[pt] O petróleo é uma mistura complexa de diversos compostos, sendo os hidrocarbonetos seus principais constituintes, chegando a atingir 98% da composição total. Entre os hidrocarbonetos, os hidrocarbonetos policíclicos aromáticos (HPA) destacam-se por serem, em geral, resistentes à biodegradação e persistentes no ambiente, sendo potencialmente carcinogênicos ao homem e aos organismos. A presença destes compostos nos ecossistemas, de origem natural ou proveniente de fontes antropogênicas, e seus efeitos podem ser monitorados utilizando organismos do próprio ambiente. Nos ecossistemas aquáticos, a determinação de metabólitos de HPA na bílis de peixes que habitam o ambiente pode ser usada como indicadora de exposição ambiental recente. Assim, o desenvolvimento e a validação de métodos usualmente empregados na determinação de metabólitos de HPA em bílis de peixes têm contribuição e aplicação na elaboração de diagnósticos ambientais sobre a contaminação por petróleo e derivados nos sistemas aquáticos. Este trabalho otimizou, validou e comparou dois métodos para a determinação de 1- hidroxipireno em bílis de peixes. Um método usando a cromatografia a liquido de alta eficiência com detector de fluorescência (HPLC-F) e o outro usando a espectroscopia de fluorescência convencional. Os métodos foram validados com base nos parâmetros linearidade, sensibilidade, limite de detecção, limite de quantificação, repetitividade, reprodutibilidade e incluindo os cálculos das incertezas associadas. Nos dois casos, as fontes de contribuição mais significativas para a incerteza dos métodos foram as soluções-padrão. A incerteza padrão combinada associada ao método utilizando a cromatografia a líquido foi menor que a associada ao método utilizando fluorescência molecular. Entretanto, o método em fluorescência, apesar de ser semi-quantitativo e de apresentar incerteza maior, tem tempo de análise e custos de operação e manutenção menores, sendo indicado para análises preliminares. / [en] Petroleum is a complex mixture of several compounds. Among its principal components there are hydrocarbons which account to up to 98% of the total composition. Among the hydrocarbons, there are polycyclic aromatic hydrocarbons (PAH), which are more resistant to biodegradation, quite persistent in the environment and potentially carcinogenic to humans and marine organisms. The presence of these compounds on ecosystems, from natural origin or from anthropogenic sources, and their efluorescênciaects, can be monitored using living organisms of the environment. In aquatic ecosystems, the determination of PAH metabolites, in fish bile from the environment can be used as an indicator of recent environmental exposure. Thus, the development and validation of methods usually employed in the determination of PAH metabolites in the bile of fish have assistance in the preparation and implementation of diagnoses on the environmental contamination by petroleum and derivatives in aquatic systems. In this work two methods for the determination of 1- hydroxypyrene in fish bile were improved, validated and compared. A method using the high liquid chromatography with fluorescence detector (HPLC-F) and the other using fixed fluorescence spectroscopy. The methods were validated based on parameters linearity, sensitivity, limit of detection, limit of quantification, repeatability, reproducibility. In addition, calculations of the uncertainties associated to the 1-hydroxypyrene measurement were made. In both cases, the sources of most significant contribution to the methods uncertainty were the standard solutions. The combined standard uncertainty associated with the method using the liquid chromatography was lower than that associated with the method using molecular fluorescence. The fluorimetric method can be used as a semi-quantitative tool and presented greater uncertainty. However, this method has lower analysis time and costs of operation and maintenance, being quite suitable for preliminary analysis.

