Thesis (M.S.)--Villanova University, 2010. / Biology Dept. Includes bibliographical references.

In C. elegans, the germline is a tightly regulated tissue where silencing pathways regulate genes, allowing expression of “self” while silencing “non-self.” Doublestranded RNAs (dsRNAs), short interfering RNAs (siRNAs), and piwi-associated RNAs (piRNAs) can transmit this regulation across generations via transgenerational epigenetic inheritance (TEI) mechanisms (Bošković and Rando, 2018). Analogously, some pathways can counteract gene silencing to allow sustained expression in the germline. One such example is a non-coding DNA structure called Periodic An/Tn clusters that can prevent the silencing of transgenes in the germline (Frøkjær-Jensen et al., 2016). In this thesis, I developed a novel piRNA-based tool called piRNA interference (piRNAi), where target-specific short “guide” piRNAs (sg-piRNAs) can robustly silence endogenous genes and transgenes. I have used piRNAi to understand the rules for licensing gene expression and transgenerational epigenetic inheritance in the C. elegans germline. Initially, I describe design rules for generating transgenes with PATC-rich introns that resist germline silencing and are robustly expressed from extrachromosomal arrays. PATC-rich transgenes showed more accurate gene expression patterns and did not prevent germline regulation by 3’ untranslated regions (3’ UTRs). Next, I developed the piRNAi technique to understand the role of PATCs in licensing transgene expression and the rules for how endogenous genes can be targeted for piRNA-mediated silencing and TEI. I demonstrate that a PATC-rich gfp transgene and endogenous genes are not resistant to piRNA-mediated silencing. Finally, I used piRNAi to define rules for TEI: 1. I identified two new endogenous targets for TEI (him-5 and him-8) that can inherit silencing for four and six generations respectively, after transient exposure to sg-piRNAs. 2. I demonstrate that an endogenous gene (him-5) can be semi-permanently silenced in the absence of the piRNA/PRG-1 pathway. 3. The duration of TEI was significantly shortened in a transgene that contained PATC-rich introns. Altogether, my thesis shows that an endogenous small RNA pathway can be reprogrammed to silence endogenous genes and transgenes in the germline, which enables novel experimental paradigms for studying inherited and semipermanent silencing.

As conexinas (Cx) compõem as junções comunicantes do tipo gap, entre elas a Cx43 é a mais prevalente. A diminuição de sua expressão está relacionada com diversas alterações fisiológicas. Sua importância in vivo foi relatada em camundongos com deleção de um dos alelos de Cx43 (Cx43+/-), pois os animais Cx43-/- não são viáveis. Devido esta inviabilidade técnica, os estudos com essa proteína foram realizados com animais Cx43+/-. Assim, este trabalho propõe a criação de um modelo transgênico para o estudo da Cx43. Para isso, o gene Cx43 foi reintroduzido ao genoma murino, porém regulado pelo sistema induzido por doxiciclina TetOn. Vetores de expressão gênica foram construídos e validados quanto sua funcionalidade in vitro e posterior transferencia para zigotos murinos por meio de microinjeção pronuclear. Obtivemos sucesso na construção do sistema de expressão. A funcionalidade dos vetores foi confirmada in vitro utilizando células HeLa e E10. Nos experimentos in vivo, apesar das taxas adequadas de nascimento nenhum deles apresentou genótipo positivo para o transgene. / The connexins (Cx) comprise gap junctions type, and the Cx43 is the most prevalent. The decrease of its expression is related to various physiological changes. Its importance in vivo has been reported in mice with deletion of one allele of Cx43 (Cx43+/-), because the animals Cx43-/- are not viable. So all studies with this protein were performed with animals Cx43+/-. Thus, this paper proposes the creation of new a transgenic model for the study of Cx43 protein. For this, the Cx43 gene was reintegrated to the murine genome, but drived by doxycycline Teton inducible system. Gene expression vectors were constructed and validated in vitro and subsequent transfer to mouse zygotes by pronuclear microinjection. We got success in vector construction and functionality. The functionality of the vectors was confirmed in vitro using HeLa cells and E10. In experiments in vivo, despite adequate rates of birth, no one animal showed positive genotype for the transgene.

