Conselho Nacional de Desenvolvimento Científico e Tecnológico / The culture of pecan [Carya illinoinensis (Wangenh.) K. Koch] has presented greater economic importance in southern Brazil in recent decades, thus increasing the planted area, mainly in the states of Rio Grande do Sul (RS), Santa Catarina (SC) and Paraná (PR). However, despite the increasing growth of planted area, little research related to diseases in culture and breeding aimed at obtaining cultivars resistant to diseases, have been held in the country. The occurrence of leaf spot symptoms caused by Cladosporium spp. was observed in field in three southern states of Brazil. Given this observation, the general objective of this study was to evaluate the morphological and molecular variability of Cladosporium spp. isolates associated with leaf spot in pecan, checking its distribution in southern Brazil, as well as selecting resistant cultivars as a way to control the disease. The specific objectives were established as follows: a) To identify the species of Cladosporium spp. causing leaf spot in pecan orchards coming from producing areas of the three southern states of Brazil; b) To verify the diversity and morphological and genetic variability, by sequencing elongation factor (TEF - 1α) region, isolates of Cladosporium spp. from pecan plants with symptoms of leaf spot; c) To select efficient morphological characters for separation of isolated groups according to the species to which they belong; d) To confirm the pathogenicity of Cladosporium spp., as well as quantify the incidence and severity of leaf spot in Shawnee‟ and Barton‟ cultivars. For this, leaf samples were taken in 16 symptomatic pecan orchards to the isolation of the pathogen in the states of Paraná, Santa Catarina and Rio Grande do Sul. The isolates were characterized morphologically using mycelial growth, sporulation, colonies pigmentation, conidia and ramoconidia dimensions. These variables were used in the UPGMA analysis in which the isolates were grouped in a dendrogram according to genetic similarity and established characters that contributed most to the divergence. The analysis of 40 isolates by means of morphological and genetic analysis, sequencing of genes from the elongation factor TEF-1α confirmed that the species C. cladosporioides (21 isolates), C. pseudocladosporioides (18 isolates) and C. subuliforme (only one isolate) associated with leaf spot. The region of the elongation factor (TEF-1α) is efficient to identify and group the species associated with pecan included in the C. cladosporioides complex and sporulation is an important morphological characteristic to differentiate the species of Cladosporium spp. All 40 isolates were pathogenic to cultivars Barton‟ and Shawnee‟. The two cultivars were considered susceptible to leaf spot for the three species of Cladosporium spp. tested and there is susceptibility difference for C. pseudocladosporioides, where 'Shawnee' showed greater severity of disease in relation to 'Barton'. / A cultura da nogueira-pecã [Carya illinoinensis (Wangenh.) K. Koch] tem apresentado maior importância econômica no sul do Brasil nas últimas décadas, aumentando assim a área plantada, principalmente nos estados do Rio Grande do Sul (RS), Santa Catarina (SC) e Paraná (PR). No entanto, apesar do aumento crescente das áreas plantadas, poucas pesquisas relacionadas a doenças na cultura e ao melhoramento genético visando a obtenção de cultivares resistentes a doenças, têm sido realizadas no país. A ocorrência de sintomas de mancha foliar causada por Cladosporium spp. foi observada a campo nos três estados do sul do Brasil. Diante dessa observação, o objetivo geral do presente trabalho foi verificar a variabilidade morfológica e molecular de isolados de Cladosporium spp. associados à mancha foliar em nogueira-pecã, verificando sua distribuição na região sul do Brasil, bem como selecionar cultivares resistentes como forma de controle para a doença. Como objetivos específicos foram estabelecidos os seguintes: a) identificar as espécies de Cladosporium causadoras de mancha foliar em pomares de nogueira-pecã procedentes de regiões produtoras dos três estados do sul do Brasil; b) verificar a diversidade e a variabilidade morfológica e genética, através do sequenciamento da região do fator de elongação (TEF 1α), de isolados de Cladosporium spp. provenientes de plantas de nogueira-pecã com sintomas de mancha foliar; c) selecionar caracteres morfológicos eficientes para a separação dos isolados em grupos, de acordo com a espécie a que pertencem; d) confirmar a patogenicidade de isolados de Cladosporium spp., bem como quantificar a incidência e severidade da mancha foliar nas cultivares Barton‟ e Shawnee‟. Para