Human activities over the years, especially the unconventional exploitation of oil sands deposits, downstream on the Athabasca River (AR), might have affected the water quality and ecological integrity of the river basin, thereby presenting a threat to the environment and human health. There have been concerns that the oil sands process-affected waters stored in tailing ponds may be percolating to surface waters as well as underground waters, contaminating neighboring watersheds with a cocktail of chemicals including Polycyclic aromatic hydrocarbons (PAHs). PAHs are present both naturally and from human activities as pollutants in the environment. Forest fires, geologic activities, and oil seeps are examples of natural sources of PAHs in the environment. The major sources of PAHs in the Athabasca region are leaching of oil sands deposits and contamination from oil sands production. On occasions, forest fires contribute PAHs in the area. There has been no comparative data on the exposure of PAHs to fish along the AR and Slave River. I used an integrative monitoring of selected fishes as an indicator to achieve four objectives: i) describe the spatial and seasonal distribution of measurable concentrations of products of biotransformation of polycyclic aromatic hydrocarbons (PBPAH) in bile of fish; ii) determine the levels of parent PAHs in the muscle of fish, and extrapolate the data to estimate potential risk to human consumers, and to identify which species and geographic regions, if any, pose the greatest risk to humans; iii) use patterns of contamination to provide a scientific basis for elucidating the source of contamination; and iv) perform fish health investigation by collecting morphometric health measures and perform a systematic assessment of the occurrence of lesions in the fishes. I sampled whitefish (Coregonus clupeaformis), jackfish/northern pike (Esox luscius), walleye (Sander vitreus), goldeye (Hiodon alosoides) and burbot (Lota lota) from Fort McMurray, Fort McKay, and Fort Chipewyan in Alberta, and from Fort Smith and Fort Resolution on the Slave River in the Northwest Territories. The rationale for selecting fishes included: their abundance along the basin (some have short ranges, e.g., northern pike); their dietary/nutritional and cultural significance to communities in the area; their feeding strategy, such as benthic, supra-benthic, or pelagic, trophic status, and patterns of migration and habits of spawning. I addressed the first objective in Chapter 2, where the total PBPAHs were determined. Concentrations of products of biotransformation of 2 and 3-ringed, 4-ringed, and 5-ringed PAHs were measured using synchronous fluorescence spectroscopy. Spatial and seasonal differences were observed with greater concentrations of PBPAHs in samples of bile of fish collected from Fort McKay as well as greater concentrations of PBPAHs in bile of fish collected during summer compared to those collected in other seasons. Overall, PBPAHs were greater in fishes of lower trophic levels and fishes more closely associated with sediments. In particular, goldeye (Hiodon alosoides), consistently contained greater concentrations of all the PBPAHs studied. In Chapter 3, I achieved the second objective by measuring levels of parent PAHs in muscle of selected fishes and extrapolated the results to determine potential human health risks due to fish consumption. Dorsal muscle of fishes from upstream reaches of the AR close to oil sands extraction and upgrading activities, contained greater concentrations of individual PAHs than concentrations in muscle of fishes from further downstream in the Slave River. Risks posed by PAHs to humans were assessed using a B[a]P equivalents approach. According to the risk assessment results, the average lifetime risk of additional cancers for humans who consumed fish was less than 10-6. In Chapter 4, alkylated PAHs were also measured in fish muscle to achieve the third objective. The general presence of naphthalenes and phenanthrenes and the evaluation of molecular ratios (i.e., LMW/HMW alkyl-PAHs) allowed me to conclude that the major source of pollution is petrogenic, probably due to increases in oil sand activities around Fort McMurray and Fort McKay. I achieved the fourth objective in Chapter 5 by studying the health status and potential effects of industrial development on individuals of economically and culturally significant fishes. A resurgence in condition factor of all species after a low in 2011 was observed. Annual variation was also observed in condition factor and the incidence of anomalies or lesions. Morphometric data demonstrated relatively consistent health among fishes in both the Athabasca and Slave rivers. Analysis of condition factor and somatic indices did not demonstrate consistent differences along the river system. Overall, the health of fish as determined by the metrics employed in this study, does not appear to be adversely affected by the current level of development in the Alberta oil sands region. The data presented in this dissertation make invaluable contribution to the much needed monitoring program in the Athabasca and Slave Rivers. Overall, my findings provide baseline data on fish health, concentrations of parent and alkylated PAHs, and products of biotransformation of PAH in five species of large-bodied fishes consumed by humans in communities in the Lower Athabasca and Slave River basin. These results will be useful for establishing the status and trends and spatial distribution of PAHs during monitoring of the lower Athabasca basin and most importantly, as a valuable reference point before any potential permitted discharges of wastewaters from processing of oil sands to the AR.

