Proper formation of the heart is a critical developmental event which requires strict regulation of coordinated cardial cell adhesion, alignment, and migration. The simple, tube-like heart of the fruit fly, Drosophila melanogaster, has proven to be an attractive system in which to study the regulatory pathways which control cardiogenesis. This is mainly due to its strikingly similarity to the vertebrate heart during early embryogenesis. In addition, many genes identified in association with congenital heart disease in humans have homologues in Drosophila, suggesting that this model organism has great potential to contribute to cardiovascular research. The extracellular matrix protein encoded by slit is a ligand for the receptors Robo, and Robo2 (lea). Recently, a third receptor for Slit has been identified as the heparin sulfate proteoglycan Syndecan. The main objective of this thesis was to use time lapse confocal imaging in order to develop further understanding of the mechanisms which result in heart assembly defects in slit, robo, lea, and syndecan mutants. We also aimed to gain a better understanding of the role of Syndecan within the Slit-Robo pathway and elucidate its relative contribution to development of the mature heart. In mutants homozygous for slit, as well as mutants doubly heterozygous for robo and lea, cardial cell alignment, adhesion, and synchronized migration were disrupted. The heart phenotype of syndecan homozygous mutants was similar that of slit and robo, lea, however the migration speed of cells to the midline did not seem to be affected. Based on our findings, we hypothesize that Slit may have Syndecan-dependent and Syndecan-independent functions in the heart. / Thesis / Master of Science (MSc)

La morphogenèse de la glande mammaire résulte de la coordination de différentes voies, incluant l'apoptose, la prolifération, la différenciation et la dynamique des cellules souches/progénitrices. La transition épithéliale-mésenchymateuse (EMT) semble être impliquée dans ces voies de signalisation. Ainsi, nous nous sommes concentrés sur le facteur de transcription Slug, un gène clé régulant l'EMT, et son implication dans la morphogenèse de la glande mammaire. Dans un premier temps, en utilisant un modèle de souris transgéniques Slug-Lacz, nous avons localisé Slug dans une sous-population couvrant 10 à 20% des cellules basales du tubule et des cap cells du bourgeons terminal, coexprimant les marqueurs P-cadhérine, CK5, CD49f. Ensuite, nous avons montré par des expériences in vitro de perte et de gain de fonction, que Slug régulait la différenciation et la prolifération des cellules épithéliales mammaires. De plus, nous avons trouvé que Slug inhibait l'apoptose, promouvait la motilité cellulaire, et permettait l'émergence et la croissance de mammosphères clonales. Ce dernier point montre l'implication de Slug dans les cellules souches, qui est renforcé par le fait que des cellules primaires déficientes pour Slug étaient incapables de donner des mammosphères secondaires. Par ailleurs, nous avons pu observer in vivo que les souris déficientes pour Slug présentaient un retard de développement de la glande mammaire, possédant moins de cellules en prolifération, et une surexpression des marqueurs des cellules luminale CK8/18, GATA3 et ER. D'autres gènes régulant l'EMT sont retrouvés surexprimés, suggérant un mécanisme de compensation, qui peut expliquer le fait que le retard de développement de la glande mammaire est rattrapé à l'âge adulte. Les glandes mammaires Slug-knockout présentaient également des branchements excessifs, évoquant une différenciation précoce, similaire aux glandes mammaires de souris déficientes pour la P-cadhérine, exprimée dans les cellules basales. Sachant cela, nous avons constaté que la P-cadhérine était diminuée dans les glandes mammaires Slug-knockout, et dans les cellules CommaDβ traitées par siRNA ciblant Slug. Nous avons alors trouvé que Slug se liait directement au promoteur de la P-cadhérine et l'activait, et que cette dernière intervenait dans certains effets fonctionnels de Slug, tels que la croissance de mammosphères, la différenciation et la migration cellulaire. Ainsi, nous avons montré l'importance d'une nouvelle voie de signalisation Slug/P-cadhérine dans les capacités souches/progénitrices des cellules épithéliales mammaires, intégrant la différenciation et la motilité