isso, foram realizadas coletas de folhas sintomáticas em 16 pomares de nogueira-pecã para o isolamento do patógeno, nos estados do PR, SC e RS. Os isolados foram caracterizados morfologicamente através do crescimento micelial, esporulação, pigmentação das colônias, dimensões de conídios e ramoconídios. Essas variáveis foram utilizadas na análise UPGMA em que os isolados foram agrupados em um dendrograma de acordo com a similaridade genética e, estabelecidos os caracteres que mais contribuíram para a divergência. A análise dos 40 isolados através das características morfológicas e da análise genética, a partir do sequenciamento dos genes do fator de elongação TEF-1α, confirmaram as espécies C. cladosporioides (21 isolados), C. pseudocladosporioides (18 isolados) e C. subuliforme (apenas um isolado) associadas à mancha foliar. A região do fator de elongação (TEF-1α) é eficiente para identificar e agrupar as espécies associadas à nogueira-pecã incluídas no complexo C. cladosporioides e a esporulação é uma importante característica morfológica para diferenciar as espécies de Cladosporium spp. Todos os 40 isolados foram patogênicos às cultivares Barton‟ e Shawnee‟. As duas cultivares foram consideradas suscetíveis à mancha foliar para as três espécies de Cladosporium spp. testadas e existe diferença de suscetibilidade para C. pseudocladosporioides, onde a Shawnee‟ apresentou maior severidade da doença em relação a Barton‟.

This thesis aims to address a vital gap that has emerged in the digital identity regulatory discourse: how can the legal regulation of digital identity mirror the global nature of digital identity and be compatible with national local difference? Digital identity, or the digital representation of an individual, is a complex concept, which manifests in myriad forms (e.g. authenticators, claims, data or information, identifiers, presence, relationship representations and reputation) and natures. As such, it engages a gamut of legal domains ranging from criminal law, constitutional law, human rights law, law of identity schemes, contract law, intellectual property law, tort law and data protection law. Digital identity is global and local in its nature, influence and effects. Yet, the digital identity regulatory discourse has primarily developed in and focussed on the digitally advanced West, leaving out countries like India which are developing strong digital presences, with their own digital identity perceptions and needs. This situation is adverse to the sustained future of digital identity. Thus, the contribution of this thesis lies in filling this gap and preparing the ground for a dialogue between different countries with different national agendas through building international and local awareness of how similarities and differences operate in respect of digital identity, its regulation and providing a modest solution to help preserve the global and local dimensions of digital identity and its regulation. To this end, the thesis carried out comparative legal research on the legal regulation of digital identity using the UK and India as base jurisdictions. The original hypothesis was that that immense differences in the legal regulation of digital identity between the comparator countries would emerge. Yet, though differences were evident, considerable degrees of similarity also emerged, not just on the superficial level of mere identity of rules, but also in legal practice, in large part attributable to India’s penchant for legal transplants. While the transplantation of Western law did not result in a full-scale rejection of the transplanted laws in relation to digital identity in India, there are indications of anomalies caused by the imposition of Western cultural norms through law on an Indian society ill prepared for it. Thus there has resulted a tension between the local and the global, the indigenous and the externally imposed. The challenge is thus to resolve this, taking into account, on the one hand the need to maintain the global nature and relevance of digital identity and the other, the need to accommodate and be responsive to local differences. The thesis proposes a tentative solution called the tri-elemental framework (TeF) which draws from the Indian philosophical and legal concept of dharma (and its elements of Sad Achara, Vyavahara and Prayaschitta) and learns from the most universally relevant digital identity proposal, De Hert’s right to identity. The solution provides one way in which the law regulating digital identity, whatever its nature, can be made sense of and acquire cultural meaning appropriate to local contexts.

Thesis (doctoral)--Humboldt-Universität, Berlin, 2001. / Includes bibliographical references (p. 152-189).

