Coastal wetlands protect coastlines through efficient storage of organic carbon (OC) that decreases wetland vulnerability to sea level rise (SLR). Accelerated SLR is driving saltwater intrusion and altering vegetation communities and biogeochemical conditions in coastal wetlands with uncertain implications. We quantified changes in OC stocks and fluxes driven by 1) saltwater and phosphorous intrusion on freshwater and brackish marshes, 2) vegetation along an experimental saltmarsh to mangrove gradient, 3) saltwater intrusion and vegetation change across a marsh to mangrove ecotone, and 4) vegetation change and mangrove forest development along a marsh to mangrove ecotone. Increasing salinity in freshwater marshes decreased root biomass and soil elevation within one year. In brackish marshes, increased salinity decreased root productivity and biomass and increased root breakdown rate (k), while added salinity did not increase elevation loss. In our experimental marsh-mangrove ecotone, mangrove vegetation promoted higher organic carbon (OC) storage by increasing above and belowground biomass and reducing organic matter k. However, mangroves also increased belowground k, and decreased allochthonous marine subsidies, indicating the potential for OC storage trade-offs. In the Southeast Everglades, we identified strong interior-coastal gradients in soil stoichiometry and mangrove cover. Interior freshwater soil conditions increased k, while total soil OC stocks decreased toward the coast indicating that saltwater intrusion is driving large scale soil OC loss. In the southeast Everglades, mangrove expansion increased root biomass and root productivity, but did not mitigate the overall loss of OC stocks toward the coast. Similarly, in the southwest Everglades, saltwater intrusion drove a decrease in soil OC. However, mangrove encroachment drove a rapid recovery and increased OC stocks. Mangrove encroachment doubled aboveground biomass within the last ten years, increased it 30 times in the last 30 years, and doubled belowground biomass after 20 years. Our research shows that 1) moderate saltwater intrusion without mangrove encroachment will lead to a loss in OC stocks and potentially lead to wetland elevation loss and submergence, 2) in the absence of a change in saltwater intrusion, mangrove expansion can enhance OC storage 3) mangrove expansion can mitigate OC loss during saltwater intrusion, but this pattern depends on mangrove recruitment and ecosystem productivity.

The Florida Everglades is a massive and highly managed subtropical wetland ecosystem, strongly influenced by anthropogenic control of freshwater distribution and highly susceptible to a changing climate, including rising sea-level and changes in temperature and rainfall. Shifting hydrologic regimes impact ecosystem function and biogeochemistry, which in turn control the sources, fate, and transport of organic matter. As a master environmental variable, it is essential to understand how organic matter dynamics will respond to changes in the balance between freshwater and saltwater associated with landscape-scale Everglades restoration efforts and climate change. The research comprising this dissertation improves current understanding of the linkages between organic matter and hydrology in the Everglades across a broad range of temporal and spatial scales. A range of research tools, including stable molecular biomarkers, water quality sensors, data synthesis and multivariate statistics were utilized. Biomarkers were used to track particulate organic matter mobilization in response to experimentally manipulated flows and provided initial evidence that sheet flow restoration can re-engineer landscape microtopography, influencing both ecosystem structure and organic matter inputs to Everglades National Park (ENP). Short-term and long-term temporal studies indicated the quantity and quality of dissolved organic carbon responds to changes in freshwater flow to marshes and mangrove forests in ENP, and that spatial patterns and trends are driven by a complex mixture of managed and natural surface water inputs (i.e., rainfall and water management inflows) as well as groundwater discharge. Application of climate scenario forecasting to relationships established between organic matter and hydrologic drivers predicted reductions in dissolved organic carbon export from ENP and changes in organic matter molecular composition. Furthermore, high-frequency measurements showed hydrologic connectivity of freshwater and estuarine organic matter pools at sub-monthly time-scales. In summary, the work presented here clearly indicates strong yet spatiotemporally complex relationships between changes in water and the sources and transport of organic carbon through the Everglades.