Ce travail a développé une nouvelle méthode pour l'identification et la quantification des peptides, par l'optimisation de certaines stratégies disponibles appropriées pour le marquage des peptides avec des métaux lanthanide, une séparation par nano-HPLC et détection UV, et suivi par MALDI MS. Tout d'abord, les peptides ont été marqués avec les trois métaux lanthanides différents et un réactif fonctionnel - DOTA. Les résultats montrent que la réaction de transformation en dérivé à l'aide du réactif chélateur DOTA-NHS-ester a été efficace pour des peptides individuels et des mélanges de peptides, vérifiées à partir de la relation m/z obtenue par MALDI MS. L'application optimisée d’un complexe (Cytochrome C digest) a montré des résultats comparables à ceux obtenus avec des peptides modèles. En parallèle, nous avons effectué l’optimisation pour la purification de métalloprotéine dans la bile de poisson, qui est signalée entant que biomarqueurs de contamination métallique de l'environnement. Des procédures différentes (différents moments de centrifugation et différentes températures de traitement thermique) et les agents (DTT, β-mercaptoéthanol et TCEP) réduisant ont été apliqués pour purifier les MT isolées de la bile et du foie des poissons (Oreochromis niloticus). Des analyses spectrophotométriques ont été utilisées pour quantifier les échantillons de MT, et le gel SDS-PAGE a été utilisé pour évaluer qualitativement les différents résultats de la procédure. Chaque procédure a en suíte été évaluée statistiquement, une méhtode des surfaces de réponse a été appliquée. Les MT de la bile semblent être plus adéquate pour la surveillance de l'environnement en ce qui concerne l'exposition récente à des xénobiotiques qui peuvent influer sur l'expression protéomique et metalloproteomique de cette matrice biologique. Une procédure d’exposition à des métaux dans le laboratoire a montré que les métaux étaient significativement importante pour l’évaluation de la contamination à partir de la quantification de MT, selon le traitement de données par une techinique de réseau neural. / This work developed a new method for the identification and quantification of peptides, by optimizing some of the available strategies suitable for labeling peptides with lanthanide metals with subsequent separation by nano-HPLC with UV detection, matrix-assisted laser desorption ionization-mass spectrometry (MALDI MS). First, peptides were labeled with the three different lanthanide metals using a functional DOTA-based reagent. The results demonstrate that the derivatization reaction using the chelating reagent DOTA-NHS-ester was effective for single peptides and peptide mixtures, verified from the m/z relation obtained by MALDI MS. The application of the optimized method in a more complex matrix (Cytochrome C digest) showed results comparable to those obtained with model peptides. In parallel, environmental analyses were conducted, by performing the standardization of metalloprotein purification in fish bile, since this matrix has been reported as a biomarker for environmental metal contamination. Different procedures (varying centrifugation times and heat-treatment temperatures) and reducing agents (DTT, β-mercaptoethanol and TCEP) were applied to purify MT isolated from fish (Oreochromis niloticus) bile and liver. Spectrophotometrical analyses were used to quantify the resulting MT samples, and SDS-PAGE gels were used to qualitatively assess the different procedure results. Each procedure was then statistically evaluated. A response surface methodology was applied for bile samples, in order to further evaluate the responses for this matrix. In an environmental context, biliary MT was lower than liver MT, and, bile MT seems to be more adequate in environmental monitoring scopes regarding recent exposure to xenobiotics that may affect the proteomic and metalloproteomic expression of this biological matrix. A procedure for exposure to metals in the laboratory showed that some metals are significantly important for the assessment of contamination from the quantification of MT, according to the data processing by atifical neural network (ANN).