Mosquitos transgênicos incapazes de transmitir malária podem ser um controle alternativo, mas atualmente não estão disponíveis. O estudo da interação mosquitopatógeno é importante para melhorar o desenho de genes. A proteína circumsporozoita (CSP) tem dois domínios conservados que podem estar envolvidos na penetração dos esporozoítos na glândula salivar. Nosso objetivo foi expressar peptídeos contendo essas regiões na hemolinfa do mosquito usando o sistema de expressão transiente vírus Sindbis e a tecnologia de transgênese. Se a CSP está envolvida neste processo, os peptídeos competirão com spz impedindo a penetração. Cinco vírus sindbis e quatro linhagens transgênicas foram construídos e desafiados por P. gallinaceum. Nossos resultados mostram que os peptídeos não impediram a penetração de spz na glândula salivar, principalmente porque os peptídeos recombinantes não foram produzidos ou detectados. Aprimorar o desenho de genes, usando a otimização de códons e outras tecnologias, será essencial para a expressão de proteínas exógenas em mosquitos transgênicos. / Transgenic mosquitoes that impair malaria transmission can be an alternative control but currently an effective line is not available. A better understanding of mosquito interaction with pathogens is very important to improve refractory transgene design. Circumsporozoite protein (CSP) has two conserved domains that could be involved in spz penetration into mosquito salivary glands. Our aim was to express peptides encompassing these conserved regions in the mosquito hemolymph using Sindbis virus transient expression system and transgenesis technology. If CSP is involved in this process these peptides will compete with sporozoites impairing its penetration. Five Sindbis virus and four transgenic lines were constructed and challenged with P. gallinaceum. Our results showed these peptides could not impair sporozoites penetration in salivary glands, mainly because the recombinant proteins could not be produced or detected. Improving transgene design using codon usage and other technologies will be essential for expressing foreign proteins in transgenic mosquitoes.

Novas alternativas são necessárias para controlar o mosquito transmissor da dengue, como a manipulação genética. Baseada na técnica do inseto estéril (SIT) que compreende a esterilização, a criação em massa e a liberação de grandes números de insetos machos estéreis em uma área alvo, a tecnologia RIDL, baseada em SIT, compreende criação em massa e liberação de mosquitos machos que carregam gene letal para sua prole, neste caso a linhagem OX513A de Aedes aegypti é testada nesse projeto, através da avaliação em testes laboratoriais e em testes de campo com marcação liberação e recaptura, comparando esta linhagem com linhagens selvagens. Foi mensurada a competitividade, longevidade e dispersão. Os testes foram realizados no bairro de Itaberaba (Juazeiro/BA) e na Universidade de São Paulo. Além da avaliação foi realizado o monitoramento com armadilhas ovitrampa, captura de mosquitos adultos com aspirações em residências. E o desenvolvimento de um plano de comunicação para a sociedade. Os resultados apontam que a compatibilidade entre as linhagens (transgênica e selvagem) foi positiva e a competitividade não apresentou tendência entre as fêmeas de escolherem uma linhagem ou outra. Estatisticamente não há diferença entre o número de ovos e larvas (logo a fertilidade) entre a linhagem selvagem e transgênica. O monitoramento da área de estudo confirmou a presença de A. aegypti, e não foi capturado nenhum indivíduo de Aedes albopictus. Para avaliar a dispersão, os mosquitos machos transgênicos foram liberados no ambiente e esses apresentaram uma sobrevivência no campo de 2,3 dias e um raio de vôo de 80 metros do ponto de liberação. O índice de esterilidade relativa foi determinado baseado na competitividade e proporção de ovos fluorescentes encontrados. Foi possível estabelecer uma produção em massa para realizar a fase de pré-supressão com a liberação de 540.000 machos ao longo de seis semanas e obtenção de 17% de larvas transgênicas oriundas do cruzamento desses machos com fêmeas do campo. Baseado nesses dados iniciou-se a fase de supressão com a liberação alvo de 400.000 por