cellulaire, et nous avons maintenant une meilleure compréhension de son rôle dans l'agressivité de certains cancers du sein. / Mammary gland morphogenesis results from the coordination of different pathways, including apoptosis, proliferation, differentiation, and stem/progenitor cell dynamics. Epithelial-mesenchymal transition (EMT) appears to be involved in these signalling pathways. Thus, we focused on transcription factor Slug, a key gene regulating EMT, and its involvement in mammary gland morphogenesis. First, using a Slug–LacZ transgenic mice model, we located Slug in a subpopulation covering about 10–20% basal duct cells and cap cells of terminal end bud, coexpressed with basal markers P-cadherin, CK5 and CD49f. Then, we have shown by in vitro experiments of loss and gain of function that Slug regulated the differentiation and proliferation of mammary epithelial cells. Moreover, we found that Slug inhibited apoptosis, promoted cell motility, and allowed the emergence and growth of clonal mammospheres. This last point shows the involvement of Slug in stem cells, which is reinforced by the fact that primary cells deficient for Slug were unable to give secondary mammospheres. Furthermore, we observed in vivo that mice deficient for Slug showed delayed development of the mammary gland, with less proliferating cells, and overexpression of markers of luminal cells CK8/18, GATA3 and ER. Other genes regulating EMT are found overexpressed, suggesting a compensatory mechanism, which can explain the fact that the delayed development of the mammary gland is caught up in adulthood. The Slug-knockout mammary glands also showed overbranching, evoking an early differentiation, similar to the mammary glands of mice deficient in P-cadherin, expressed in the basal cells. Knowing this, we found that P-cadherin was decreased in Slug-knockout mammary glands, and in CommaDβ cells treated with siRNA targeting Slug. We then found that Slug binds directly to the promoter of the P-cadherin and activated it, and that P-cadherin was involved in some functional effects of Slug, such as mammospheres growth, differentiation and cell migration. Thus, we have shown the importance of a new signalling pathway Slug/P-cadherin in the capacity of mammary epithelial stem/progenitor cells, integrating differentiation and cell motility, and we now have a better understanding of its role in the aggressiveness of some breast cancers.

Le bassin supérieur de l’oued Djemaa qui fait partie de la montagne du Djurdjura est affecté par une importante morphogenèse. Les mouvements de terrain présentent une grande variété dans le secteur d’étude et jouent un rôle prépondérant dans l’évolution des versants. L’étude géomophologique détaillée, une enquête auprès des populations locales, des analyses géotechniques et l’analyse sédimentologique des formations déplacées nous ont permis de faire une typologie des mouvements de terrain et de dégager les facteurs de leur développement et de leur localisation. Les fortes précipitations d’hiver et de printemps sont à l’origine de tous les mouvements de terrain et des ravinements, mais l’exposition et la lithologie permettent de comprendre les formes différentes rencontrées sur les adrets et sur les ubacs. Les activités humaines jouent un rôle croissant dans l’accélération de la morphogenèse. Dans cette étude, un système d’Information Géographique a été utilisé pour produire les cartes des risques de dégradation du milieu qui sont des outils pour la planification et la gestion de l’utilisation du sol dans le bassin supérieur de l’oued Djemaa. Il permet de croiser la vulnérabilité avec l’aléa. Le résultat de ces croisements que nous avons codifiés débouche sur une carte globale de niveaux de risque / The upper basin of the oued Djemaa which includes to the mountain of Djurdjura is affected by an important morphogenesis. The ground movements introduces a large variety in the study area and play a preponderant role in the evolution of mountainsides. The geomorphology detailed study an investigation into the local populations, geotechtonic and analyses it sedimentology of displaced trainings allows us to do ground typology movement and to chow theire development factors and their location. The big rainfalls of winter and sprinter are the origin of these ground movements and gully erosions, but exposition and lithology allow to understand different forms on northern and southern slope. Human activities play more and more an important role in morphogenesis acceleration. In this study, a geographical information system has been used to provide degradation maps of risks of which are tools for planning and management of soil using in the upper basin of the oued Djemaa. He allows to cross vulnerability witch vagary. The result of these crossroads which we codified results in a total map of risk levels