Algumas áreas do canal de Piaçaguera, localizado na Baixada Santista, SP-Brasil, apresenta alto nível contaminação por hidrocarbonetos policíclicos aromáticos (HPA) entre outros contaminantes nos sedimentos. O objetivo do presente estudo foi verificar diferentes biomarcadores de exposição em bile e de efeitos genotóxicos em sangue de peixes, coletados in situ, que poderiam ser utilizados como ferramenta de monitoramento. O canal de Bertioga foi selecionado como região de referência. Embora não seja uma região sem nenhuma interferência de contaminantes, os sedimentos apresentam baixos valores para HPA, metais e atividade mutagênica. A espécie Mugil curema foi selecionada por ser freqüentemente encontrada em ambas as regiões de estudo. Observamos que os peixes coletados no canal de Piaçaguera apresentaram maior porcentagem de micronúcleos e danos ao DNA (ensaio cometa) no sangue quando comparados com a região de referência. Para o teste de micronúcleo, realizamos leituras de 1000 e 4000 células/indivíduo e não foram observadas diferenças estatísticas, sugerindo que o número de 1000 células poderia ser suficiente para gerar dados confiáveis para a espécie Mugil curema. A avaliação de mutagenicidade da bile foi realizada pelo teste Salmonella/microssoma combinado à extração de bile utilizando Blue rayon (BR) com as linhagens TA98, TA100 e YG1041 com e sem S9 (ativação metabólica). As maiores respostas mutagênicas foram observadas para os peixes coletados no canal de Piaçaguera. A mutagenicidade com a linhagem YG1041 na presença de S9 foi mais elevada quando comparado à mutagenicidade observada na ausência de S9 e também em comparação com a sua linhagem parental TA98, indicando a provável presença de compostos da classe das aminas aromáticas na bile como responsáveis pelos efeitos observados. A quantificação de metabólitos equivalentes de HPA foi realizada por HPLC/fluorescência na bile bruta e embora os resultados não se correlacionem com a mutagenicidade, altos níveis também foram encontrados para os peixes coletados no canal de Piaçaguera em comparação com Bertioga. O protocolo de amplificação do gene ras para a espécie Mugil curema foi estabelecido e os genes foram seqüenciados para verificação da presença de mutações. Não foram observadas mutações nos poucos peixes analisados e mais estudos são necessários para verificar a utilização deste biomarcador. O teste de micronúcleo, ensaio cometa e análise de mutagencidade em bile extraída por Blue rayon parecem ser ferramentas biológicas adequadas para monitoramento da qualidade ambiental de estuários contaminados. / Some areas of the Piaçaguera channel at Baixada Santista, SP, Brazil present high levels of polycyclic aromatic hydrocarbons (PAHs) among other contaminants in the sediment. The aim of the present study was to verify if biomarkers of exposure in bile and effect in blood of fishes collected in the field could be used as a monitoring tool. We selected Bertioga channel as a reference area. Although it is not a pristine area, the sediment presents low values of PAHs, metals and mutagenic activity. We selected the fish species Mugil curema, because they are frequently found in both areas during the entire year. We observed that the fish collected at the Piaçaguera channel showed a higher percentage of micronuclei and DNA damage (comet assay) in blood when compared to the Bertioga channel. The micronucleus readings were done in 1000 and 4000 cells/fish and no statistical difference was observed, suggesting that the number of 1000 cells would be sufficient to generate reliable data for the species Mugil curema , in the studied area. The mutagenicity of the bile was performed using the Salmonella/microsome assay combined with Blue rayon (BR) extraction with TA98, TA100 and YG1041 strains with and without rat liver S9. We observed that the mutagenic responses were higher in fish collected in Piaçaguera. The mutagenicity in YG1041 with S9 in fishes collected in the Piaçaguera channel was higher when compared to the mutagenicity observed in the absence of S9 and also higher than the response with the parental strain TA98. The results suggest that mutagenic polycyclic compounds, probably from the class of the aromatic amines are causing the observed effect. PAH metabolites-equivalent were also determined using HPLC/fluorescence in crude bile, and although the results did not correlate with the mutagenicity, higher levels were observed in fish collected in the Piaçaguera channel when compared to Bertioga. A protocol for amplification of the ras gene for the Mugil curema species was established and gene sequenced. No mutations were observed in the liver of the few fishes analyzed, and more studies are required to verify the utility of this biomarker in this fish. The micronuclei, comet assay and mutagenicity in bile extracted with blue rayon seem to be suitable biological tools to monitor the environmental quality of contaminated estuaries.