The Florida manatee (Trichechus manatus latirostris) is an endangered species that migrates to warm water refuges such as natural springs or power plant effluents during the winter months to escape cold water. The Florida Power and Light (FPL) discharge canal in Port Everglades, Ft. Lauderdale, FL., is utilized as a refuge by overwintering manatees. Construction of a new bridge over the FPL effluent canal had a potential effect on manatee usage of the canal. Discharge is often 10-15° C warmer in the winter season than the surrounding waters of the Intracoastal Waterway. Previous data, including age class and cow/calf abundance from pre-bridge winters (2004-2009), were compared with data from winter 2010, during bridge construction and winter 2011, postbridge construction. No manatees were present at the survey sites during winter until surface water temperatures fell below 22° C. Although monthly mean surface water temperatures were not statistically different between 2008-2009, 2009-2010, and 2010-2011 (21.9±0.4° C, 21.8±1.8° C and 21.4±0.6° C respectively), manatee abundance did vary. 2008-2009 had higher monthly mean numbers of manatees per survey from December through March (29.7, 27.3, 48.1, 2 respectively) than 2009-2010 (0, 30, 10.7, 5 respectively) and 2010-2011 (18.7, 6.7, 0.1, 0 respectively). A Poisson distribution analysis showed a significant difference in adult manatee counts among the study years (α < 0.05). No significant differences were found for juveniles and calves. While I cannot decisively state that bridge construction reduced the number of overwintering adult manatees during 2010, there appears to be the potential for an effect.

The historic Everglades Ridge and Slough landscape maintained regularly spaced and elevated sawgrass ridges interspersed among exposed deeper-water sloughs; however, widespread but irregular hydrologic modification has degraded much of this landscape patterning. My study assessed the effects of hydrologic modification on vegetation community distinctness within the Ridge and Slough landscape through sampling species composition at fine-scales along a hydrologic gradient to measure the magnitude of segregation of species among patch types. The results show that vegetation community and topographic variation degradation is widespread, with distinctness differences proceeding and possibly being driven by topographic variation loss. Vegetation responses to past hydrologic regime modifications are likely affected by temporal lags; however, vegetation distinctness regeneration may also be hindered by a vegetatively homogeneous alternative stable state. Hydrologic regime restoration is critical for Ridge and Slough patterned landscape reestablishment, but management targets are complicated by vegetation response lags and possibly alternative stable states.

Reducing the rates of greenhouse gas (GHG) emissions is critical in combatting global climate change. Carbon dioxide (CO2) and methane (CH4) are the two most important carbon-based GHGs, for their atmospheric warming potential. Wetlands such as the Florida Everglades play major roles in the global carbon cycle, as varying hydrologic conditions lead to differential production rates of these two GHGs. This study measured CO2 and CH4 emissions in a re-created Everglades ridge-and-slough wetland, where water levels were controlled to reflect natural flood patterns. As expected, lower elevations were flooded longer and produced more CH4, while higher elevations produced more CO2. Since CH4 has a relatively high global warming potential, CO2 production would need to be 70 times that of CH4, to balance their GHG output. The average ratio of CO2 to CH4 across elevations was 22.0 (mol:mol), indicating that future water management within wetlands should consider GHG production potential.

In aquatic systems refuge habitats increase resistance to drying events and are necessary for maintaining populations in disturbed environments. However, reduced water availability and altered flow regimes threaten the existence and function of these habitats. To test refuge function I conducted a capture-mark-recapture (CMR) study, integrating citizen science angler sampling into fisheries-independent methods. The objectives of this study were twofold: 1) To determine the contribution of citizen science anglers to improving CMR research, and 2.) to quantify apparent survival of Florida Largemouth Bass, Micropterus salmoides floridanus, in a coastal refuge habitat across multiple years of drying severity. The inclusion of angler sampling was determined to be an effective and feasible method for increasing capture probability. Apparent survival of Florida Bass varied among hydrologic periods with lowest survival when marshes functionally dried (< 10 cm). Overall mortality from drying events increased with the duration of marsh drying upstream.

Establishing historical water velocities is a goal of Everglades restoration because of their role maintaining landscape topographic relief. However, flows may also change the trophic state of marshes by phosphorus loading. I used fatty acid (FA) and stoichiometric data to quantify how increased sheet flow altered the relative heterotrophic and autotrophic contributions to aquatic consumers in a field experiment that introduced flowing water to an Everglades marsh in November, 2014. Algal taxonomic composition was different between pre-flow and flow sampling, marked by increases in the nutrient exploiting Mougeotia species (green algae) during flow sampling. Dietary tracer FAs in consumers reflected changes in algal resources, including an increase in green algae-derived and a decrease in bacteria-derived FAs. These food web responses indicate that establishing historic water velocity in degraded wetlands can shift the origins of organic matter from a more detrital to more algal supported web.