Made available in DSpace on 2014-06-12T15:52:35Z (GMT). No. of bitstreams: 1 license.txt: 1748 bytes, checksum: 8a4605be74aa9ea9d79846c1fba20a33 (MD5) Previous issue date: 2009 / Ao longo dos últimos anos, a confiabilidade e a disponibilidade tornaram-se fatores cru- ciais para projetar sistemas computacionais, especialmente aqueles tolerantes a falhas. Em tais sistemas, componentes redundantes s~ao adicionados para que um sistema con- tinue a funcionar ininterruptamente, apesar da ocorrência de falhas. Algumas técnicas conhecidas operam com módulos reservas, são eles: hot standby, cold standby e TMR (Triple Modular Redundancy). A tolerância a falhas é alcançada a partir da junção des- sas técnicas por meio de um mecanismo de detecção de falha. Geralmente, falhas podem reduzir o desempenho dos sistemas, prolongar o tempo de parada ou levar o sistema a executar uma medida defensiva. Um importante exemplo de sistemas que necessitam de alta con¯abilidade, e que ainda n~ao t^em atra¶³do muita atenção na literatura, são os sistemas de transcorrência eletrônica de fundos (TEF). Os sistemas TEF, permitem aos clientes efetuar transações eletrônicas através de cartões de crédito, de débito ou ordem de pagamento. Organizações que provém TEF são pressionadas pelos clientes a oferecer serviços confiáveis, com alta disponibilidade e segurança a pre»cos acessíveis, isso porque, a indisponibilidade de um serviço contratado pode levar a sérios prejuízos econômicos. O crescimento dos pagamentos eletrônicos aumentou a importância para alcan»car bons níveis de desempenho nos servidores TEF. Com o aumento dos servi»cos de pagamento, cresce também o mercado TEF, exigindo cada vez mais que empresas, por exemplo, lojas, bancos ou restaurantes, ofere»cam serviços confiáveis, de altas disponibilidade e segurança a custos acessíveis. Dessa forma, este trabalho prop~oe um modelo em redes de Petri estocástica para avaliar o impacto da disponibilidade e da con¯abilidade dos recursos computacionais. Além disso, uma metodologia de avalia»c~ao de desempenho é proposta, com o intuito de auxiliar os processos de modelagem e de avaliação. Por fim, estudos de caso serão apresentados mostrando a aplicabilidade do trabalho em comento

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Cultivation of Walnut-pecan (Carya illinoinensis [Wangenh.] K. Koch) has intensified in recent years in the state of Rio Grande do Sul. However, the research related to plant pathology has not developed to the same degree, so producing pecan nuts have faced many unknown diseases in the state. The main objective of this study was: a) identify and characterize causal agents of new diseases on Walnut-pecan in Rio Grande do Sul, and as specific objectives: b) to collect and to identify pathogens in different locations in Rio Grande do Sul, c) evaluate the pathogenicity of isolates collected in plantations of Walnut-pecan from different locations in Rio Grande do Sul, d) perform the isolates morphological characterization collected from diseased plants of Walnut-pecan, and e) to identify the isolates species. For this purpose, samples were taken in seven cities in the state for isolating potentially pathogenic fungi which were also collected and analyzed soil samples to characterize the area and georeferencing. Pathogens, Fusarium spp. and Pestalotiopsis spp. which were not yet reported were tested for their pathogenicity. The first genus was tested by inoculation on substrate, and the second by leaf inoculation with spore suspension. The pathogenic isolates were characterized by mycelial growth, sporulation, conidial dimensions, colony pigmentation and formation of specific structures to each genus. The same isolates