Dissertation (Ph.D. in Physical Oceanography)--Naval Postgraduate School, June 2010. / Dissertation supervisor: Thornton, Edward B. "June 2010." Description based on title screen as viewed on July 16, 2010. Author(s) subject terms: Rip channels, megacusps, alongshore sediment transport, morphodynamics, XBeach, surf-zone video, correlations, infragravity, VLF. Includes bibliographical references (p. 103-108). Also available in print.

京都大学 / 0048 / 新制・課程博士 / 博士(工学) / 甲第18275号 / 工博第3867号 / 新制||工||1593(附属図書館) / 31133 / 京都大学大学院工学研究科原子核工学専攻 / (主査)教授 福山 淳, 教授 功刀 資彰, 准教授 村上 定義 / 学位規則第4条第1項該当 / Doctor of Philosophy (Engineering) / Kyoto University / DFAM

As the impacts of human activities increase sediment transport by aquatic systems the need to accurately quantify this transport becomes paramount. Turbidity is recognized as an effective tool for monitoring suspended sediments in aquatic systems, and with recent technological advances turbidity can be measured in-situ remotely, continuously, and at much finer temporal scales than was previously possible. Although turbidity provides an improved method for estimation of suspended-sediment concentration (SSC), compared to traditional discharge-based methods, there is still significant variability in turbidity-based SSC estimates and in sediment loadings calculated from those estimates. The purpose of this study was to improve the turbidity-based estimation of SSC. Working at two monitoring sites on the Roanoke River in southwestern Virginia, stage, turbidity, and other water-quality parameters and were monitored with in-situ instrumentation, suspended sediments were sampled manually during elevated turbidity events; those samples were analyzed for SSC and for physical properties; rainfall was quantified by geologic source area. The study identified physical properties of the suspended-sediment samples that contribute to SSC-estimation variance and hydrologic variables that contribute to variance in those physical properties. Results indicated that the inclusion of any of the measured physical properties, which included grain-size distributions, specific surface-area, and organic carbon, in turbidity-based SSC estimation models reduces unexplained variance. Further, the use of hydrologic variables, which were measured remotely and on the same temporal scale as turbidity, to represent these physical properties, resulted in a model which was equally as capable of predicting SSC. A square-root transformed turbidity-based SSC estimation model developed for the Roanoke River at Route 117 monitoring station, which included a water level variable, provided 63% less unexplained variance in SSC estimations and 50% narrower 95% prediction intervals for an annual loading estimate, when compared to a simple linear regression using a logarithmic transformation of the response and regressor (turbidity). Unexplained variance and prediction interval width were also reduced using this approach at a second monitoring site, Roanoke River at Thirteenth Street Bridge; the log-based transformation of SSC and regressors was found to be most appropriate at this monitoring station. Furthermore, this study demonstrated the potential for a single model, generated from a pooled set of data from the two monitoring sites, to estimate SSC with less variance than a model generated only from data collected at this single site. When applied at suitable locations, the use of this pooled model approach could provide many benefits to monitoring programs, such as developing SSC-estimation models for multiple sites which individually do not have enough data to generate a robust model or extending the model to monitoring sites between those for which the model was developed and significantly reducing sampling costs for intensive monitoring programs. / Master of Science

Sediment transport at the watershed scale in the Bluegrass Region of Kentucky is dominated by surface fine grained laminae, streambed, and streambank erosion; high instream sediment storage; and surface erosion processes. All these processes can be impacted by agricultural, urban, and suburban land-uses as well as hydrologic forcing. Understanding sediment transport processes at the watershed scale is a need for budgeting and controlling sediment pollution, and watershed modeling enables investigation of the cumulative effect of sediment processes and the parameters controlling these processes upon the entire sediment budget for a watershed. Sediment transport is being modeled by coupling the hydrologic model Hydrologic Simulations Program-FORTRAN (HSPF) with an in-house conceptually based hydraulic and sediment transport model. The total yield at the watershed outlet as well as the source fractions from surface fine grained lamina, streambed, and streambank sources; deposition; and biological generation within the streambed are predicted with the sediment transport model. Urbanization scenarios are then run on the calibrated model so as to predict the sediment budget for the South Elkhorn watershed for present and future conditions.

