Using gravity, magnetic, bathymetric and seismic refraction data, I have constructed a geophysical cross-section of the central part of the northern Gulf of California. The section exhibits a crustal thickness of 18 km and features an anomalous block of high density lower basement (3.15 g/cm³) which probably resulted from rifting processes during the opening of the Gulf. The magnetization of the upper basement ranges from 0.0005 to 0.0030 emu/cm³. Three different layers of sediments are modeled, ranging from unconsolidated (1.85 g/cm³) to compacted (2.50 g/cm³). I present a deconvolution method for automated interpretation of magnetic profiles based on Werner's (1953) simplified thin-dike assumption, leading to the linearization of complex nonlinear magnetic problems. The method is expanded by the fact that the horizontal gradient of the total field caused by the edge of a thick interface body is equivalent to the total field of a thin dike. Statistical decision making and a seven point operator are used to insure good approximations of susceptibility, dip, depth, and horizontal location of the source. After using synthetic models to test the inversion method, I applied it to the Northern Gulf of California using data collected in 1984 by the Continental Margins Study Group at Oregon State University. Fault traces, computed by the deconvolution, are plotted on a map. The faulting pattern obtained is in good agreement with that proposed by other workers using other methods. The depths to the top of the faults range from 4 to 5 km in the eastern part of the Gulf, where they may be interpreted as the top of the structural basement. Deeper estimates are obtained for the western part of the Gulf. / Graduation date: 1990

The deep ocean (> 200-m depth) covers more than 65 percent of earth's surface and is known as the largest active carbon sink of the planet. Photosynthesis fixes inorganic carbon into organic rich-compounds to fuel the biological production in the upper ocean. A small portion of the photosynthetic carbon eventually sinks to the seafloor to support diverse deep-sea life. In this dissertation, the phytoplankton production and export flux of particulate organic carbon (POC) to the seafloor were linked to standing stocks and compositional changes of the deep-sea soft bottom assemblages. The pattern and processes of energy transfer from the surface ocean to the deep sea was examined by modeling the global benthic bacteria, meiofauna, macrofauna, and megafauna biomass from remotely sensed ocean color images and the seafloor relief. The analysis was then scaled down to the macrofauna of the Gulf of Mexico (GoM) to examine the global pattern on regional oceanic features with contrasting productivity regimes. These results suggested a universal decline of benthic standing stocks down the continental margins that is caused by an exponential decrease of export POC flux with depth. A revisit of historical epibenthic invertebrate sampling in the North Atlantic showed that both individual species and multi-species assemblages occurred in narrow depth bands that hugged the topography from the upper continental slope out to the Hatteras Abyssal Plain. The continuum compositional change suggested that the continuous decline of benthic food supply with depth was the potential driving force for the pattern of bathymetric faunal zonation. A broad, systematic survey across multiple depth transects in the northern GoM suggested that macrofauna zonation is not only taking place across isobaths, but also form the northeast to the northwest GoM due to a horizontal productivity gradient created by the nutrient-laden Mississippi River. Analyses of long-term demersal fish data from 1964 to 2002 in the northern GoM showed no evidence of large-scale faunal change across different sampling times. Base on the pooled data, a shift in rate of fish species replacement may be caused by complex biological interactions or changes in environmental heterogeneity along depth or productivity gradients.