Algumas áreas do canal de Piaçaguera, localizado na Baixada Santista, SP-Brasil, apresenta alto nível contaminação por hidrocarbonetos policíclicos aromáticos (HPA) entre outros contaminantes nos sedimentos. O objetivo do presente estudo foi verificar diferentes biomarcadores de exposição em bile e de efeitos genotóxicos em sangue de peixes, coletados in situ, que poderiam ser utilizados como ferramenta de monitoramento. O canal de Bertioga foi selecionado como região de referência. Embora não seja uma região sem nenhuma interferência de contaminantes, os sedimentos apresentam baixos valores para HPA, metais e atividade mutagênica. A espécie Mugil curema foi selecionada por ser freqüentemente encontrada em ambas as regiões de estudo. Observamos que os peixes coletados no canal de Piaçaguera apresentaram maior porcentagem de micronúcleos e danos ao DNA (ensaio cometa) no sangue quando comparados com a região de referência. Para o teste de micronúcleo, realizamos leituras de 1000 e 4000 células/indivíduo e não foram observadas diferenças estatísticas, sugerindo que o número de 1000 células poderia ser suficiente para gerar dados confiáveis para a espécie Mugil curema. A avaliação de mutagenicidade da bile foi realizada pelo teste Salmonella/microssoma combinado à extração de bile utilizando Blue rayon (BR) com as linhagens TA98, TA100 e YG1041 com e sem S9 (ativação metabólica). As maiores respostas mutagênicas foram observadas para os peixes coletados no canal de Piaçaguera. A mutagenicidade com a linhagem YG1041 na presença de S9 foi mais elevada quando comparado à mutagenicidade observada na ausência de S9 e também em comparação com a sua linhagem parental TA98, indicando a provável presença de compostos da classe das aminas aromáticas na bile como responsáveis pelos efeitos observados. A quantificação de metabólitos equivalentes de HPA foi realizada por HPLC/fluorescência na bile bruta e embora os resultados não se correlacionem com a mutagenicidade, altos níveis também foram encontrados para os peixes coletados no canal de Piaçaguera em comparação com Bertioga. O protocolo de amplificação do gene ras para a espécie Mugil curema foi estabelecido e os genes foram seqüenciados para verificação da presença de mutações. Não foram observadas mutações nos poucos peixes analisados e mais estudos são necessários para verificar a utilização deste biomarcador. O teste de micronúcleo, ensaio cometa e análise de mutagencidade em bile extraída por Blue rayon parecem ser ferramentas biológicas adequadas para monitoramento da qualidade ambiental de estuários contaminados. / Some areas of the Piaçaguera channel at Baixada Santista, SP, Brazil present high levels of polycyclic aromatic hydrocarbons (PAHs) among other contaminants in the sediment. The aim of the present study was to verify if biomarkers of exposure in bile and effect in blood of fishes collected in the field could be used as a monitoring tool. We selected Bertioga channel as a reference area. Although it is not a pristine area, the sediment presents low values of PAHs, metals and mutagenic activity. We selected the fish species Mugil curema, because they are frequently found in both areas during the entire year. We observed that the fish collected at the Piaçaguera channel showed a higher percentage of micronuclei and DNA damage (comet assay) in blood when compared to the Bertioga channel. The micronucleus readings were done in 1000 and 4000 cells/fish and no statistical difference was observed, suggesting that the number of 1000 cells would be sufficient to generate reliable data for the species Mugil curema , in the studied area. The mutagenicity of the bile was performed using the Salmonella/microsome assay combined with Blue rayon (BR) extraction with TA98, TA100 and YG1041 strains with and without rat liver S9. We observed that the mutagenic responses were higher in fish collected in Piaçaguera. The mutagenicity in YG1041 with S9 in fishes collected in the Piaçaguera channel was higher when compared to the mutagenicity observed in the absence of S9 and also higher than the response with the parental strain TA98. The results suggest that mutagenic polycyclic compounds, probably from the class of the aromatic amines are causing the observed effect. PAH metabolites-equivalent were also determined using HPLC/fluorescence in crude bile, and although the results did not correlate with the mutagenicity, higher levels were observed in fish collected in the Piaçaguera channel when compared to Bertioga. A protocol for amplification of the ras gene for the Mugil curema species was established and gene sequenced. No mutations were observed in the liver of the few fishes analyzed, and more studies are required to verify the utility of this biomarker in this fish. The micronuclei, comet assay and mutagenicity in bile extracted with blue rayon seem to be suitable biological tools to monitor the environmental quality of contaminated estuaries.