Les épithéliums jouent le rôle fondamental de barrière physique et chimique chez les Métazoaires. Les jonctions adhérentes, par le biais de la protéine transmembranaire E-cadhérine (E-cad), assurent une grande partie de l’adhésion intercellulaire. Malgré cette robustesse, les épithéliums peuvent subir des remodelages considérables pendant l’embryogenèse ou la cicatrisation. Lors de la gastrulation de l’embryon de Drosophile, l’épithélium ventro-latéral (la bandelette germinale) subit une élongation le long de l’axe antéropostérieur induite par l’intercalation cellulaire. Le remodelage polarisé des jonctions cellulaires est à la base de ce phénomène: les jonctions parallèles à l’axe dorsoventral (DV) rétrécissent et forment de manière irréversible de nouvelles jonctions parallèles à l’axe antéropostérieur (AP). Ce remodelage dépend de l’enrichissement du moteur moléculaire Myosine II (MyoII) dans les jonctions DV, qui induit une anisotropie de tension. Les protéines des jonctions adhérentes (E-cad, β-catenin) sont, elles aussi, polarisées : elles sont enrichies dans les jonctions AP. Néanmoins, nous ne savions pas si cette polarité de l’adhésion avait un rôle dans le remodelage des jonctions, et nous ne connaissions pas les mécanismes contrôlant cette localisation asymétrique. L’un des mécanismes les mieux connus de la modulation de l’adhésion cellulaire est l’endocytose des protéines d’adhésion. A ce titre, je me suis intéressé au rôle de l’endocytose Clathrine dépendante (ECD) pendant l’intercalation cellulaire. J’ai ainsi pu montrer que l’ECD de E-cad est régulée à la hausse dans la bandelette germinale au niveau jonctionnelle, plus particulièrement au niveau des jonctions DV (qui rétrécissent). L’ECD d’E-cad est nécessaire à l’intercalation et à la distribution polarisée d’E-cad. Elle est régulée par l’organisation de l’actine: la formine Diaphanous ainsi que le moteur moléculaire Myosine II accélèrent le recrutement de la machinerie d’endocytose (AP2 et Clathrine) et régulent la polarité de l’ECD dans l’embryon. Elles sont contrôlées par RhoGEF2, qui est enrichie dans les jonctions DV, et induisent l’endocytose par un mécanisme de clustering latéral d’E-cad. Dans la seconde partie de ma thèse, je me suis intéressé au couplage entre E-cad et la dynamique de MyoII. En effet, l’intercalation dépend aussi de flux contractiles de MyoII qui ont lieu préférentiellement en direction des jonctions DV. J’ai ainsi pu montrer que la direction des flux est induite par les anisotropies de forces d’ancrage de MyoII. Les faibles niveaux d’E-cad et le fort taux d’endocytose dans les jonctions DV augmentent la probabilité de générer une anisotropie d’ancrage et induisent davantage de flux de MyoII vers les jonctions DV. Ce projet met en lumière le rôle fondamental du couplage entre E-cad et MyoII dans la régulation de la morphogenèse. / Epithelia build up strong mechanical and chemichal barriers in Metazoans. Adherens junctions, through the adhesion provided by the transmembrane protein E-cadherin (E-cad), are essential for the mechanical integrity of the tissue. Yet, epithelia can be dramatically remodeled during embryogenesis or wound healing. During gastrulation of Drosophila embryo, the ventrolateral epithelium (the germ band) undergoes a massive elongation along the anteroposterior (AP) axis, driven by cell-cell intercalation. This is based on the polarized remodeling of intercellular junctions whereby junctions parallel to the dorsoventral axis (DV) shrink and form new junctions along AP axis. This remodeling is mediated by the planar polarized enrichment of Myosin II (MyoII) in DV junctions, which generates high tension. Adhesion proteins are also planar polarized, E-cad is enriched in AP junctions, but we did not know if this polarity contributed to cell-cell intercalation and the mechanism driving this polarity. As such, I have studied the role of