were also identified by molecular sequencing of the ITS and TEF-1α genes for Fusarium spp. and ITS and β-tubulin genes for Pestalotiopsis spp. Twelve pathogenic isolates of Fusarium spp. and eleven of Pestalotiopsis spp. were identified. The variables used on morphological characterization were able to differentiate the isolates, especially the width of conidia for Fusarium spp. and diameter of the colonies for Pestalotiopsis spp. The sequencing of the ITS regions and TEF-1α to Fusarium spp. confirmed the separation of isolates through morphological characteristics and identified five species: F. chlamydosporum, F. oxysporum, F. equiseti, Giberella fujikuroi species complex and F. graminearum species complex and for Pestalotiopsis spp. sequencing of the ITS regions and β-tubulin could identify some species, such as P. clavisora and P. cocculi, and other isolates remained without precise identification of the species, since the phylogeny of the genus is still poorly known. / O cultivo da nogueira-pecan (Carya illinoinensis [Wangenh.] K. Koch) tem se intensificado nos últimos anos no estado do Rio Grande do Sul. Entretanto, as pesquisas relacionadas aos problemas fitossanitários da espécie não se desenvolveram na mesma intensidade, de modo que muitos produtores do estado têm enfrentado enfermidades desconhecidas. Diante disto, o objetivo geral do presente trabalho foi identificar e caracterizar os agentes causais de novas doenças que atacam a nogueira-pecan no Rio Grande do Sul. Como objetivos específicos estabeleceram-se: a) coletar e identificar agentes patogênicos em diferentes localidades no Rio Grande do Sul; b) avaliar a patogenicidade de isolados coletados em plantios de nogueira-pecan de diferentes localidades no Rio Grande do Sul; c) caracterizar morfofisiologicamente os isolados coletados de plantas doentes de nogueira-pecan; e d) identificar, em nível de espécie, os isolados provenientes de plantas doentes de nogueira-pecan. Para tanto, foram realizadas coletas em sete municípios do estado, para isolamento de fungos potencialmente patogênicos. Também foram coletadas e analisadas amostras de solo para caracterização da área e georreferenciamento dos pontos. Os patógenos, ainda não relatados, Fusarium spp. e Pestalotiopsis spp., foram testados quanto a sua patogenicidade. O primeiro foi testado com inoculação em substrato, e o segundo com inoculação foliar por suspensão de esporos. Os isolados patogênicos foram caracterizados morfofisiologicamente através das variáveis crescimento micelial, esporulação, dimensões de conídios, pigmentação das colônias e formação de estruturas específicas de cada gênero. Os mesmos isolados também foram identificados molecularmente através de sequenciamento dos genes ITS e TEF-1α, para Fusarium spp., e ITS e β-tubulina, para Pestalotiopsis spp. Foram identificados doze isolados patogênicos de Fusarium spp. e onze de Pestalotiopsis spp. As variáveis utilizadas na caracterização morfofisiológica foram suficientes na diferenciação dos isolados, especialmente a largura dos conídios, para Fusarium spp. e o diâmetro das colônias, para Pestalotiopsis spp. O sequenciamento das regiões ITS e TEF-1α, para Fusarium spp., confirmou a separação dos isolados por meio das características morfofisiológicas e identificou cinco espécies, sendo elas F. chlamydosporum, F. oxysporum, F. equiseti, Giberella fujikuroi species complex e F. graminearum species complex. Para Pestalotiopsis spp., o sequenciamento das regiões ITS e β-tubulina permitiu que se identificassem algumas espécies, como é o caso de P. clavisora e P. cocculi. Outros isolados permaneceram sem identificação precisa da espécie, já que a filogenia do gênero ainda é pouco conhecida.

Polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) are common contaminants of sediment, soils and biological tissues. These compounds pose a significant risk to biological and ecosystem health and functioning due to these compounds being mutagenic, carcinogenic and are known to disrupt the endocrine system. The bioaccumulation and biomagnification potential that these compounds possess mean that they are capable of affecting the entire food chain and are not limited to the organisms that are directly in contact with the compounds Even though there has been an increase in the attention on identifying the presence and impacts that these compounds may have in South Africa, the level of attention is lower than what it is in other countries around the world. Although South Africa has guidelines in place for other pollutants, such as metals, there are no such guidelines in place to monitor PAHs and PCBs.. Industries are known to release both PAHs and PCBs, mainly from incomplete burning processes and the release of oils and fuels in the case of PAHs, and from heat transfer fluids in the case of PCBs. Durban Bay and surrounding areas of eThekwini, KwaZulu-Natal are highly industrialised with many aquatic systems, in which these contaminants are likely to deposit. The aim of this research was to determine the concentrations of these compounds by means of chemical analysis and additionally biological analysis, using the H4IIE-luc bioassay and compare these levels to international guideline levels. It was found that the concentrations of the 23 analysed PAHs were 6.5–3 235.6 ng.g-1 and the concentration of the PCBs analysed were 0–113.83 ng.g-1. Many sites were found to be in exceedance of the guideline limits, particularly in the harbour. Toxic equivalency factors (TEF) were used to gauge the toxic equivalency (TEQ) of the PAHs and PCBs that were found. The TEQs were generally low, and were below any guideline levels. The assay revealed the extract containing the PCBs had a bioassay equivalence (BEQ) of 0–93.54 pgTCDDeq. g-1 and the extract containing the PAHs of 0–776.08 pgTCDD-eq.g-1. With a proportion of the sites exceeding guideline limits. The BEQ results were two to three orders of magnitude greater than the TEQs calculated from the concentrations determined by the instrumental analysis, however, followed a similar trend. Additionally chemical analysis was not performed on a full suite of compounds that are able to elicit a response from the cells, which could be a reason why the BEQ and TEQ did not follow a similar trend among some of the samples. It would have been more beneficial to have performed chemical analysis on the 16 priority PAHs (as determined by the United States Environmental Protection Agency), the dioxin-like PCBs and polychlorinated dibenzo-p-dioxins (PCDD) and polychlorinated dibenzofurans (PCDFs) which are all capable of eliciting a response from the cells and have TEF values. The areas that were most affected by contamination of these compounds was the harbour and surrounding canals, and there was point source contamination along the Umhlatuzana, Umbilo, and Amanzimnyana Rivers. All dl-PCBs should be chemically analysed at all the sample areas, as these cause adverse effects to biota. In addition to this, biota should be sampled to determine concentrations of the compounds to determine bioavailability and the degree of bioaccumulation in the food chain. Utilising biomarkers it would be possible to determine stresses of fish. / MSc (Environmental Sciences), North-West University, Potchefstroom Campus, 2014

Polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) are common contaminants of sediment, soils and biological tissues. These compounds pose a significant risk to biological and ecosystem health and functioning due to these compounds being mutagenic, carcinogenic and are known to disrupt the endocrine system. The bioaccumulation and biomagnification potential that these compounds possess mean that they are capable of affecting the entire food chain and are not limited to the organisms that are directly in contact with the compounds Even though there has been an increase in the attention on identifying the presence and impacts that these compounds may have in South Africa, the level of attention is lower than what it is in other countries around the world. Although South Africa has guidelines in place for other pollutants, such as metals, there are no such guidelines in place to monitor PAHs and PCBs.. Industries are known to release both PAHs and PCBs, mainly from incomplete burning processes and the release of oils and fuels in the case of PAHs, and from heat transfer fluids in the case of PCBs. Durban Bay and surrounding areas of eThekwini, KwaZulu-Natal are highly industrialised with many aquatic systems, in which these contaminants are likely to deposit. The aim of this research was to determine the concentrations of these compounds by means of chemical analysis and additionally biological analysis, using the H4IIE-luc bioassay and compare these levels to international guideline levels. It was found that the concentrations of the 23 analysed PAHs were 6.5–3 235.6 ng.g-1 and the concentration of the PCBs analysed were 0–113.83 