Zooplankton samples and water mass measurements were conducted along a 10 km long, east-west transect off the coast of southeast Florida during 2007. Temperature and salinity measurements were recorded using a conductivity-temperature-depth (CTD) sensor, and current direction and magnitude measurements were recorded using an acoustic Doppler current profiler (ADCP). Daylight zooplankton samples were collected using a 335 μm mesh bongo net at surface 0-25 m and 0-150 m (nearshore) and 0-200 m (offshore), at three stations, for 5 nonconsecutive months along the transect. Chaetognatha were separated from bulk zooplankton samples and identified to species; fifteen different species were found. Flaccisagitta enflata had the highest densities over the entire sampling period, followed by Serratosagitta serratodentata, and Krohnitta pacifica. ADCP data revealed the existence of a Subsurface Counter Current in conjunction with an offshore meander of the Florida Current during May, July, and September 2007. Abiotic data confirmed the presence of Continental Edge Water and Yucatan Water occupying different spatial and temporal scales, and the boundary between these two water masses existed as the western boundary of the Florida Current. The densities of each species were compared to the collection site’s temperature and salinity data. Densities of several species (Flaccisagitta enflata, Ferosagitta hispida, M. minima, and Sagitta bipuctata) demonstrated a correlation to temperature and S. bipunctata and Ferosagitta hispida showed a correlation to salinity. These species were associated with the front and peripheries of the Florida Current.

Diel vertical migrations (DVM) comprise the largest animal migration on the planet and are a phenomenon present in all bodies of water on Earth. A strong sound scattering layer undergoing DVM was observed in the Straits of Florida via a bottom-mounted Acoustic Doppler current profiler (ADCP) Workhorse Longranger 75 kHz (Teledyne RD Instruments) located at the 244 m isobath. ADCP average backscatter showed a clear periodicity corresponding with sunrise and sunset times indicating the presence of a nocturnal DVM. Analysis of the ADCP backscatter data indicated zooplankton swimming velocities were faster during sunrise than sunset times. In several cases the zooplankton swimming velocity appeared to be faster at the beginning of the descent, after which the swimming velocity decreased. Analysis of ADCP velocity data indicated a measureable decrease in the northward component of the current velocity field during migrations (sunrise and sunset) compared to three hours prior. This was presumably associated with an increase in drag due to turbulent friction associated with DVM. A non-hydrostatic computational fluid dynamics (CFD) model with injection of Lagrangian particles was utilized to simulate the effects of DVM on the velocity field and turbulence signature of the Florida Current. A domain simulating a section of the Florida Current was created and zooplankton were represented by particle injection with a discrete phase model. The model was run with and without particles, holding all other parameters the same, for comparison. Idealized temperature stratification and velocity profiles were set for both summer and winter conditions to observe seasonal differences. For each case, velocity and turbulence with particles were compared to results without particles to confirm the changes in profiles were due to the zooplankton (Lagrangian particles). In several cases there was an observable change in average x-velocity profiles due to the injection of particles into the domain. In all cases there was an observable increase in subgrid turbulent viscosity in the wake of the injected particles. This effect was much stronger in the winter case, most likely due to stratification of the water column which gave a near critical Richardson number. These results indicated that DVM does in fact have an effect on the velocity profile and turbulence signature in a strong current under certain conditions and that there was a seasonal difference due to stratification profiles.

Two differently structured food webs can be distinguished in the pelagic habitat of aquatic systems; the classical one (autotrophic) with phytoplankton as a base and the microbial food web (heterotrophic) with bacteria as a base. Energy (produced at the basal trophic level) reaches higher trophic levels, i.e. zooplankton, directly in the classical food web in contrast to the microbial food web where it passes through additional trophic levels before reaching zooplankton. Energy is lost between each trophic level and therefore less energy should reach higher trophic levels in the microbial food web than in the classical food web. However, factors such as edibility of prey, temperature and properties of the predator, might also influence the food web structures and functions. In this thesis I studied which factors are important for an efficient carbon transfer and how a potential climate change might alter the food web efficiency in pelagic and pelagic-benthic food webs in the Baltic Sea. Furthermore, one of the most dominant zooplankton in the northern Baltic Sea, Limnocalanus macrurus, was studied in order to establish the seasonal pattern of lipid reserves in relation to food consumption. My studies showed that the carbon transfer efficiency during summer was not directly connected to the basal production, but factors such as the ratio between heterotrophs and autotrophs, the relationship between cladocerans and calanoid copepods and the size and community structure of both phytoplankton and zooplankton were important for the carbon transfer efficiency. In a climate change perspective, the temperature as well as the relative importance of the microbial food web is likely to increase. A temperature increase may have a positive effect on the pelagic food web efficiency, whereas increasing heterotrophy will have a negative effect on the pelagic and pelagic-benthic food web efficiency, reduce the fatty acid content of zooplankton and reduce the individual weight of both zooplankton and the benthic amphipod Monoporeia affinis. During the seasonal study on the calanoid copepod L. macrurus, I found that this species is mainly a carnivore, feeding on mesozooplankton during most of the year but switches to feeding on phytoplankton when these are abundant. Furthermore, when food is scarce, it utilizes lipids that are built up during the course of the year. From these studies I can draw some major conclusions; there are many factors that influence how efficient carbon is transferred in the food web and different factors are probably of various importance in different areas. In order to determine the carbon transfer efficiency, the various strategies exerted by different organism groups have to be considered, as for example that some zooplankton utilize lipid reserves instead of feeding all year around. Also, in a climate change perspective, the pelagic-benthic food web efficiency will decrease, as will the quality of zooplankton and M. affinis, possibly having implications for higher trophic levels such as fish.