Clathrin mediated endocytosis (CME) during germ band extension. I have shown that E-cad CME is specifically upregulated at the junction plane in the germ band, and planar polarized (enriched in DV shrinking junctions). It is required for cell-cell intercalation and the planar polarized distribution of E-cad. E-cad CME is regulated by the concerted action of the Formin Diaphanous and Myosin-II, which accelerates CME through the lateral clustering of E-cad. They are controlled by RhoGEF2, which is also enriched in DV junctions. In the second part of my PhD, I have studied the coupling between E-cad and MyoII dynamics. Indeed, planar polarized contractile flows of MyoII are required for DV junction shrinkage, but we did not know the mechanism driving the polarity of these flows. I have shown that the transient anisotropy of anchoring forces between two facing junctions triggers flow. As such, the low steady state amount of E-cad and the high rate of CME in DV junctions trigger more anisotropy and polarize the flow. These results outline the strong crossregulation between E-cad and MyoII and their concerted action in morphogenesis.

Un tissu épithélial est composé de cellules polarisées, étroitement liées les unes aux autres par des jonctions adhérentes. La perte de ces jonctions adhérentes est la première étape dans le développement des cancers au niveau des tissus épithéliaux. Il est donc important de comprendre les mécanismes d’attachement inter-cellulaire. Pour étudier ces interactions, nous utilisons comme modèle l’embryon de drosophile, où une fine régulation des jonctions adhérentes est requise pour l’une des étapes précoces de développement. Durant cette étape du développement, les cellules épithéliales changent de voisines le long de l’axe antéro-postérieur sans perdre leur adhérence cellulaire. Ce processus d’intercalation cellulaire est dû au recrutement polarisé du moteur moléculaire Myosine II au niveau des jonctions qui se désassemblent. Il a été mis en évidence qu’au cours de ce processus la perte de fonction de la voie JAK/STAT perturbe la localisation de la Myosine II. Au cours de ma thèse, j’ai réalisé un crible génétique dans un contexte mutant pour le ligand de la voie JAK/STAT pour me permettre d’identifier des interacteurs potentiellement impliqués dans le contrôle spatial de Myosine II. J’ai pu mettre en évidence plusieurs gènes pouvant être impliqués dans cette intercalation. Parmi ces candidats, je me suis focalisée sur celui montrant le plus fort phénotype : le gène CG13992. La caractérisation de ce gène a fut la seconde étape de mon travail de thèse (car seules les séquences nucléotidiques et protéiques étaient connues). Les résultats obtenus ont permis de mettre en évidence l’implication de ce gène dans la localisation de la Myosine II mais ils restent à confirmer. / Epithelial tissue is composed of polarized cells, which are closely attached to each other by adherens junctions. The loss of adherens junctions is often a key step in the development of cancer in epithelial tissues. It is therefore important to understand the mechanisms of attachment between the cells. To study such epithelial plasticity, we use the Drosophila embryo as a model system, where a fine regulation of adherens junctions is required for one of the early processes of development: germ band elongation. During this process, epithelial cells change their neighbors along the anterior-posterior axis (cell cell intercalation) without loss of cell adhesion. Polarized recruitment of the molecular motor Myosin II at the junctions, that disassemble and reassemble, underlies the intercalation process. In part, intercalation relies on the normal activity of the the JAK / STAT pathway that is crucial for the spatial control of Myosin II. During my PhD, I conducted a genetic screen, in a mutant for the ligand of the JAK / STAT pathway, designed to identify second site interactors for Myosin II control. I identified several genes that appear to be involved in the intercalation process. Among these candidates, I focused on one with the strongest phenotype: the gene CG13992. The functional characterization of this gene was the second stage of my thesis (because only the nucleotide and the protein sequences were known). Preliminary results highlight the involvement of this gene in the localization of Myosin II that remain to be confirmed.