I investigated how land use and human activities affect the sources and cycling of carbon (C) in subtropical rivers. Annually rivers receive a large amount of terrestrial C, process a portion of this C and return it to the atmosphere as CO 2 . The rest is transported to the ocean. Land use and human activities can affect the sources and fate of terrestrial C in rivers. However, studies on these effects are limited, especially in the humid subtropics. I combined measurements of the partial pressure of dissolved CO 2 (pCO 2 ), C isotopes ( 13 C and 14 C) and solid-state 13 C nuclear magnetic resonance (NMR) to study C cycling in three subtropical rivers in Texas, two small rivers (Buffalo Bayou and Spring Creek) and a midsized river (the Brazos). My pCO 2 data show that small humid subtropical rivers are likely a large source of atmospheric CO 2 in the global C cycle. My measurements on pCO 2 , C isotopic and chemical composition of dissolved inorganic C (DIC) and particulate organic C (POC) revealed four types of effects of land use and human activities on river C cycling. First, oyster shells and crushed carbonate minerals used in road construction are being dissolved and slowly drained into Buffalo Bayou and the lower Brazos and may be a source of river CO 2 released to the atmosphere. Second, river damming and nutrient input from urban treated wastewater stimulate algal growth and reduce CO 2 evasion of the middle Brazos. Third, urban treated wastewater discharge is adding old POC to the middle Brazos and decomposition of the old POC adds to the old riverine DIC pool. Fourth, agricultural activities coupled with high precipitation enhance loss of old organic C (OC) from deep soils to the lower Brazos, and decomposition of the old soil OC contributes to the old CO 2 evaded. I document for the first time the river C cycling effects of the use of carbonate minerals in construction and the riverine discharge of urban wastewater. Results presented here indicate the need to study disturbed river systems to better constrain the global C budget.

Purpose: When the Deepwater Horizon oilrig in the Gulf of Mexico faced disaster in late April 2010, news coverage immediately began of the disaster that would unfold. BP took the blame and its financial resources were strained as it struggled with stopping the oil leak, cleanup work as well as its PR image. While the US took many blows of the consequences to ecosystem and tourism, financial consequences swept across the world, mainly Britain, where BP had its headquarters.The event gives an excellent chance at comparing the media coverage from both the US and Britain. By studying The Daily Telegraph and The New York Times, we want to see both similarities and differences in the themes they focused on as well as seeing trends in the themes over time. Theories: The theory chapter is heavily based around the Agenda-setting theory in the media communication field. Methodology: A quantitative content analysis (QCA) of some 500 news articles in The Daily Telegraph and The New York Times from April 22 to July 15. The QCA was made to find the main theme of articles to give us data on how many articles of each theme, as well as their distribution over time. The collected data was ultimately made into diagrams. Conclusion: The two newspapers have a clear difference in that the New York Times have a more than twice the articles published compared to The Daily Telegraph. They do however both share some trends in the themes with some exceptions. Looking at the distribution of these themes within each newspaper, it’s clear that the British newspaper focused more heavily on BP while the American was focusing more heavily on consequences.

Artificial reefs are becoming a popular biological and management component in shallow water environments characterized by soft seabed, representing both important marine habitats and tools to manage coastal fisheries and resources. An artificial reef in the marine environment acts as an open system with exchange of material and energy, altering the physical and biological characteristics of the surrounding area. Reef stability will depend on the balance of scour, settlement, and burial resulting from ocean conditions over time. Because of the unstable nature of sediments, they require a detailed and systematic investigation. Acoustic systems like high-frequency multibeam sonar are efficient tools in monitoring the environmental evolution around artificial reefs, whereas water turbidity can limit visual dive and ROV inspections. A high-frequency multibeam echo sounder offers the potential of detecting fine-scale distribution of reef units, providing an unprecedented level of resolution, coverage, and spatial definition. How do artificial reefs change over time in relation to the coastal processes? How accurately does multibeam technology map different typologies of artificial modules of known size and shape? How do artificial reefs affect fish school behavior? What are the limitations of multibeam technology for investigating fish school distribution as well as spatial and temporal changes? This study addresses the above questions and presents results of a new approach for artificial reef seafloor mapping over time, based upon an integrated analysis of multibeam swath bathymetry data and geoscientific information (backscatter data analysis, SCUBA observations, physical oceanographic data, and previous findings on the geology and sedimentation processes, integrated with unpublished data) from Senigallia artificial reef, northwestern Adriatic Sea (Italy) and St. Petersburg Beach Reef, west-central Florida continental shelf. A new approach for observation of fish aggregations associated with Senigallia reef based on the analysis of multibeam backscatter data in the water column is also explored. The settlement of the reefs and any terrain change are investigated over time providing a useful description of the local hydrodynamics and geological processes. All the artificial structures (made up by water-based concrete for Senigallia reef and mainly steel for St. Petersburg Beach reef) are identified and those showing substantial horizontal and/or vertical movements are analyzed in detail. Most artificial modules of Senigallia reef are not intact and scour signatures are well depicted around them, indicating reversals of the local current. This is due to both the wind pattern and to the quite close arrangement of the reef units that tend to deflect the bottom flow. As regards to the St. Petersburg Beach reef, all the man-made steel units are still in their upright position. Only a large barge shows a gradual collapse of its south side, and presents well-developed scouring at its east-northeast side, indicating dominant bottom flow from west-southwest to east-northeast. While an overall seafloor depth shallowing of about 0.30 m from down-current deposits was observed for Senigallia reef, an overall deepening of about 0.08 m due to scour was observed at the St. Petersburg Beach reef. Based on the backscatter data interpretation, surficial sediments are coarser in the vicinities of both artificial reefs than corresponding surrounding sediments. Scouring reveals this coarser layer underneath the prevalent mud sediment at Senigallia reef, and the predominant silt sediment at St. Petersburg Beach reef. In the ten years of Senigalia reef study, large-scale variations between clay and silt appear to be directly linked to large flood events that have occurred just prior to the change. As regards the water column investigation, acoustic backscatter from fish aggregations gives detailed information on their morphology and spatial distribution. In addition, relative fish biomass estimates can be extrapolated. Results suggest that most of the fish aggregations are generally associated with the artificial modules showing a tendency for mid- and bottom-water depth distribution than for the surface waters. This study contributes to understanding the changes in artificial reefs over time in relation to coastal processes. Moreover, the preliminary results concerning the water column backscatter data represents progress in fisheries acoustics research as a result of three-dimensional acoustics. They demonstrate the benefits of multibeam sonar as a tool to investigate and quantify size distribution and geometry of fish aggregations associated with shallow marine habitats.