Reactive transport modeling is an important approach to understand water dynamics, mass transport and biogeochemical processes from the hillslope to the catchment scale. It has a wide range of applications in the fields of e.g. water resource management, contaminanted site remediation and geotechnical engineering. To simulate reactive transport processes at a hillslope or larger scales is a challenging task, which involves interactions of complex physical and biogeochemical processes, huge computational expenses as well as difficulties in numerical precision and stability. The primary goal of the work is to develop a practical, accurate and efficient tool to facilitate the simulation techniques for reactive transport problems towards hillslope or larger scales. The first part of the work deals with the simulation of water flow in saturated and unsaturated porous media. The capability and accuracy of different numerical approaches were analyzed and compared by using benchmark tests. The second part of the work introduces the coupling of the scientific software packages OpenGeoSys and IPhreeqc by using a character-string-based interface. The accuracy and computational efficiency of the coupled tool were discussed based on three benchmarks. It shows that OGS#IPhreeqc provides sufficient numerical accuracy to simulate reactive transport problems for both equilibrium and kinetic reactions in variably saturated porous media. The third part of the work describes the algorithm of a parallelization scheme using MPI (Message Passing Interface) grouping concept, which enables a flexible allocation of computational resources for calculating geochemical reaction and the physical processes such as groundwater flow and transport. The parallel performance of the approach was tested by three examples. It shows that the new approach has more advantages than the conventional ones for the calculation of geochemically-dominated problems, especially when only limited benefit can be obtained through parallelization for solving flow or solute transport. The comparison between the character-string-based and the file-based coupling shows, that the former approach produces less computational overhead in a distributed-memory system such as a computing cluster. The last part of the work shows the application of OGS#IPhreeqc for the simulation of the water dynamic and denitrification process in the groundwater aquifer of a study site in Northern Germany. It demonstrates that OGS#IPhreeqc is able to simulate heterogeneous reactive transport problems at a hillslope scale within an acceptable time span. The model results shows the importance of functional zones for natural attenuation process. / Modellierung des reaktiven Stofftranports ist ein wichtiger Ansatz um die Wasserströmung, den Stofftransport und die biogeochemischen Prozesse von der Hang- bis zur Einzugsgebietsskala zu verstehen. Es gibt umfangreiche Anwendungsgebiete, z.B. in der Wasserwirtschaft, Umweltsanierung und Geotechnik. Die Simulation der reaktiven Stofftransportprozesse auf der Hangskala oder auf größeren Maßstäbe ist eine anspruchsvolle Aufgabe, da es sich um die Wechselwirkungen komplexer physikalischer und biogeochemischen Prozesse handelt, die riesigen Berechnungsaufwand sowie numerischen Schwierigkeiten bezogen auf die Genauigkeit und die Stabilität nach sich ziehen. Das Hauptziel dieser Arbeit besteht darin, ein praktisches, genaues und effizientes Werkzeug zu entwickeln, um die Simulationstechnik für reaktiven Stofftransport auf der Hangskala und auf größeren Skalen zu verbessern. Der erste Teil der Arbeit behandelt die Simulation der Wasserströmung in gesättigten und ungesättigten porösen Medien. Das Anwendungspotential und die Genauigkeit verschiedener numerischer Ansätze wurden mittels einiger Benchmarks analysiert und miteinander verglichen. Der zweite Teil der Arbeit stellt die Kopplung der wissenschaftlichen Softwarepakete OpenGeoSys und IPhreeqc mit einer stringbasierten Schnittstelle dar. Die Genauigkeit und die Recheneffizienz des gekoppelten Tools OGS#IPhreeqc wurden basierend auf drei Benchmark-Tests diskutiert. Das Ergebnis zeigt, dass OGS#IPhreeqc die ausreichende numerische Genauigkeit für die Simulation reaktiven Stofftransports liefert, welcher sich sowohl auf die Gleichgewichtsreaktion als auch auf die kinetische Reaktion in variabel gesättigten porösen Medien beziehen. Der dritte Teil der Arbeit beschreibt zuerst den Algorithmus der Parallelisierung des OGS#IPhreeqc basierend auf dem MPI (Message Passing Interface) Gruppierungskonzept, welcher eine flexible Verteilung der Rechenressourcen für die Berechnung der geochemischen Reaktion und der physikalischen Prozesse wie z.B. Wasserströmung oder Stofftransport ermöglicht. Danach wurde die Leistungsfähigkeit des Algorithmus anhand von drei Beispielen getestet. Es zeigt sich, dass der neue Ansatz Vorteile gegenüber die konventionellen Ansätzen für die Berechnung von geochemisch dominierten Problemen bringt. Dies ist vor allem dann der Fall, wenn nur eingeschränkter Nutzen aus der Parallelisierung für die Berechnung der Wasserströmung oder des Stofftransportes gezogen werden kann. Der Vergleich zwischen der string- und der dateibasierten Kopplung zeigt, dass die erstere weniger Rechenoverhead in einem verteilten Rechnersystem, wie z.B. Cluster erzeugt. Der letzte Teil der Arbeit zeigt die Anwendung von OGS#IPhreeqc für die Simulation der Wasserdynamik und der Denitrifikation im Grundwasserleiter eines Untersuchungsgebietes in NordDeutschland. Es beweist, dass OGS#IPhreeqc in der Lage ist, reaktiven Stofftransport auf der Hangskala innerhalb akzeptabler Zeitspanne zu simulieren. Die Simulationsergebnisse zeigen die Bedeutung der funktionalen Zonen für die natürlichen Selbstreinigungsprozesse.