Ce manuscrit de thèse est composé de trois parties dédiées aux développements technologiques nécessaires à l'étude de la polarité et des contraintes mécaniques dans les cellules épithéliales. La première partie décrit les développements technologiques et méthodologiques qui ont été réalisés en micro-fabrication et traitement de surface, acquisition et analyse d'image, et mesure des forces de traction. La deuxième partie décrit l'étude de l'organisation spatiale du système d'adhérence des cellules épithéliales. De la régulation de leur polarité à celle de leur fonction, l'architecture des cellules épithéliales est profondément liée à leur système d'adhérence. Nous avons utilisé les micropatrons adhésifs pour contrôler la géométrie de la matrice extra-cellulaire pour examiner l'effet de l'adhérence des cellules avec la matrice sur la position des zones d'adhérence intercellulaire. Nos résultats montrent que l'organisation spatiale de l'adhérence cellule-matrice joue un rôle déterminant sur celle de l'adhérence intercellulaire. Ils montrent également que cette organisation dirige ensuite la position du centrosome et l'orientation de l'ensemble de la polarité interne. Lors d'une réorganisation spatiale de l'épithélium, comme c'est le cas au cours de la transition épithélium-mésenchyme, les systèmes d'adhérence et la polarité interne subissent tous les deux de profondes modifications. Néanmoins, les cellules semblent capables de les réguler de façon indépendante selon le type de stimulus qui induit la réorganisation. La dernière partie est une analyse des paramètres physiques impliqués dans l'architecture épithéliale. En parallèle des régulations biochimiques, les contraintes mécaniques jouent également un rôle fondamental dans la régulation des processus morphogenétiques. L'association de l'ensemble de nos développements technologiques (patterning de substrat déformable, logiciel de détection et de mesure de force, contrôle du positionnement des cellules) nous a permis d'analyser précisément les propriétés mécaniques des architectures multicellulaires. Nous avons découvert que l'organisation spatiale du système adhérence était un régulateur majeur de l'intensité et de la répartition des forces intra-cellulaires. Cette observation nous a permis de proposer une modification du modèle actuel de distribution des contraintes dans un épithélium qui prend en compte l'anisotropie des forces inter-cellulaires en réponse à l'hétérogénéité de la matrice extra-cellulaire. Ce nouveau modèle physique permet de rendre compte des positions adoptées par les cellules en réponse aux différentes géométries de la matrice extra-cellulaire. / This thesis dissertation is comprised of three major parts. The first part devotes to all the technological developments that have been realized in my thesis study. These developments in microfabrication, in image acquisition and analysis, and in the traction force analysis had solved various problems we have encountered during our study of epithelial architecture. The second part describes the study of the spatial organization of the adhesion systems in epithelia. From their polarity, their functioning, to their remodeling, the epithelial architecture is deeply linked with the adhesion systems. With the capability to well define the location of cell-matrix interaction, we examined how the intercellular adhesion was organized according to the cell-matrix adhesion. Our results highlighted the instructive role of cell-matrix adhesion in organizing the intercellular adhesion. This organization subsequently governed the internal polarity which was indicated by the centrosome positioning. During epithelial remodeling, both the adhesion system and internal polarity were subjected to modification. Nevertheless they could be regulated differently depending on the context of remodeling. The last part is focused on the physical aspect of the epithelial architecture. Apart from the biochemical signaling network, mechanical force is also a substantial ingredient in morphogenesis. Together with our techniques in micropatterning the soft gel, the development of software for traction force microscope, and our knowledge of cell-cell positioning, we were able to analyze precisely the mechanical property of the multicellular architecture. We found that the cellular contractility was modulated by the spatial organization of the adhesion system. It permitted us to complete the current physical model of epithelial geometry with an anisotropic term for contractility. This new physical model could effectively account for the cell positioning on various matrix geometries.