Domoic acid (DA), a potent neurotoxin that has the potential to cause amnesic shellfish poisoning (ASP), is produced by members of the marine diatom genus Pseudo-nitzschia. Outbreaks of ASP in humans and of DA poisoning in birds and marine mammals have been reported across the United States and Canada since the late 1980's. Pseudo-nitzschia species can be extremely abundant in Florida waters, with densities often exceeding 106 cells/L, and sometimes exceeding 107 cells/L. Based on preliminary data, it is evident that at least nine species of Pseudo-nitzschia are found in Florida coastal waters. At least six of these species are known to produce DA in other parts of the world, and some are morphologically identical to some of the major toxin-producing species in Californian and Canadian waters. Despite the strong presence of Pseudo-nitzschia, there has never been a report of ASP or a DA-related animal mortality event from Florida. Data collected from 2004 to 2011 show maximum Pseudo-nitzschia abundances exceeded 4 x 107 cells/L. Six species of Pseudo-nitzschia were identified from central west and southwest Florida waters via light and electron microscopy. This is the first report of P. micropora from the Gulf of Mexico. Additionally P. calliantha, P. cuspidata, and P. pungens were identified as producers of DA in Florida coastal waters; although cell quotas of DA were low. Low levels of DA were detected in about one third of the water samples analyzed and DA concentrations measured in the majority of shellfish from the study area were at least an order of magnitude below the regulatory limit of 20 µg/g, suggesting that Pseudo-nitzschia currently poses little threat to human health in Florida. However, DA production in Pseudo-nitzschia species has been shown to be variable and dependent on nutrient conditions, indicating that the potential for DA-related events to occur in Florida warrants further investigation.