This dissertation presents a scientific framework that facilitates enhanced understanding of aerosol source - receptor (S/R) relationships and their impact on the local, regional and global air quality by employing a complementary suite of modeling methods. The receptor - oriented Positive Matrix Factorization (PMF) technique is combined with Potential Source Contribution Function (PSCF), a trajectory ensemble model, to characterize sources influencing the aerosols measured at Gosan, Korea during spring 2001. It is found that the episodic dust events originating from desert regions in East Asia (EA) that mix with pollution along the transit path, have a significant and pervasive impact on the air quality of Gosan. The intercontinental and hemispheric transport of aerosols is analyzed by a series of emission perturbation simulations with the Sulfur Transport and dEposition Model (STEM), a regional scale Chemical Transport Model (CTM), evaluated with observations from the 2008 NASA ARCTAS field campaign. This modeling study shows that pollution transport from regions outside North America (NA) contributed ∼ 30 and 20% to NA sulfate and BC surface concentration. This study also identifies aerosols transported from Europe, NA and EA regions as significant contributors to springtime Arctic sulfate and BC. Trajectory ensemble models are combined with source region tagged tracer model output to identify the source regions and possible instances of quasi-lagrangian sampled air masses during the 2006 NASA INTEX-B field campaign. The impact of specific emission sectors from Asia during the INTEX-B period is studied with the STEM model, identifying residential sector as potential target for emission reduction to combat global warming. The output from the STEM model constrained with satellite derived aerosol optical depth and ground based measurements of single scattering albedo via an optimal interpolation assimilation scheme is combined with the PMF technique to characterize the seasonality and regional distribution of aerosols in Asia. This innovative analysis framework that combines the output from source - oriented chemical transport models with receptor models is shown to reduce the uncertainty in aerosol distributions, which in turn leads to better estimates of source - receptor relationships and impact assessments of aerosol radiative forcing and health effects due to air pollution.

The intra-continental movement of waterborne contaminants is governed by the distribution of solute load in the landscape along with the characteristics and distribution of the hydrological pathways that transport the solutes. An understanding of the processes affecting the transport and fate of the contaminants is crucial for assessments of solute concentrations and their environmental effect on downstream recipients. Elevated concentration of nutrients and the presence of anthropogenic substances, such as pharmaceutical residues, are two examples of the current problems related to hydrological transport. The overall objective of this thesis is to increase the mechanistic understanding of the governing hydrological transport processes and their links to geomorphological and biogeochemical retention and attenuation processes. Specifically, this study aims to quantify the processes governing the transport and fate of waterborne contaminants on the point, stream reach, and watershed scales by evaluating time series obtained from stream tracer tests and water quality monitoring data. The process quantification was achieved by deriving formal expressions for the key transport characteristics, such as the central temporal moments of a unit solute response function and the spectral scaling function for time series of solute responses, which attributes the solute response in the Laplace and Fourier domains to the governing processes and spatial regions within the watershed. The results demonstrate that in addition to the hydrological and biogeochemical processes, the distribution of the load in the landscape and the geomorphological properties in terms of the distribution of transport pathway distances have defined effects on the solute response. Furthermore, the spatial variability between and along the transport pathways significantly affect the solute response. The results indicate that environments with high retention and attenuation intensity, such as stream-reaches with pronounced hyporheic zones, may often dominate the solute flux in the watershed effluent, especially for reactive solutes. The mechanistic-based framework along with the evaluation methodologies presented within this study describes how the results can be generalized in terms of model parameters that reflect the hydrology, geomorphology and biogeochemistry in the studied area. This procedure is demonstrated by the parameterization of a compartment-in-series model for phosphorous transport. / <p>QC 20140826</p>

Mature karst topography is well recognized within the hydrology and geology communities to include subterranean fluid pathways that act as turbulent conduits conveying fluid from surface stream sinks called swallets to sources called springs. However, we find that little knowledge has been reported with regards to the transport and fate of terrestrially-derived sediment organic carbon (SOC) within karst watersheds. This study investigated the hypothesis that karst pathways could act as biologically active conveyors of SOC that temporarily store sediment, turnover carbon at higher rates than otherwise considered, and recharge depleted SOC back to the surface stream within the fluvial system. Mixed research methods were applied within a mature karst network. Methods included high resolution measurements of water and sediment characteristics of surface streams, carbon and stable carbon isotope measurements of transported sediment, and numerical modeling of water and sediment pathways. The mixing of sediment during net zero deposition and erosion was investigated in this study using a parameter calibrated to SOC data. Results of this study showed that heterotrophic bacteria in the subsurface conduit oxidized 0.05 tCkm-2y-1 resulting from the temporary storage of terrestrial carbon in the karst conduit. The subsurface conduit transports 0.15 tCkm-2y-1 out of the fluviokarst watershed.