M.Sc. (Zoology) / Please refer to full text to view abstract

Doctor Educationis / Analysis of temperature, rainfall and evaporation records over a 44-year period spanning the years 1964 to 2008 indicates changes in the climate around Lake Kariba. Mean annual temperatures have increased by approximately 1.5oC, and pan evaporation rates by about 25%, with rainfall having declined by an average of 27.1 mm since 1964 at an average rate of 6.3 mm per decade. At the same time, lake water temperatures, evaporation rates, and water loss from the lake have increased, which have adversely affected lake water levels, nutrient and thermal dynamics. The most prominent influence of the changing climate on Lake Kariba has been a reduction in the lake water levels, averaging 9.5 m over the past two decades. These are associated with increased warming, reduced rainfall and diminished water and therefore nutrient inflow into the lake. The warmer climate has increased temperatures in the upper layers of lake water, the epilimnion, by an overall average of 1.9°C between 1965 and 2009. The warmer epilimnion has led to a more stable thermocline in the lake, and its upward migration from a previously reported 20 m depth to the current 2 to 5 m depth reported in the lake’s Sanyati Basin. A consequence of the more stable thermocline has been the trapping of greater amounts of nutrients in the deep, cold bottom waters of the lake, the hypolimnion, and this coupled with a shorter mixing (turnover) period is leading to reduced nutrient availability within the epilimnion. This is evident from a measured 50% reduction in nitrogen levels within the epilimnion, with phosphorus levels displaying a much smaller net decline due to localised sources of pollution inflows into the lake. These changes in lake thermal dynamics and density stratification have reduced the volume of the lake epilimnion by ~50%, which includes the well mixed, oxygenated euphotic zone leading to more acidic waters (lower pH) and increased water ionic concentrations (conductivity), and decreased dissolved oxygen levels, which have resulted in a 95% reduction in phytoplankton biomass and a 57% decline in primary production rates since the 1980s. The reduced nitrogen levels especially have contributed to a proliferation of nitrogen-fixing Cyanophyceae, the dominant Cylindrospermopsis raciborskii comprising up to 66% of the total phytoplankton biomass and 45.6% of the measured total phytoplankton cellular concentrations. Also, shifts in seasonal dominance of different phytoplankton groups have been observed in the lake during turnover, the Cyanophyceae having increased in dominance from 60% of the total phytoplankton biomass in the early 1980’s to the current 75%. In contrast, the Bacillariophyceae have declined substantially, from 18% of the total phytoplankton biomass in the early 1980’s to the current 1.7%. The diminished phytoplankton biomass of more palatable phytoplankton, and the proliferation of smaller, less palatable phytoplankton taxa, has resulted in reduced zooplankton biomass and species richness and altered zooplankton species composition. Concentrations of large Cladocera and Copepoda especially have declined substantially in the lake by up to 93.3% since the mid 1970s, with small Rotifera currently comprising 64% of the total zooplankton biomass. The reductions in zooplankton biomass correspond with recorded decreases in catches per unit effort for the sardine Limnothrissa miodon (Kapenta), which have been steadily declining in the lake since 1986.