The objectives of this study were to measure injuries and impairments directly observed from gags Mycteroperca microlepis caught and released within a large-scale recreational fishery, develop methods that may be used to rapidly assess the condition of reef fish discards, and estimate the total portion of discards in the fishery that suffer latent mortality. Fishery observers were placed on for-hire charter and headboat vessels operating in the Gulf of Mexico from June 2009 through December 2012 to directly observe reef fishes as they were caught by recreational anglers fishing with hook-and-line gear. Fish that were not retained by anglers were inspected and marked with conventional tags prior to release. Fish were released in multiple regions over a large geographic area throughout the year and over multiple years. The majority of recaptured fish were reported by recreational and commercial fishers, and fishing effort fluctuated both spatially and temporally over the course of this study in response to changes in recreational harvest restrictions and the Deepwater Horizon oil spill. Therefore, it could not be assumed that encounter probabilities were equal for all individual tagged fish in the population. Fish size and capture depth when fish were initially caught-and-released also varied among individuals in the study and potentially influenced recapture reporting probabilities. The Cox proportional hazards regression model was used to control for potential covariates on both the occurrence and timing of recapture reporting events so that relative survival among fish released in various conditions could be compared. A total of 3,954 gags were observed in this study, and the majority (77.26%) were released in good condition (condition category 1), defined as fish that immediately submerged without assistance from venting and had not suffered internal injuries from embedded hooks or visible damage to the gills. However, compared to gags caught in shallower depths, a greater proportion of gags caught and released from depths deeper than 30 meters were in fair or poor condition. Relative survival was significantly reduced (alpha (underline)<(/underline)0.05) for gags released in fair and poor condition after controlling for variable mark-recapture reporting rates for different sized discards among regions and across months and years when individual fish were initially captured, tagged and released. Gags released within the recreational fishery in fair and poor condition were 66.4% (95% C.I. 46.9 to 94.0%) and 50.6% (26.2 to 97.8%) as likely to be recaptured, respectively, as gags released in good condition. Overall discard mortality was calculated for gags released in all condition categories at ten meter depth intervals. There was a significant linear increase in estimated mortality from less than 15% (range of uncertainty, 0.1-25.2%) in shallow depths up to 30 meters, to 35.6% (5.6-55.7%) at depths greater than 70 meters (p < 0.001, R2 = 0.917). This analysis demonstrated the utility of the proportional hazards regression model for controlling for potential covariates on both the occurrence and timing of recapture events in a large-scale mark-recapture study and for detecting significant differences in the relative survival of fish released in various conditions measured under highly variable conditions within a large-scale fishery.

Populations of black mangroves (Avicennia sp.) are hypothesized to expand their latitudinal range with global climate change in the 21st century, induced by a reduction in the frequency and severity of coastal freezes, which are known to limit mangrove colony extent and individual tree size, as well as an overall warmer climate. The Gulf of Mexico is located at the northward limit of black mangrove habitat and is therefore a prime candidate for population expansion with global warming. This expansion may come at the expense of existing Gulf coastal saline wetlands that are dominantly Spartina spp. marsh grasses. The present study was conducted to focus, not on the extent to date of this replacement, but to examine the potential implications of a marsh to mangrove transition in Gulf wetlands, specifically 1) resistance to accelerating eustatic sea level rise (ESLR) rates, 2) wetland resistance to wave attack in large storms (increased cyclonic storm frequency/intensity is predicted with future climate warming), and 3) organic carbon sequestration and wetland soil geochemistry. Field sites of adjacent and intergrown Avicennia mangrove and Spartina marsh populations in similar geomorphological setting were selected in back-barrier areas near Port Aransas and Galveston, TX (two sites each) as part of a larger-scale planned study of the full latitudinal transition of the western Gulf funded by the National Institute for Climate Change Research (U.S. Department of Energy). The reconnaissance conducted for site surveys show that black mangrove populations in this part of Texas are clustered near inlet areas, suggesting seed transport vectors are a major control on colony establishment, and likely, on the potential rapidity of wetland habitat replacement. Resistance to ESLR was tested by 1) creating high-accuracy (±1 cm) elevation maps over ~5,000 m² areas of adjacent mangrove and marsh areas, and 2) measuring mineral and organic matter accumulation rates (Pb/Cs radiotracer geochronology, loss on ignition) from auger cores. Elevation surveys in Port Aransas indicate mangrove vegetated areas are 4 cm higher in elevation than surrounding marsh on an average regional scale, and 1 to 2 cm higher at the individual mangrove scale: at the Galveston sites, any trend is complicated by the area's pre-existing geomorphology and the relative youth of the mangrove colonies. ¹³⁷Cs accumulation rates and loss on ignition data indicate that mineral trapping is 4.1 times higher and sediment organics are 1.7 times lower in mangroves at Port Aransas; no such definable trends exist at the Galveston sites or in calculated ²¹⁰Pb sediment accumulation rates. This additional mineral particle trapping in mangroves does not differ in grain size character from marsh mineral accumulation. Elevation change may also be effected by root volume displacement: live root weight measurements in the rooted horizon (~0 to 20 cm depth) are consistently higher in mangrove cores from Port Aransas and the site at the west end of Galveston Island. Port Aransas porosities are lower in mangrove rooted horizons, with a corresponding increase in sediment strength (measured by shear vane in the cores), suggesting mangrove intervals may be more resistant to wave-induced erosion during storm events. Port Aransas mangroves exhibit higher pore water redox potentials and salinities over entire core depths and depressed pH over rooted intervals, suggesting a distinct diagenetic environment exists relative to marsh sites. Increased salinities and higher redox potentials may be a function of the rooting network, which introduces oxygen into the sediment and focuses evapo-transpiration and salt exclusion within this zone: this may prove advantageous when competing with marsh grasses by elevating salinities to levels that are toxic for Spartina. Trends observed in the more mature systems of Port Aransas are generally absent at the Galveston sites, suggesting the youth and physically shorter stature of these systems means they have not yet established a unique sediment signature. / text