ng.g-1. Many sites were found to be in exceedance of the guideline limits, particularly in the harbour. Toxic equivalency factors (TEF) were used to gauge the toxic equivalency (TEQ) of the PAHs and PCBs that were found. The TEQs were generally low, and were below any guideline levels. The assay revealed the extract containing the PCBs had a bioassay equivalence (BEQ) of 0–93.54 pgTCDDeq. g-1 and the extract containing the PAHs of 0–776.08 pgTCDD-eq.g-1. With a proportion of the sites exceeding guideline limits. The BEQ results were two to three orders of magnitude greater than the TEQs calculated from the concentrations determined by the instrumental analysis, however, followed a similar trend. Additionally chemical analysis was not performed on a full suite of compounds that are able to elicit a response from the cells, which could be a reason why the BEQ and TEQ did not follow a similar trend among some of the samples. It would have been more beneficial to have performed chemical analysis on the 16 priority PAHs (as determined by the United States Environmental Protection Agency), the dioxin-like PCBs and polychlorinated dibenzo-p-dioxins (PCDD) and polychlorinated dibenzofurans (PCDFs) which are all capable of eliciting a response from the cells and have TEF values. The areas that were most affected by contamination of these compounds was the harbour and surrounding canals, and there was point source contamination along the Umhlatuzana, Umbilo, and Amanzimnyana Rivers. All dl-PCBs should be chemically analysed at all the sample areas, as these cause adverse effects to biota. In addition to this, biota should be sampled to determine concentrations of the compounds to determine bioavailability and the degree of bioaccumulation in the food chain. Utilising biomarkers it would be possible to determine stresses of fish. / MSc (Environmental Sciences), North-West University, Potchefstroom Campus, 2014

Orientador: Sandra de Moraes Gimenes Bosco / Resumo: Pythium insidiosum é o agente etiológico da pitiose, uma infecção granulomatosa crônica, com prevalência em regiões de clima tropical e subtropical que acomete mamíferos, principalmente equinos, cães e humanos. Este micro-organismo é um falso fungo que apresenta uma ampla distribuição geográfica, sendo muito prevalente na América do Sul (pitiose equina e canina) e na Tailândia (pitiose humana). Estudos moleculares têm permitido diagnóstico precoce e melhor compreensão das relações filogenéticas, dividindo o patógeno em três clados (I, II e III ou A, B e C). Entretanto essas informações são ainda bastante limitadas e novas regiões gênicas poderiam ajudar a esclarecer a história evolutiva dessa espécie. Assim sendo, este trabalho visou estabelecer as relações filogenéticas entre 52 isolados de P. insidiosum, americanos e asiáticos, por meio do sequenciamento de três novas regiões gênicas: a região do fator de alongamento da tradução (Tef-1α), α e β tubulina, além da padronização da técnica de Pulse Filed Gel Electrophoresis (PFGE) para esta espécie. A região do Tef-1α mostrou-se menos polimórfica em relação a α e β tubulina, entretanto separou as cepas aqui trabalhadas em dois clados distintos, sendo um composto apenas de cepas classificadas previamente como sendo do clado III (asiáticas), e agrupou todas as cepas americanas junto às cepas do clado II. A filogenia baseada no gene da β tubulina separou os isolados nos três clados esperados. Em relação à α tubulina houve diferenc... (Resumo completo, clicar acesso eletrônico abaixo) / Abstract: Pythium insidiosum is the etiological agent of pythiosis, a chronic granulomatous infection, prevalent in tropical and subtropical regions that affects mammals, especially horses, dogs and humans. This is a fungus-like microorganism that has a wide geographical distribution and is very prevalent in South America (equine and canine pythiosis) and Thailand (human pythiosis). Molecular studies have allowed early diagnosis and better understand of phylogenetic relationships, and the pathogen is currently divided into three clades (I, II and III or A, B and C). However, this information is still quite limited for this pathogen and new gene regions could help understanding the evolutionary history of this species. Therefore, this study aimed to establish the phylogenetic relationships among 52 american and asian P. insidiosum isolates by sequencing three new gene regions: the translation elongation factor (Tef-1α), α and β tubulin, in addition to the standardization of the Pulse Filed Gel Electrophoresis (PFGE) technique for this species. The Tef-1α region showed little polymorphic in relation to α and β tubulin, however it separated the strains here studied into two distinct clades, being composed only of strains previously classified as clade III (Asian), and grouped all the American strains next to the clade II strains. The β tubulin gene-based phylogeny separated the isolates into the three expected clades. Regarding α tubulin there was differentiation of isolates in clades I a... (Complete abstract click electronic access below) / Mestre