The Florida Everglades is a highly diverse socionatural landscape that historically spanned much of the south Florida peninsula. Today, the Florida Everglades is an iconic but highly contested conservation landscape. It is the site of one of the world’s largest publicly funded ecological restoration programs, estimated to cost over $8 billion (U.S. GAO 2007), and it is home to over two million acres of federally protected lands, including the Big Cypress National Preserve and Everglades National Park. However, local people’s values, practices and histories overlap and often conflict with the global and eco-centric values linked to Everglades environmental conservation efforts, sparking environmental conflict. My dissertation research examined the cultural politics of nature associated with two Everglades conservation and ecological restoration projects: 1) the creation and stewardship of the Big Cypress National Preserve, and 2) the Tamiami Trail project at the northern boundary of Everglades National Park. Using multiple research methods including ethnographic fieldwork, archival research, participant observation, surveys and semi-structured interviews, I documented how these two projects have shaped environmental claims-making strategies to Everglades nature on the part of environmental NGOs, the National Park Service and local white outdoorsmen. In particular, I examined the emergence of an oppositional white identity called the Gladesmen Culture. My findings include the following: 1) just as different forms of nature are historically produced, contingent and power-laden, so too are different claims to Everglades nature; 2) identity politics are an integral dimension of Everglades environmental conflicts; and 3) the Big Cypress region’s history and contemporary conflicts are shaped by the broader political economy of development in south Florida. My dissertation concluded that identity politics, class and property relations have played a key, although not always obvious, role in shaping Everglades history and environmental claims-making, and that they continue to influence contemporary Everglades environmental conflicts.

In this study three aspects of sexual reproduction in Everglades plants were examined to more clearly understand seed dispersal and the allocation of resources to sexual reproduction— spatial dispersal process, temporal dispersal of seeds (seedbank), and germination patterns in the dominant species, sawgrass (Cladium jamaicense). Community assembly rules for fruit dispersal were deduced by analysis of functional traits associated with this process. Seedbank ecology was investigated by monitoring emergence of germinants from sawgrass soil samples held under varying water depths to determine the fate of dispersed seeds. Fine-scale study of sawgrass fruits yielded information on contributions to variation in sexually produced propagules in this species, which primarily reproduces vegetatively. It was hypothesized that Everglades plants possess a set of functional traits that enhance diaspore dispersal. To test this, 14 traits were evaluated among 51 species by factor analysis. The factorial plot of this analysis generated groups of related traits, with four suites of traits forming dispersal syndromes. Hydrochory traits were categorized by buoyancy and appendages enhancing buoyancy. Anemochory traits were categorized by diaspore size and appendages enhancing air movement. Epizoochory traits were categorized by diaspore size, buoyancy, and appendages allowing for attachment. Endozoochory traits were categorized by diaspore size, buoyancy, and appendages aiding diaspore presentation. These patterns/trends of functional trait organization also represent dispersal community assembly rules. Seeds dispersed by hydrochory were hypothesized to be caught most often in the edge of the north side of sawgrass patches. Patterns of germination and dispersal mode of all hydrochorous macrophytes with propagules in the seedbank were elucidated by germination analysis from 90 soil samples collected from 10 sawgrass patches. Mean site seed density was 486 seeds/m2 from 13 species. Most seeds collected at the north side of patches and significantly in the outer one meter of the patch edge (p = 0.013). Sawgrass seed germination was hypothesized to vary by site, among individual plants, and within different locations of a plant’s infructescence. An analysis of sawgrass fruits with nested ANOVAs found that collection site and interaction of site x individual plant significantly affect germination ability, seed viability, and fruit size (p < 0.050). Fruit location within a plant’s infructescence did not significantly affect germination. As for allocation of resources to sexual reproduction, only 17.9% of sawgrass seeds germinated and only 4.8% of ungerminated seeds with fleshy endosperm were presumed viable, but dormant. Collectively, only 22% of all sawgrass seeds produced were viable.

Novel ecosystems emerge from alterations to historic abiotic regimes and contain new species combinations. Everglades canals offer an opportunity to understand the function of novel habitat for native and non-native fishes and how novel conditions in turn influence distribution, abundance and assembly patterns. I examined native and non-native fish assemblages collected across a gradient in novelty, defined by the loss of wetland connectivity and habitat complexity. As novelty increased, native species richness and abundance strongly declined, and the contribution of non-natives increased. Community structure vastly differed among canals and was strongly influenced by spatial factors and secondarily by hydrological factors. Natives and non-natives had opposing responses to key hydrologic and habitat parameters. This study represents the first comprehensive assessment of Everglades canal fishes, providing insight into the factors influencing native and non-native abundance and assembly patterns and contributing to our understanding of this novel but permanent habitat.