Small lowland agricultural systems promote conditions where benthic biological communities can thrive. These biogeochemical processes have significant impacts on terrestrial ecosystem processes including POC flux and fate, nutrient balances, water quality budges, and aquatic biological functioning. Limited information is available on coupled biological and hydrologic processes in fluvial systems. This study investigates the mixture of biological and hydrologic processes in the benthic layer in order to understand POC cycling in the South Elkhorn system. Further, comprehensive modeling of POC flux in lowland systems has not been performed previously and the behavior of potentially controlling variables, such as hydrologic forcing and seasonal temperature regimes, is not well understood. Conceptual hydraulic and sediment transport models were simulated for the South Elkhorn. Based on data and model results it was concluded that during a hydrologic event, upland and bank sources produce high variability of POC sources. Likewise, over time, the density of hydrologic events influenced accrual of benthic algal biomass in the POC pool. Environmental variables such as temperature and light availability drove seasonal variations of POC in the streambed. Based on model estimates, around 0.29 metric tCkm-2yr-1 of POC is flushed from the system annually with 13 % coming from autochthonous algae.

There are only a few detailed measurements of the cross-shore variation in the net sediment transport and beach evolution for single or multiple swash events, and no data showing the influence of long waves and wave groups on swash zone morphology. Novel laboratory experiments and numerical modeling have been performed to study the influence of long waves and bichromatic wave groups on sediment transport and beach morphodynamics in the swash zone. Due to complex processes, difficulties in measuring, and very significant difficulties in isolating the morphodynamic processes induced by long waves and wave groups on natural beaches, a laboratory study was designed to measure in very high detail the bathymetric evolution of model sand beaches under monochromatic waves, long wave and short wave composites (free long waves), and bichromatic wave groups (forced long waves). Net sediment transport, Q(x), and beach morphology changes under the monochromatic waves were analyzed and compared to conditions with and without the free long waves, and then compared with the bichromatic wave groups. A range of wave conditions, e.g., high energy, moderate energy, and low energy waves, were used to obtain beach evolution ranging from accretionary to erosive, and including intermediate beach states. Hydrodynamics parameters, e.g., instantaneous water depths, wave amplitudes, run-up and rundown, were also measured to study and test a sediment transport model for the swash zone, based on modifying the energetic-bedload based sediment transport equations with suspended sediment. The experimental data clearly demonstrate that for the monochromatic wave conditions, beach evolution develops erosion for high steepness waves and accretion for lower steepness waves. The model beach profile evolutions are similar to natural beaches, and form and develop bars and berms over time. Adding a free long wave to the short wave in the composite wave results in changes to the overall trend of erosion/accretion of the beach profile, but the net transport pattern does not change significantly. The short wave strongly dominates beach behavior and the net transport rate, instead of the free long wave in the composite wave. The free long wave, however, carries more water and sediment onshore, leading to an increase in shoreline motion and wave run-up further landward. The long wave influences the structure and position of the swash bar/berm, which generally tends to move onshore and forms a larger swash bar/berm for higher long wave amplitudes. The free long wave also increases overall onshore sediment transport, and reduces offshore transport for erosive conditions. The long wave tends to protect the beach face and enhances onshore transport for accretive conditions, especially in the swash zone. In contrast, for bichromatic wave groups having the same mean energy flux as their corresponding monochromatic wave, the influence on sediment transports is generally offshore in both the surf and swash zone instead of onshore. The swash berm is, however, formed further landward compared with the berm of the corresponding monochromatic wave. The sediment transport patterns (erosion or accretion) generated by the bichromatic wave group or corresponding monochromatic wave are similar, but differ in magnitude. The numerical model, starting in the inner surf zone to reduce the effect of poor breaker description in the non-linear shallow water equations, can produce a good match between observed data and the modeled hydrodynamics parameters in the SZ. The sediment transport model shows the important role of suspended sediment in the swash zone. In contrast with the observed data, energetic-based bed-load models predict offshore sediment transport for most wave conditions because of negative skewness. The modified sediment transport model, with added suspended sediment terms and optimized coefficients, produces a good match between model results and observed data for each wave condition, especially for low frequency monochromatic waves. The optimized coefficient set corresponding to particular monochromatic wave conditions can be used to predict the net sediment transport quite well for some composite wave conditions. Overall, the same optimized coefficient sets can be applied to predict the correct overall trend of net transport for most composite wave conditions. However, the predicted net transport for the bichromatic wave groups does not match well with the overall net transport patterns. There is no set of single transport coefficients that can be used to predict sediment transport for all wave conditions. This suggests that the present sediment transport models cannot predict evolution correctly, even for conditions which represent only perturbation from those for which they were calibrated.