As part of a long-term monitoring programme initiated by the South African Environmental Observation Network (SAEON) Elwandle Node, the spatio-temporal dynamics of mesozooplankton (200–2000 μm) community structure in Algoa Bay, on the Eastern Cape coastline of southern Africa, was investigated in summer and winter of 2008. Physical-chemical and biological variables were measured at selected sites in the eastern and western sectors of the Bay. During summer, nutrient rich waters upwelling into the eastern sector of the Bay contributed to significant spatial variation in selected physical-chemical variables. During winter, virtually no significant spatial patterns in the physical-chemical variables were observed (P>0.05 in all cases). For the majority of physical-chemical variables, no significant seasonal patterns in values were detected (P>0.05 in all cases). Notable exceptions were water column stability and water temperatures which were highest during summer, and seston, turbidity and ammonium concentrations which attained the highest values in winter. The striking seasonal pattern observed in the water column stability, coupled with the upwelling event, coincided with a strong seasonal pattern in the total surface and integrated chlorophyll-a concentrations within the Bay. During summer, the total surface phytoplankton biomass ranged from 1.87–3.11 μg.L⁻¹ and the integrated biomass values between 44.6 and 89.1 mg chl-a m⁻². In winter, surface chl-a concentrations ranged from 0.49 to 0.55 μg.L⁻¹ and integrated biomass from 13.5 to 13.8 mg chl-a m⁻². During both seasons, the large microphytoplankton (>20 μm) fraction contributed the most (>80%) to the total phytoplankton biomass suggesting that phytoplankton growth is not nutrient limited within the Bay. The total mesozooplankton abundance and biomass values during summer varied between 10088.92 and 28283.21 ind.m⁻³ and between 76.59 and 161.94 mg.m⁻³, respectively. During winter, total abundance and biomass of mesozooplankton within the Bay were significantly lower, ranging from 2392.49 to 11145.29 ind.m⁻³, and from 34.49 to 42.49 mg.m⁻³, respectively (P<0.05). During both seasons, cosmopolitan copepod species 200–500μm in size dominated the total mesozooplankton counts, numerically and in biomass. Hierarchical cluster analyses identified distinct zooplankton groupings within the Bay during both the summer (three groupings) and winter (four groupings) surveys. The different groupings identified during the two seasons were not associated with any specific geographic region or hydrological feature. Nonetheless, a distinct seasonal pattern in the mesozooplankton community was evident, largely reflecting the increased abundance of mesozooplankton during the summer survey. Canonical Correspondence Analyses (CCA) indicated that the zooplankton community structure within Algoa Bay reflected a complex interaction between physical-chemical (e.g. temperature, water column stability, turbidity, and nitrate, dissolved oxygen and nitrite concentrations) and biological factors (e.g. microphytoplankton and picophytoplankton concentrations). These data provide baseline information towards long-term monitoring programs that will be conducted in Algoa Bay, as part of the South African Environmental Observation Network (SAEON), in the near future.

This project had three main aims. The first aim was to investigate the metabolic physiology of the mysid Mesopodopsis wooldridgei. Secondly, the study examined the contribution of the mysid to the zooplankton community. Finally the study attempted to clarify the primary sources of carbon utilised by the mysid using stable carbon isotope analysis. The study was conducted in the freshwater dominated permanently open Great Fish Estuary (33°30’S; 27°08’E) located along the south-eastern coastline of southern Africa. Mass specific oxygen consumption rates of Mesopodopsis wooldridgei ranged between 0.11 and 8.38 ml O2 mg ww-1 h-1 and increased with an increase in water temperature. There were no significant differences in the respiration rates between the male and female mysids (P > 0.05). At a constant temperature (20°C), the oxygen consumption rate of M. wooldridgei decreased with an increase in salinity. Salinity tolerance of the mysid was strongly modified by temperature. At 5‰ and 30°C, mysids exhibited mass mortality. The Q10 value for M. wooldridgei at 15, 25 and 35‰ was estimated at 2.34, 1.44 and 2.14, respectively. Results of the study suggest that M. wooldridgei is well adapted to surviving in environments characterised by variations in temperature and salinity. Within the Great Fish Estuary, total chl. a concentration ranged between 2.68 μg L-1 and 31.12 μg L-1 and was always dominated by large phytoplankton cells (>5 μm). Average zooplankton abundance ranged between 62 and 28 917 ind. m-3 and biomass between 10 and 203 mg Dwt m-3. The zooplankton community was numerically dominated by the calanoid copepod Pseudodiaptomus hessei, which comprised up to 100% (range between 12 and 100%) of the total zooplankton counted. Total zooplankton biomass during the day was dominated by copepods and by mysids during the nighttime. Among the mysids, M. wooldridgei was the most numerically abundant mysid and comprised <10% of the total zooplankton abundance. Numerical analysis found no seasonal pattern in the total zooplankton abundance (including mysids). The lack of any seasonality could be attributed to the continuous freshwater inflow into the estuary due to the inter-basin transfer of water from the Gariep Dam to the Fish River system. A distinct spatial pattern in the zooplankton community structure was evident with the upper stations almost entirely dominated by the copepod P. hessei, while at stations occupied in the lower reaches of the estuary, the zooplankton community comprised a mixture of freshwater, estuarine and marine breeding zooplankton species. The mysids also demonstrated a distinct spatial pattern in their distribution. Mysids were generally absent from the upper reaches, while in the middle reaches Rhopalophthalmus terranatalis and M. wooldridgei were numerically dominant. Gastrosaccus brevifissura dominated in the lower regions of the estuary. Stable isotope analysis (δ13C) indicated that the dominant source of carbon utilised by the numerically dominant copepods and juvenile M. wooldridgei within the estuary was derived from the extensive phytoplankton stocks within the system. In contrast, sub-adult and adult mysids (R. terranatalis, M. wooldridgei and G. brevifissura) appeared to consume a combination of phytoplankton and copepods. The contribution of the various sources of carbon to the total carbon intake of the mysid remains unknown.