[pt] Método de identificação e quantificação de peptídeos, através da otimização de estratégias para a marcação de peptídeos com metais e subsequente separação por nano-HPLC-UV, MALDI MS. Primeiramente, peptídeos foram marcados com 3 diferentes metais lantanídeos usando um reagente funcional NHS-DOTA. Os resultados demonstraram que a reação de derivatização usando o reagente quelante DOTA foi eficiente para peptídeos simples e misturas dos mesmos, verificada através do MALDI MS a partir da relação m/z. Em paralelo, análises ambientais foram realizadas pela otimização de um procedimento de extração de metalotioneína em bílis de peixe, uma vez que esta matriz tem sido reportada como um biomarcador ambiental de contaminação por metal. Diferentes procedimentos e agentes de redução foram aplicadas para a extração de metalotioneína em bílis e fígado de peixe (Oreochromis niloticus. Análises espectrofotométricas foram realizadas a fim de quantificar os extratos de MT, e gel SDS-PAGE foi usado para avaliação qualitativa dos diferentes procedimentos usados. Cada procedimento foi avaliado estatisticamente. Metodologia de superfície de resposta foi aplicada para amostras de bílis, a fim de avaliar a resposta desta matriz. Em um contexto ambiental, concentrações de MT biliar foi mais baixa que MT do fígado, no entanto, a primeira mostrou-se mais adequada para um monitoramento ambiental. / [en] This work developed a new method for the identification and quantification of peptides, by optimizing some of the available strategies suitable for labeling peptides with lanthanide metals with subsequent separation by nano-HPLC with UV detection, matrix-assisted laser desorption ionization-mass spectrometry (MALDI MS). First, peptides were labeled with the three different lanthanide metals using a functional DOTA-based reagent. The results demonstrate that the derivatization reaction using the chelating reagent DOTA-NHS-ester was effective for single peptides and peptide mixtures, verified from the m/z relation obtained by MALDI MS. In parallel, environmental analyses were conducted, by performing the standardization of metalloprotein purification in fish bile, since this matrix has been reported as a biomarker for environmental metal contamination. Different procedures and reducing agents were applied to purify MT isolated from fish (Oreochromis niloticus) bile and liver. Spectrophotometrical analyses were used to quantify the resulting MT samples, and SDS-PAGE gels were used to qualitatively assess the different procedure results. A response surface methodology was applied for bile samples. In an environmental context, biliary MT was lower than liver MT, and, bile MT seems to be more adequate in environmental monitoring scopes. / [fr] Ce travail a développé une nouvelle méthode pour l identification et la quantification des peptides, par l optimisation de certaines stratégies disponibles appropriées pour le marquage des peptides avec des métaux lanthanide, une séparation par nano-HPLC et détection UV, et suivi par MALDI MS. Tout d abord, les peptides ont été marqués avec les trois métaux lanthanides différents et un réactif fonctionnel - DOTA. Les résultats montrent que la réaction de transformation en dérivé à l aide du réactif chélateur DOTA-NHS-ester a été efficace pour des peptides individuels et des mélanges de peptides, vérifiées à partir de la relation m/z obtenue par MALDI MS. En parallèle, nous avons effectué l optimisation pour la purification de métalloprotéine dans la bile de poisson, qui est signalée entant que biomarqueurs de contamination métallique de l environnement. Des procédures différentes et les agents réduisant ont été apliqués pour purifier les MT isolées de la bile et du foie des poissons (Oreochromis niloticus). Des analyses spectrophotométriques ont été utilisées pour quantifier les échantillons de MT, et le gel SDS-PAGE a été utilisé pour évaluer qualitativement les différents résultats de la procédure. Chaque procédure a en suíte été évaluée statistiquement, une méhtode des surfaces de réponse a été appliquée. Les MT de la bile semblent être plus adéquate pour la surveillance de l environnement en ce qui concerne l exposition récente à des xénobiotiques qui peuvent influer sur l expression protéomique et metalloproteomique de cette matrice biologique.