semana, aproximadamente 05 vezes mais esperando alcançar o estágio de supressão. / New alternatives are needed to control mosquitoes that transmit Dengue. Based on insect technique Sterile (SIT), which comprises sterilizing, mass rearing and release a large number of sterile males in an area target, RIDL technology based on SIT, but using transgenesis instead of radiation. Doing the same process for mass rearing and release of male mosquitoes carrying lethal gene to their offspring, in this case the strain OX513A of Aedes aegypti is under test in this project, through the evaluation of laboratory and field trials with mark-release-recapture (MRR), comparing transgenic with wild-type. We measured competitiveness, longevity and dispersal. The tests were performed in Itaberaba neighborhood (Juazeiro / BA) and at University of São Paulo. The evaluation was carried out with monitoring through ovitraps and adult mosquitoes collection with aspiration in houses. It was also developed a communication plan to society/community in general. The results indicate that the compatibility between the lines (transgenic and wild-type) was positive, and competitiveness showed no trend among females to choose one lineage or another. Statistically there were no difference between the number of eggs and larvae (resulting fertility) between the transgenic line and wild-type. The study area monitoring confirmed the presence of Ae. aegypti, and no Aedes albopictus was captured. To evaluate dispersion, transgenic males were released into the environment and they showed a field survival of 2.3 days and a flight range of 80 meters from the release point. The relative sterility index was determined based on the competitiveness and fluorescent proportion of eggs. Mass production was established to perform the pre-suppression phase releasing 540,000 males over six weeks and obtaining 17% of transgenic larvae in response of transgenic males mating field females. Based on these data suppression process have started with a release target of 400,000 per week, this is about 05 times more to reach the suppression stage briefly.

Mosquitos transgênicos incapazes de transmitir malária podem ser um controle alternativo, mas atualmente não estão disponíveis. O estudo da interação mosquitopatógeno é importante para melhorar o desenho de genes. A proteína circumsporozoita (CSP) tem dois domínios conservados que podem estar envolvidos na penetração dos esporozoítos na glândula salivar. Nosso objetivo foi expressar peptídeos contendo essas regiões na hemolinfa do mosquito usando o sistema de expressão transiente vírus Sindbis e a tecnologia de transgênese. Se a CSP está envolvida neste processo, os peptídeos competirão com spz impedindo a penetração. Cinco vírus sindbis e quatro linhagens transgênicas foram construídos e desafiados por P. gallinaceum. Nossos resultados mostram que os peptídeos não impediram a penetração de spz na glândula salivar, principalmente porque os peptídeos recombinantes não foram produzidos ou detectados. Aprimorar o desenho de genes, usando a otimização de códons e outras tecnologias, será essencial para a expressão de proteínas exógenas em mosquitos transgênicos. / Transgenic mosquitoes that impair malaria transmission can be an alternative control but currently an effective line is not available. A better understanding of mosquito interaction with pathogens is very important to improve refractory transgene design. Circumsporozoite protein (CSP) has two conserved domains that could be involved in spz penetration into mosquito salivary glands. Our aim was to express peptides encompassing these conserved regions in the mosquito hemolymph using Sindbis virus transient expression system and transgenesis technology. If CSP is involved in this process these peptides will compete with sporozoites impairing its penetration. Five Sindbis virus and four transgenic lines were constructed and challenged with P. gallinaceum. Our results showed these peptides could not impair sporozoites penetration in salivary glands, mainly because the recombinant proteins could not be produced or detected. Improving transgene design using codon usage and other technologies will be essential for expressing foreign proteins in transgenic mosquitoes.