This thesis presents the first intensive community-level investigation of the mesozooplankton from a biogeographical transition zone estuary. The Mgazana Estuary is located along a rural, semi-undeveloped part of South Africa’s east coast, believed to represent a transition zone between the subtropical and warm-temperate biogeographical zones. The research represented in this thesis involves data collected over a five year period between 2002 and 2006, with additional data collection made in 2008. The study focussed on five areas of investigation, the first of which investigated the physico-chemical dynamics of the Mgazana Estuary. The Mgazana Estuary exhibited marked vertical, horizontal and regional structures in the hydrological environment. Prominent vertical and horizontal stratification characterised summer months. A substantial turbidity front was observed in the lower estuary during summer and winter. The upper estuary was marked by considerable variation in multiple variables but especially salinity. These structures appeared to have shifted in position over the horizontal plane, which was attributed to variation in freshwater flow. The second study focused on the spatial dynamics of mesozooplankton in the Mgazana Estuary. The zooplankton was rich and in terms of composition typical of mangrove systems. The Copepoda were dominant, numerically and in terms of taxonomic representation. Calanoids Acartiella natalensis and Pseudodiaptomus hessei characterised middle and upper reaches in summer and mostly upper reaches in winter. On community level, a highly structured assemblage arrangement was observed during summer and winter months. These trends were further scrutinised under the theoretical framework of ecological boundaries. In so doing, an agreeable spatial association emerged between specific assemblages and their environments. These trends were concluded to reflect ecoclinal as well as ecotonal properties, the latter describing interactions over narrow spatial bands of marked changes in turbidity. The third study investigated flooding events as short-lived extreme meteorological events and the influence on zooplankton. Within this regard, second-stage multivariate statistics was used to assess year-to-year variability in assemblage structures on whole-system and regional scales. The impact of two major flooding events that flushed the estuary some days prior to sampling could clearly be elucidated. Flooding emerged as a significant source of inter-annual variability in the zooplankton of the Mgazana Estuary. Second-stage multivariate analysis proved to be an effective analytical strategy for investigating inter-annual variability in species assemblage structures. Results from the preceding study prompted a detailed investigation into the spatio-temporal dynamics of Acartiella natalensis, the most important zooplankton species of the system aimed at elucidating flood responses. Acartiella natalensis showed indication of temporal arrest in association with flooding events in a similar fashion as is observed in seasonal variation trends in estuaries towards its geographical distribution limit south of the study area. It was concluded that A. natalensis was severely affected by floods and the possibility exist for entrainment of entire populations from the estuary during flooding events. The final study tested the hypothesis of post-flood propagation from a resting egg bank in the sediments of the Mgazana Estuary. Preliminary data revealed that numerous eggs were present in the sediments. Nauplii hatched from eggs under laboratory conditions were identified as belonging to the family Acartiidae. The preliminary mode of diapause is presented as a schematic model, emphasising the role of freshwater flow and specific environmental variables. This was the first discovery of resting eggs from a subtropical estuary from South Africa. It is hoped that the findings of this study would give rise to new research initiatives investigating the importance of resting stages in estuarine and coastal Copepoda species and the role such reproductive strategies may play in estuarine functioning.