Mixtures of bacterial and thermogenic methane are found both at vents at the seafloor and in reservoirs in the deep subsurface of the Gulf of Mexico continental slope. The C1-C5 gas that most recently charged reservoirs of Jolliet (GC 184), Genesis (GC 160/161) and Petronius (VK 786) fields is estimated to include 17%-28%, 31%-51%, 31%-49% bacterial methane, respectively. Geochemical assessment of the reservoir gas in the fields show that the gas may be the product of thermal cracking of Upper Jurassic crude oil before final migration to the reservoirs. The gas from three different fields is of similar thermal maturity levels. In contrast to oil in reservoirs in the fields, which shows biodegradation effects, the C1-C5 reservoir gas is unaltered by biodegradation. Late gas migration may have occurred at or near present burial depth and flushed the reservoir system of previously biodegraded hydrocarbon gas to include any previous bacterial methane. Molecular and isotopic properties of reservoir gas and oil suggest that bacterial methane mixed with thermogenic hydrocarbon gas before entering the reservoirs. Thus the source of the bacterial methane is logically deeper than the present depth (>~4 km) and temperatures of the reservoirs. High sedimentation rate and low geothermal gradient may offer conditions favorable for generation and preservation of bacterial methane in deep subsurface petroleum system of the Gulf slope. Bacterial methane dispersed across the large drainage areas of the deep subsurface petroleum system may have been swept by migrating fluids at >4 km, and then charged both vents (GC 185, GC 233 and GC 286) at the seafloor and reservoirs in the deep subsurface. The volume of bacterial methane from geologically significant depth in rapidly subsiding basins may be underestimated.

Using cryogenic SEM, we investigated the physical states of gas-hydrate-bearing samples recovered by drill core from several localities including the SE India margin (NGHP Expedition 01), Cascadia margin (IODP Leg 311), Gulf of Mexico (RV Marion Dufresne 2002), and Mackenzie River Delta (Mallik site, well 5L-38). Core material with a significant fraction of preserved hydrate has only been obtained for cryogenic SEM investigation from relatively few sites worldwide to date, yet certain consistent textural characteristics, as well as some clear differences between sites have been observed. Gas hydrate in cores recovered from Cascadia, Gulf of Mexico, and Mallik often occurs as a dense substrate with typical grain size of 30 to as large as 200 μm. The hydrate often contains a significant fraction of isolated macropores that are typically 5–100 μm in diameter and occupy 10-30 vol. % of the domain. In fine-grained sediment sections of marine samples, gas hydrate commonly forms small pods or lenses with clay platelets oriented sub-parallel around them, or as thin veins 50 to several hundred microns in thickness. In some sections, hydrate grains are delineated by a NaCl-bearing selvage that forms thin rinds along hydrate grain exteriors, presumably produced by salt exclusion during original hydrate formation. Preliminary assessment of India NGHP-01 samples shows some regions consistent with the observations described above, as well as other regions dominated by highly faceted crystals that line the walls or interior of cavities where the hydrate grows unimpeded. Here, we focus on gas hydrate grain morphology and microstructures, pore characteristics and distribution, and the nature of the hydrate/sediment grain contacts of the recovered samples, comparing them to each other and to laboratory-produced gas hydrates grown under known conditions.