Novas alternativas são necessárias para controlar o mosquito transmissor da dengue, como a manipulação genética. Baseada na técnica do inseto estéril (SIT) que compreende a esterilização, a criação em massa e a liberação de grandes números de insetos machos estéreis em uma área alvo, a tecnologia RIDL, baseada em SIT, compreende criação em massa e liberação de mosquitos machos que carregam gene letal para sua prole, neste caso a linhagem OX513A de Aedes aegypti é testada nesse projeto, através da avaliação em testes laboratoriais e em testes de campo com marcação liberação e recaptura, comparando esta linhagem com linhagens selvagens. Foi mensurada a competitividade, longevidade e dispersão. Os testes foram realizados no bairro de Itaberaba (Juazeiro/BA) e na Universidade de São Paulo. Além da avaliação foi realizado o monitoramento com armadilhas ovitrampa, captura de mosquitos adultos com aspirações em residências. E o desenvolvimento de um plano de comunicação para a sociedade. Os resultados apontam que a compatibilidade entre as linhagens (transgênica e selvagem) foi positiva e a competitividade não apresentou tendência entre as fêmeas de escolherem uma linhagem ou outra. Estatisticamente não há diferença entre o número de ovos e larvas (logo a fertilidade) entre a linhagem selvagem e transgênica. O monitoramento da área de estudo confirmou a presença de A. aegypti, e não foi capturado nenhum indivíduo de Aedes albopictus. Para avaliar a dispersão, os mosquitos machos transgênicos foram liberados no ambiente e esses apresentaram uma sobrevivência no campo de 2,3 dias e um raio de vôo de 80 metros do ponto de liberação. O índice de esterilidade relativa foi determinado baseado na competitividade e proporção de ovos fluorescentes encontrados. Foi possível estabelecer uma produção em massa para realizar a fase de pré-supressão com a liberação de 540.000 machos ao longo de seis semanas e obtenção de 17% de larvas transgênicas oriundas do cruzamento desses machos com fêmeas do campo. Baseado nesses dados iniciou-se a fase de supressão com a liberação alvo de 400.000 por semana, aproximadamente 05 vezes mais esperando alcançar o estágio de supressão. / New alternatives are needed to control mosquitoes that transmit Dengue. Based on insect technique Sterile (SIT), which comprises sterilizing, mass rearing and release a large number of sterile males in an area target, RIDL technology based on SIT, but using transgenesis instead of radiation. Doing the same process for mass rearing and release of male mosquitoes carrying lethal gene to their offspring, in this case the strain OX513A of Aedes aegypti is under test in this project, through the evaluation of laboratory and field trials with mark-release-recapture (MRR), comparing transgenic with wild-type. We measured competitiveness, longevity and dispersal. The tests were performed in Itaberaba neighborhood (Juazeiro / BA) and at University of São Paulo. The evaluation was carried out with monitoring through ovitraps and adult mosquitoes collection with aspiration in houses. It was also developed a communication plan to society/community in general. The results indicate that the compatibility between the lines (transgenic and wild-type) was positive, and competitiveness showed no trend among females to choose one lineage or another. Statistically there were no difference between the number of eggs and larvae (resulting fertility) between the transgenic line and wild-type. The study area monitoring confirmed the presence of Ae. aegypti, and no Aedes albopictus was captured. To evaluate dispersion, transgenic males were released into the environment and they showed a field survival of 2.3 days and a flight range of 80 meters from the release point. The relative sterility index was determined based on the competitiveness and fluorescent proportion of eggs. Mass production was established to perform the pre-suppression phase releasing 540,000 males over six weeks and obtaining 17% of transgenic larvae in response of transgenic males mating field females. Based on these data suppression process have started with a release target of 400,000 per week, this is about 05 times more to reach the suppression stage briefly.

