions. No differences were observed between the mutants and WT during rhizobia symbiotic interaction and root growth. There were also no differences observed in root hair development, for which a partly automatic measurement system was set up. These results suggest MtMSL2.4 may have a role in other phenomena, which could be interesting to understand further.

L’architecture du système racinaire des légumineuses est déterminée par la croissance des racines et leur capacité à former des racines latérales et des nodosités symbiotiques fixatrices d’azote en fonction des conditions environnementales. Chez la légumineuse modèle Medicago truncatula, nous avons mis en évidence que les phytohormones gibbérellines (GAs) et leur voie de signalisation – médiée par trois protéines MtDELLAs présentant des profils d’expression redondants – jouent un rôle clé dans la régulation du développement du système racinaire. En conditions non-symbiotiques, les GAs régulent négativement la croissance racinaire en réprimant l’activité méristématique et l’élongation cellulaire, et inhibent la formation des racines latérales. En conditions symbiotiques, le rôle des GAs et de leur voie de signalisation est double : au niveau de l’épiderme, les protéines MtDELLAs régulent positivement l’infection par les bactéries symbiotiques Rhizobia en interagissant de façon directe avec la voie de signalisation des facteurs Nod bactériens. Au niveau du cortex, les GAs régulent négativement l’organogénèse des nodosités. Les phytohormones cytokinines (CKs) et leur récepteur MtCRE1 étant essentiels pour initier la nodulation, l’interaction entre les voies de signalisation GA et CK a été analysée en parallèle. Les CKs régulent le niveau de GAs bioactives en modulant l’expression des gènes de leur métabolisme de manière dépendante du récepteur aux CKs MtCRE1. Réciproquement, les GAs régulent les gènes du métabolisme CK et le niveau de CKs bioactives de manière dépendante des MtDELLAs. Par ailleurs, une forme activée de MtDELLA complémente partiellement le phénotype de nodulation du mutant cre1 et lie le promoteur de MtCRE1, indiquant que les voies de signalisation GA et CK régulent la nodulation en étroite association. / Legume root system architecture is determined by both root growth and their ability to form lateral roots and nitrogen-fixing symbiotic nodules, depending on environmental soil conditions. In the model legume Medicago truncatula, we have shown that the phytohormones gibberellins (GAs) and their signaling – involving three MtDELLA proteins with redundant expression patterns – play a crucial role in the regulation of the root system development. In non-symbiotic conditions, GAs negatively regulate root growth through the repression of meristematic activity and cell elongation, and inhibit lateral root formation. In symbiotic conditions, GA and their signaling pathway play a dual role: in the root epidermis, MtDELLA proteins positively regulate infection by symbiotic bacteria Rhizobia, by directly interacting with the bacterial Nod factor signaling pathway. In the root cortex, GAs negatively regulate nodule organogenesis. The phytohormones cytokinins (CKs) and their receptor MtCRE1 being essential for the initiation of nodulation, we additionally analyzed the crosstalk between GA and CK signaling. CKs regulate the bioactive GA pool, controlling the expression of GA-metabolic genes, depending on the MtCRE1 receptor. In turn, GAs regulate CK-metabolic genes and the bioactive CK pool, depending on MtDELLAs. In addition, a dominant version of a MtDELLA partially complements the nodulation phenotype of the cre1 mutant and binds to the MtCRE1 promoter. These results indicate that GA and CK signaling pathways closely interact to regulate nodulation.

Seagrasses are the only group of submerged plants that are permanently growing in marine environment. They play an important role in the sea bottom ecosystem. Seagrasses are primary producers capable of accumulation and deposition of carbon. They influence water flow at the sea bottom and form symbioses with variety of organisms. Our knowledge of symbiotic interactions of seagrasses is still limited even though several studies of the topic have been carried out in recent years. Unlike most of terrestrial plants, seagrasses are generally considered as plants that do not form any specific associations with mycorrhizal or endophytic fungi. Surprisingly, we have discovered a novel fungal endophytic association in roots of Mediterranean endemic seagrass species Posidonia oceanica (L.) Delile. Morphology of this symbiotic fungi strongly resembles common symbiotic fungi of terrestrial plants, dark septate endophytes (DSE). We sampled roots of P. oceanica in large area of the Mediterranean from southeastern Spain to Albania and described range and taxonomical classification of the endophyte using microscopy, in vitro cultivation and molecular determination. Roots of P. oceanica in whole area of study are colonized by mere two endophytic fungal species. Over 90 % of the fungal symbionts belong to a single...