The objective of this research was to investigate the occurrence of mycoflora in rice plants and rice seeds in South Africa and their negative impact. A total of six species of Fusarium were isolated from diseased rice plants and rice seeds and identified as F. anthophilum, F. chlamydosporum, F. compactum, F. equiseti, F. fujikuroi and F. semitectum. In the translation elongation factor data set, Fusarium equiseti isolates grouped together within the F. incarnatum - equiseti Species Complex (FIESC). The isolates from rice clustered together in a single clade with the F. equiseti and F. incarnatum isolates forming two separate sub-clades.The isolates of F. equiseti present a new phylogenetically distinct species in FIESC. In the pathogenicity tests, isolates of both F. anthophilum and F. fujikuroi caused bakanae disease to rice plants. Fifty four rice cultivars and lines were tested by the standardized test tube inoculation method for resistance and susceptibility against bakanae isolate of F. anthophilum and the bakanae isolate of F. fujikuroi. None of the rice cultivars and lines was found to be resistant to bakanae isolates of Fusarium spp. The fungicide, benomyl was found to be most effective as a seed treatment for controlling bakanae disease of rice due to isolates of both F. anthophilum and F. fujikuroi. Thiram was found to be the least effective fungicide for controlling bakanae disease of rice caused by isolates of both the Fusarium spp. Apart from Fusarium species, other fungi that were also isolated from diseased rice plants and rice seeds were identified as Alternaria alternata, Alternaria longipes, Cochliobolus miyabeanus, Nigrospora sphaerica, Phoma eupyrena, Phoma jolyana, Phoma sorghina and Pithomyces sp. In mycotoxin tests, the isolates of both F. anthophilum and F. fujikuroi produced moniliformin. None of the isolates of F. anthophilum and F. fujikuroi produced fumonisins. This research is important as it identifies many fungal species in rice plants and seeds in South Africa for the first time. Currently, there is very little literature that makes reference to such findings under South African conditions. In addition, this investigation unravels previously unknown information on the resistance of rice to bakanese disease. Finally, information is provided on the effectiveness of commonly used fungicides (benomyl and thiram) to control rice diseases. This knowledge is crucial information that is useful to plant pathologists, the farming community and the scientists that are involved in strategies of fighting or reducing rice diseases so as to help contribute to food security. / Environmental Sciences / D. Phil. (Environmental Science)

The objective of this research was to investigate the occurrence of mycoflora in rice plants and rice seeds in South Africa and their negative impact. A total of six species of Fusarium were isolated from diseased rice plants and rice seeds and identified as F. anthophilum, F. chlamydosporum, F. compactum, F. equiseti, F. fujikuroi and F. semitectum. In the translation elongation factor data set, Fusarium equiseti isolates grouped together within the F. incarnatum - equiseti Species Complex (FIESC). The isolates from rice clustered together in a single clade with the F. equiseti and F. incarnatum isolates forming two separate sub-clades.The isolates of F. equiseti present a new phylogenetically distinct species in FIESC. In the pathogenicity tests, isolates of both F. anthophilum and F. fujikuroi caused bakanae disease to rice plants. Fifty four rice cultivars and lines were tested by the standardized test tube inoculation method for resistance and susceptibility against bakanae isolate of F. anthophilum and the bakanae isolate of F. fujikuroi. None of the rice cultivars and lines was found to be resistant to bakanae isolates of Fusarium spp. The fungicide, benomyl was found to be most effective as a seed treatment for controlling bakanae disease of rice due to isolates of both F. anthophilum and F. fujikuroi. Thiram was found to be the least effective fungicide for controlling bakanae disease of rice caused by isolates of both the Fusarium spp. Apart from Fusarium species, other fungi that were also isolated from diseased rice plants and rice seeds were identified as Alternaria alternata, Alternaria longipes, Cochliobolus miyabeanus, Nigrospora sphaerica, Phoma eupyrena, Phoma jolyana, Phoma sorghina and Pithomyces sp. In mycotoxin tests, the isolates of both F. anthophilum and F. fujikuroi produced moniliformin. None of the isolates of F. anthophilum and F. fujikuroi produced fumonisins. This research is important as it identifies many fungal species in rice plants and seeds in South Africa for the first time. Currently, there is very little literature that makes reference to such findings under South African conditions. In addition, this investigation unravels previously unknown information on the resistance of rice to bakanese disease. Finally, information is provided on the effectiveness of commonly used fungicides (benomyl and thiram) to control rice diseases. This knowledge is crucial information that is useful to plant pathologists, the farming community and the scientists that are involved in strategies of fighting or reducing rice diseases so as to help contribute to food security. / Environmental Sciences / D. Phil. (Environmental Science)