As conexinas (Cx) compõem as junções comunicantes do tipo gap, entre elas a Cx43 é a mais prevalente. A diminuição de sua expressão está relacionada com diversas alterações fisiológicas. Sua importância in vivo foi relatada em camundongos com deleção de um dos alelos de Cx43 (Cx43+/-), pois os animais Cx43-/- não são viáveis. Devido esta inviabilidade técnica, os estudos com essa proteína foram realizados com animais Cx43+/-. Assim, este trabalho propõe a criação de um modelo transgênico para o estudo da Cx43. Para isso, o gene Cx43 foi reintroduzido ao genoma murino, porém regulado pelo sistema induzido por doxiciclina TetOn. Vetores de expressão gênica foram construídos e validados quanto sua funcionalidade in vitro e posterior transferencia para zigotos murinos por meio de microinjeção pronuclear. Obtivemos sucesso na construção do sistema de expressão. A funcionalidade dos vetores foi confirmada in vitro utilizando células HeLa e E10. Nos experimentos in vivo, apesar das taxas adequadas de nascimento nenhum deles apresentou genótipo positivo para o transgene. / The connexins (Cx) comprise gap junctions type, and the Cx43 is the most prevalent. The decrease of its expression is related to various physiological changes. Its importance in vivo has been reported in mice with deletion of one allele of Cx43 (Cx43+/-), because the animals Cx43-/- are not viable. So all studies with this protein were performed with animals Cx43+/-. Thus, this paper proposes the creation of new a transgenic model for the study of Cx43 protein. For this, the Cx43 gene was reintegrated to the murine genome, but drived by doxycycline Teton inducible system. Gene expression vectors were constructed and validated in vitro and subsequent transfer to mouse zygotes by pronuclear microinjection. We got success in vector construction and functionality. The functionality of the vectors was confirmed in vitro using HeLa cells and E10. In experiments in vivo, despite adequate rates of birth, no one animal showed positive genotype for the transgene.

Yu, Chun Wai. / Thesis (M.Phil.)--Chinese University of Hong Kong, 2008. / Includes bibliographical references (leaves 115-124). / Abstracts in English and Chinese. / ACKNOWLEDGEMENTS --- p.iii / ABSTRACT --- p.iv / LIST OF CONTENTS --- p.ix / LIST OF FIGURES --- p.xvi / LIST OF TABLES --- p.xx / LIST OF ABBREVIATIONS --- p.xxi / Chapter CHAPTER 1. --- GENERAL INTRODUCTION --- p.20 / Chapter CHAPTER 2. --- LITERATURE REVIEW --- p.22 / Chapter 2.1 --- Major storage proteins in rice --- p.22 / Chapter 2.1.1 --- Structure and composition of glutelin --- p.22 / Chapter 2.1.2 --- Structure and composition of prolamin --- p.22 / Chapter 2.2 --- Biosynthesis pathway --- p.23 / Chapter 2.2.1 --- "The Biosynthesis, processing & compartmentalization of glutelin" --- p.23 / Chapter 2.2.1.1 --- Endoplasmic reticulum as the site of protein folding and compartmentalization --- p.23 / Chapter 2.2.1.2 --- COP-coated vesicles for protien trafficking between ER and Golgi --- p.25 / Chapter 2.2.1.3 --- Glutelin trafficking beyond ER --- p.26 / Chapter 2.2.1.3.1 --- Golgi as the site of post-translational modification of glutelin / Chapter 2.2.1.3.1.1 --- """Sorting for entry"" and ""sorting by retention"" models: mechanism of dense vesicle formation" --- p.26 / Chapter 2.2.1.3.1.2 --- "“Classical ligand-receptor"" and ""aggregation-mediated"" as the