La compréhension des mécanismes de bioaccumulation des contaminants organiques persistants (POP) dans les réseaux trophiques marins est un enjeu majeur pour l'évaluation des risques environnementaux liés aux pressions anthropiques, notamment en zone côtière. Le plancton joue un rôle pivot dans le devenir des PCB dans l'environnement marin, notamment sur la base des observations de fortes concentrations de ces contaminants chez les zooplanctonophages. Les processus d'accumulation de ces contaminants au sein du plancton restent mal connus. Dans le cadre du projet COSTAS, les teneurs en PCB dans trois classes de tailles de plancton ont été étudiées en baie de Marseille entre sept. 2010 et oct. 2011. Les concentrations étaient fortes en comparaison à d'autres mesures réalisées dans le golfe du Lion. Du fait des apports variables en PCB, aucun «effet de dilution par la biomasse» n'a pu être détecté. Le niveau de contamination est fortement corrélé aux conditions météorologiques qui augmentent les concentrations en PCB dans l'eau. Le passé récent des organismes planctoniques, caractérisable par leur taille ou leur teneur en lipides, ne montre pas d'influence sur les teneurs observées. Le rapport C/N met en évidence l'importance de la contribution des détritus dans les niveaux de contaminations des différentes classes de taille. Une bioamplification modérée mais significative avec la position trophique est mise en évidence par les signatures de δ15N. La relation linéaire entre les BAF et log Kow indiquerait que le partage à l'équilibre avec la phase aqueuse suffit à contrôler les niveaux de PCB dans le plancton. / The understanding of bioaccumulation mechanisms of persistent organic pollutants (POP) in marine trophic networks is a major issue for scaling environmental risks linked to anthropogenic pressure, particularly in coastal areas. The plankton is assumed to play a pivotal role in the fate of PCBs in marine environment, as highlighted by the high concentrations found in planktivorous predators. However the accumulation processes of these contaminants in plankton are still poorly documented. The COSTAS project aimed at improving our knowledge on this issue. PCB levels in three plankton size-classes were studied in the bay of Marseilles (N-W Mediterranean Sea), between September 2010 and Octobre 2011. Measured PCB concentrations in Marseille bay plankton were high in comparison to those measured in other areas of the Gulf of Lion. No "dilution effect" was detected, due to the high variability in PCB inputs in the bay.receive, . The level of contamination in plankton appeared directly linked to weather conditions which increase the PCB concentration either through continental inputs or by sediment re-suspension events and hydrodynamic transport. The recent history of plankton organisms, derived from their size or their lipid content, had no influence on their PCB concentrations. The C/N ratio highlights the contribution of detritus in driving the contamination levels measured in the various size-classes. A moderate but significant bioamplification through planktonic trophic levels was highlighted using δ 15N signatures. The linear relationship between BAF and log Kow would indicate that the equilibrium with water phase is sufficient to control the PCB levels in the plankton.

Effects of log storage on water quality, zooplankton and juvenile salmonids were investigated at Babine Lake, British Columbia in a series of enclosure, field and laboratory experiments. Enclosures were stocked with lake zooplankton and treated with lodgepole pine (Pinus Contorta) and white spruce (Picea glauca) logs for two 25 day periods. Oxygen depletion, to levels as low as 2.5 mg/l, and increased lignin and tannin (L-T) concentration (a measure of wood leachate) occurred in log treated enclosures. Zooplankton density significantly decreased with increased log number, but changes in community diversity were not consistent. In field studies at Morrison Arm, Babine Lake, extreme oxygen depletion (<1 mg/l) was observed in localized surface waters within a log storage area. Dye tracer studies within the log bundles implied reduced water movement, which may be involved in oxygen depletion. Local zooplankton abundance was usually lower at log storage sites than nearby undisturbed littoral sites and sockeye fry held in situ for 24 h periods acquired fewer and/or a lower diversity of prey items in log storage areas. Laboratory toxicity studies indicated that spruce bark leachates were more toxic than pine, but lethally toxic bark leachates had higher L-T values than those measured in the Morrison Arm log storage area. In chronic Daphnia bioassays, mortality rates significantly increased and fecundity rates significantly decreased during long term exposure to low concentrations of bark leachates. Results of enclosure experiments, field studies and laboratory bioassays provide evidence that zooplankton are reduced in abundance by conditions which accompany log storage, possibly through chronic toxicity or reduce fecundity. Because fry diet was sensitive to small changes in food abundance, there is potential for reduced survival of sockeye fry exposed to low oxygen concentrations and reduced food levels. / Science, Faculty of / Zoology, Department of / Graduate