La plupart du temps, les bactéries vivent au sein de biofilms : un tissu biologique accroché sur des surfaces (molles ou solides), qui est composé de bactéries et de matrice extracellulaire. Lors de cette thèse nous avons étudié les mécanismes qui contrôlent la formation d’un biofilm à l’interface eau-air par Bacillus subtilis (BS). D’abord, nous avons observé l’évolution phénotypique de BS au cours du développement de sa population en milieu liquide, dans des conditions de culture standard (pas de biofilm in fine). Nous avons constaté que la population exhibe différents types cellulaires (phénotypes) au cours du temps. Puis, afin d’observer les étapes de la formation d’un biofilm, nous avons créé une expérience qui permet de suivre l’évolution macroscopique de la concentration des bactéries et sa répartition spatiale au sein du milieu de culture. Nous constatons qu’une accumulation de bactéries se forme en dessous de l’interface eau-air avant même l’apparition d’un biofilms. Cette accumulation est concomitante avec de la convection dans le fluide (bioconvection). Le biofilm apparait lors de la phase de croissance de la population en bactérie pour une concentration moyenne dans le milieu de culture de l’ordre de 10¹³ bactéries/m³. Ensuite, nous avons formulé un modèle continu qui renseigne sur l’évolution de l’environnement des bactéries. Ce modèle reproduit la bioconvection observée dans les expériences et révèle son effet sur la concentration en dioxygène dissous dans la culture. Enfin, nous avons construit un modèle hybride continu-discret qui décrit la transition de bactéries déconnectées (nomades) vers des bactéries connectées formant un biofilm solide (sédentaires). Chaque bactérie est considérée comme une particule individuelle. Le modèle tient compte des forces de contact, ainsi que les forces élastiques qui peuvent s’établir entre les bactéries lorsqu’elles sont liées par de la matrice. Un nombre minimal d’aptitudes biologiques a été utilisé pour modéliser les bactéries : la division cellulaire qui leur permet de coloniser le milieu de culture, la motilité et l’aérotactisme qui explique leur migration vers la surface liquide, le quorum sensing (QS) et la différenciation cellulaire qui leur permet de passer du phénotype nomade (motile) au phénotype sédentaire (producteur de matrice). L’environnement en dioxygène des bactéries et les propriétés hydrodynamiques du milieu sont décrits par des champs continus. Le modèle reproduit toutes les étapes de la formation d'un biofilm observées dans nos expériences et confirme la nécessité de certaines aptitudes biologiques. Il montre que le seuil de QS joue un rôle majeur dans la morphologie du biofilm et sa cinétique de formation. En revanche, le taux de consommation de dioxygène par les bactéries ne semble pas avoir de rôle important. Enfin, nous avons établi que la bioconvection agit comme un retardateur de la formation du biofilm. / Most of the time, the bacteria live inside the biofilm: the biological tissue that is attached to the surface (soft or solid), is made of the bacteria and of extracellular matrix. According to this thesis we study the mechanics that control the formation of a biofilm at the interface water-air by Bacillus subtilis (BS). First, we absorbed the phenotype evolution of the BS during the development of its population in liquid medium, under the conditions of a standard culture (no of biofilm in fine). We noticed that the population exhibits different cellular types (phenotypes) during this time. Then, after absorbing the different stages of the development in the formation of a biofilm, we created an experience that allows us to follow the macroscopic evolution of the concentration of the bacteria and its special distribution in the middle of the culture. We found that an accumulation of the bacteria forms under the surface water-air, even before the appearance of a biofilm. This accumulation is concomitant with the conservation in the liquid (bioconvection). The biofilm appears during the growth phase of the bacterial population in an average concentration in the culture medium of about 10¹³ bacteria / m³. Then, we formed a continuous model that shows us the evolution of the environment of