model describing protein sorting in Golgi" --- p.27 / Chapter 2.2.1.3.2 --- Pathway bypassing Golgi apparatus --- p.30 / Chapter 2.2.1.4 --- Prevacuolar compartment and protein body --- p.30 / Chapter 2.2.2 --- "The Biosynthesis, processing and compartmentalization of prolamin" --- p.31 / Chapter 2.3 --- Protein processing enzymes --- p.31 / Chapter 2.3.1 --- Luminal chaperone binding protein (BiP) --- p.31 / Chapter 2.3.2 --- Protein disulfide isomerase (PDI) --- p.33 / Chapter 2.4 --- ER quality control： unfolded protein response --- p.34 / Chapter 2.4.1 --- The importance of quality control in ER --- p.34 / Chapter 2.4.2 --- The target of ER quality control: misfolded protein --- p.35 / Chapter 2.4.3 --- Unfolded protein response --- p.36 / Chapter 2.4.3.1 --- IRE1 --- p.37 / Chapter 2.4.3.2 --- PERK --- p.37 / Chapter 2.4.3.3 --- ATF6 --- p.38 / Chapter 2.4.3.4 --- BiP as the master regulator of three transducers --- p.38 / Chapter 2.5 --- The cause of chalkiness --- p.41 / Chapter 2.5.1 --- "The relationship between ER stress, unfolded protein response and chalkiness" --- p.42 / Chapter 2.6 --- Organelle separation： sucrose density gradient centrifugation --- p.43 / Chapter 2.6.1 --- General introduction --- p.43 / Chapter 2.6.2 --- Plant organelle separation --- p.43 / Chapter 2.6.3 --- Organelle marker enzyme as a mean to elucidate the homogeneity of isolated organelle fraction --- p.44 / Chapter 2.7 --- Rice grain quality improvement by genetic engineering --- p.45 / Chapter 2.7.1 --- Increase in lysine content of rice endosperm --- p.45 / Chapter 2.7.2 --- Physiological and phenotypic changes in GT and LRP-fusion lines --- p.46 / Chapter 2.8 --- Hypotheses and objectives --- p.48 / Chapter CHAPTER 3. --- MATERIALS AND METHODS --- p.49 / Chapter 3.1 --- Materials --- p.49 / Chapter 3.1.1 --- Chemicals and commercial kits --- p.49 / Chapter 3.1.2 --- Instruments --- p.49 / Chapter 3.1.3 --- Plant materials --- p.49 / Chapter 3.1.3.1 --- Glutelin-enriched line (GT) --- p.50 / Chapter 3.1.3.2 --- Gtl-LRP-fusion line (LRP fusion) --- p.50 / Chapter 3.2 --- RNA extraction and northern-blot analysis --- p.50 / Chapter 3.2.1 --- Seed harvesting and RNA extraction --- p.50 / Chapter 3.2.2 --- Northern-blot analysis --- p.51 / Chapter 3.3 --- SDS-PAGE and western-blot analysis --- p.52 / Chapter 3.3.1 --- Seed harvesting and protein extraction --- p.52 / Chapter 3.3.2 --- SDS-PAGE and western-blot analysis s --- p.52 / Chapter 3.4 --- Purification of cellular organelles by SDG centrifugation --- p.53 / Chapter 3.4.1 --- Purification of ER by SDG centrifugation --- p.53 / Chapter 3.4.2 --- Purification of protein body by SDG centrifugation --- p.54 / Chapter 3.4.3 --- Protein body isolation by pepsin treatment --- p.54 / Chapter 3.5 --- Electron-microscopic observation --- p.55 / Chapter 3.5.1 --- Sample preparation for immuno-localization analysis --- p.55 / Chapter 3.5.1.1 --- Sample preparation --- p.55 / Chapter 3.5.1.2 --- Immunocytochemical observation --- p.55 / Chapter 3.5.2 --- Sample preparation for structural analysis --- p.56 / Chapter 3.6 --- Antibodies --- p.56 / Chapter 3.6.1 --- KLH conjugation of synthetic peptide --- p.57 / Chapter 3.6.2 --- Immunization of rabbits --- p.57 / Chapter 3.6.3 --- Antibody purification by affinity column --- p.57 / Chapter 3.6.3.1 --- Preparation of column for coupling --- p.57 / Chapter 3.6.3.2 --- Affinity purification of antibody by prepared column --- p.58 / Chapter 3.6.4 --- Testing of antibody specificity --- p.58 / Chapter CHAPTER 4. --- RESULTS --- p.60 / Chapter 4.1 --- Pro-glutelin accumulation in GT and LRP fusion transgenic lines --- p.60 / Chapter 4.2 --- General morphology and glutelin localization in rice seed --- p.61 / Chapter 4.3 --- "Studies on glutelin, BiP and pdi expression profiles of GT, LRP fusion lines and wild type rice" --- p.63 / Chapter 4.3.1 --- Comparison of the protein and RNA profiles of BiP between wild type and FH transgenic rice lines --- p.64 / Chapter 4.3.2 --- Comparison of the protein and RNA profiles of PDI between wild type and FH transgenic rice lines --- p.66 / Chapter 4.3.3 --- "Comparison of the RNA and protein profiles of BiP between wild type, GH and GL transgenic rice lines" --- p.68 / Chapter 4.3.4 --- "Comparison of the RNA and protein expression profiles of PDI between wild type, GH and GL transgenic lines" --- p.70 / Chapter 4.3.5 --- Summary of RNA and protein level comparison of different transgenic lines with wild type --- p.72 / Chapter 4.4 --- Electron microscopic studies of morphological changes in GLUTELIN OVER-EXPRESSED AND GT1-LRP-FUSION TRANSGENIC LINES AND WILD type rice --- p.73 / Chapter 4.5 --- Isolation of ER-enriched fractions by sucrose density gradient centrifugation --- p.76 / Chapter 4.5.1 --- Cross-contamination assessment by organelle specific marker proteins --- p.77 / Chapter 4.5.2 --- Identification of ER enriched fractions of different transgenic lines --- p.78 / Chapter 4.5.3 --- Studies on ER enriched fraction --- p.85 / Chapter 4.6 --- Isolation and studies on PB enriched fractions of different transgenic lines --- p.91 / Chapter 4.7 --- TEM studies on immuno-localization of ER chaperones (BlP and pdI) in immature rice seeds of different transgenic lines --- p.94 / Chapter CHAPTER 5. --- DISCUSSIONS --- p.101 / Chapter 5.1 --- Distortion of glutelin processing and translocation pathway --- p.101 / Chapter 5.1.1 --- The relationship between proglutelin localization and novel protein body in Gt1-LRP-fusion lines --- p.101 / Chapter 5.1.2 --- The presence of BiP and PDI in novel protein body in Gt1-LR-fusion lines --- p.103 / Chapter 5.1.2.1 --- Glutelin translocation pathway bypassing Golgi --- p.105 / Chapter 5.1.2.2 --- Glutelin translocation pathway through Golgi --- p.105 / Chapter 5.1.2.3 --- Gt1-LRP-fusion protein and proglutelin are trapped in ER --- p.107 / Chapter 5.2 --- "The relationship between novel protein body formation, ER stress, unfolded protein response and chalkiness" --- p.108 / Chapter 5.2.1 --- Relationship between novel protein body formation and unfolded protein response --- p.108 / Chapter 5.2.2 --- Repressing the expression of other storage proteins: consequence of unfold protein response or protein nutrients regulation --- p.109 / Chapter 5.2.3 --- Relationship between novel protein body formation and chalkiness --- p.110 / Chapter 5.3 --- The causes of ER dilation --- p.110 / Chapter 5.4 --- The relationship between different physiological changes in transgenic glutelin lines --- p.111 / Chapter 5.5 --- Future perspectives --- p.112 / Chapter CHAPTER 6. --- CONCLUSIONS --- p.114 / REFERENCES --- p.115 / APPENDIX --- p.125

Thesis (Ph. D.)--University of Washington, 1998. / Vita. Includes bibliographical references (leaves [116]-129).