the bacteria. This model reproduced the bioconvection that was observed in the experiments and reveals its effect on the concentration of oxygen in the biological culture. Finally we built a hybrid continuous-discreet model that described the transition of the disconnected bacteria (nomads) through the connected bacteria that form a solid biofilm (sedentary). Each bacteria is considered as an individual particle. The model takes the contact forces under consideration, as well as the elastic forces that can settle between the bacteria when linked by the matrix. A minimum number of biological skills were used to form a model from the bacteria; the cellular division that allowed it to colonize the medium biological culture, the motility and the aerotaxi that explains its migration towards the liquid surface, the quorum sensing (QS) and the cellular differentiation that allows them to spend nomadic phenotype (motile) sedentary phenotype (producer of matrix). The dioxygen environment of the bacteria and its middle hydrodynamic properties are described by continuous fields. The model reproduces all the formation steps of an observed biofilm in our experiment and confirms the need of certain biological skills. It shows that the threshold of QS plays a major role in the morphology and biofilm formation kinetics. On the other hand, the rate of diocygen consumption by the bacteria does not seem to have any significant role. Finally, we established that the bioconvection reacts as a retardant in the biofilm formation.

Os sistemas de integração lavoura-pecuária-floresta estão sendo difundidos por todo o território nacional como medida de atenuação dos impactos causados pelo monocultivo e como estratégia de recuperação de pastagens degradadas. Inúmeras vantagens do sistema são apontadas, no entanto, a inclusão de espécies arbóreas modifica a qualidade e a quantidade da luz disponível para o pasto, provocando alteração no seu padrão de crescimento (vertical e horizontal) e produção de forragem. Partindo da hipótese que em um sistema silvipastoril o dossel arbóreo irá determinar a quantidade e a qualidade de luz disponível para o sub-bosque e, assim, influenciar a dinâmica de crescimento e ocupação da área pelo capim-piatã manejado sob pastejo rotativo utilizando metas de interceptação luminosa (IL) prépastejo, o objetivo deste trabalho foi quantificar e descrever as respostas morfogênicas, o padrão de perfilhamento e os processos de ocupação horizontal de Brachiaria brizantha cv BRS Piatã [(Hochst. ex A. Rich.) Stapf. syn. Urochloa brizantha cv. BRS Piatã (Hochst. ex A. Rich.) R.D. Webster] em sistema ILPF de dezembro de 2013 a julho de 2014. O estudo foi desenvolvido por meio de três experimentos realizados de forma concomitante para avaliar três regimes de luz: (1) capim-piatã cultivado em área livre de árvores (pleno sol; PS); (2) sombreamento gerado por meio de fileiras duplas de Eucalipto nas bordaduras dos piquetes (S1); e (3) sombreamento gerado por meio de quatro renques de fileiras triplas de Eucalipto dispostos dentro dos piquetes de forma alternada com porções de pasto (S2). Os regimes de luz S1 e S2 foram divididos em duas faixas de sombra (central e lateral) para descrição da variação da luz dentro dos piquetes. O período experimental foi dividido em três períodos de avaliação em função do índice pluviométrico registrado. Para estudar a influência das árvores sobre a medição de IL, o regime S2 foi manejado utilizando-se dois métodos de tomada da leitura de referência da luz incidente: leitura dentro (sob a copa das árvores) e fora (ausência de árvores) da área experimental. O aumento na densidade de árvores provocou redução na radiação fotossinteticamente ativa (RFA) de 37 e 12% nas faixas lateral e central em S1 (181 árvores.ha-1) e de 53 e 49% para as faixas lateral e central em S2 (718 árvores. ha-1). O sombreamento influenciou praticamente todas as variáveis-resposta avaliadas, resultando em redução do perímetro médios das touceiras (50%), aumento da frequência de touceiras pequenas (perímetro < 30 cm), diminuição da frequência de touceiras grandes (perímetro > 61 cm), diminuição da densidade populacional (35%) e estabilidade da população de perfilhos (6%), aumento das taxas de alongamento de folhas (16%) e de colmos (594%) e em área foliar específica (40%). O método da leitura de referência para avaliação de IL resultou em maior comprimento de folhas (14%) e de colmos (37%) quando as leituras foram feitas dentro comparativamente a fora da área experimental. Pastos sombreados alteram seu padrão de crescimento e ocupação da área como medida para evitar o sombreamento e maximizar a captação de luz, modificações essas importantes para planejar e definir metas de manejo do pastejo em áreas de ILPF. / Crop-livestock-forest systems are becoming increasingly popular in Brazil as a means of attenuating the impact of monoculture and to aid in the recovery of degraded grassland areas. Several advantages of this technique have been highlighted, but the inclusion of trees impacts the quantity and the quality of the light available for forage plants growing beneath them, resulting in changes in forage growth (horizontal and vertical) and in herbage production. Based on the hypothesis that in a silvipastoral system the tree canopy determines the quantity and the quality of the light available for forage plants growing below, and that this affects forage growth dynamics and horizontal spreading in rotationally grazed Piatã brachiariagrass managed using pre-grazing light interception targets during regrowth, the objective of this study was to evaluate the morphogenetic responses, tillering, and horizontal growth of Brachiaria brizantha cv. Piatã [(Hochst. ex A. Rich.) Stapf. syn. Urochloa brizantha cv. BRS Piatã (Hochst. ex A. Rich.) R.D. Webster] in a crop-livestock- forest integration area from December 2013 to July 2014. The study comprised three simultaneous experiments to evaluate three light regimes: (1) Piatã brachiariagrass cultivated in the absence of trees (full natural light; PS); (2) shade produced by a double row of Eucaliptus trees on the edges of the paddocks (S1); and (3) shade produced by four triple rows of Eucaliptus with pasture in between them (S2). The S1 and S2 light regimes were divided into two shade strips (central and lateral) in order to describe the variation in light availability within the paddocks and its implications to plant growth. The experimental period was divided in three evaluation periods according to rainfall. In order to evaluate the influence of the trees on the measurement of sward canopy light interception and its implications on grass growth, paddocks under the S2 light regime were managed using two methods for taking the reference readings of the incident light: reading inside (under the tree canopy) and outside (full natural light) the experimental area. The increase in tree density resulted in a 37 and 12% reduction in photosynthetic active radiation (PAR) for the lateral and central shade strips of S1 (181 trees.ha-1) and 53 and 49% for the lateral and central shade strips of S2 (718 trees.ha-1). Higher shading resulted in reduction in average tussock perimeter (50%), increased presence of small tussocks (perimeter < 30 cm), decreased presence of large tussocks (perimeter > 61 cm), decreased tiller population (35%) and stability index (6%), increased leaf (16%) and stem (594%) elongation rates and increased specific leaf area (40%). Differences among light regimes across evaluation periods were small. Leaves were 14% longer and stems were 37% longer when readings were taken inside compared to those taken outside the experimental area. Under the trees, swards change their growth and spreading patterns as a means of minimizing the effects of shading and maximizing light capture. These changes have important implications for planning and defining targets of grazing management in crop-livestock-forest integration areas.

Characterization of the ontogenic program is essential to infer about palnts adaptation strategies. Frequently, morphogenesis of tropical forage grasses is reported to be analogous to that of temperate forage grasses. However, tropical grasses show stem development still during the vegetative phase of growth and under high light availability conditions. Stem elongation potentially impacts plants growth, with implications for grazing management. In tropical conditions, elephantgrass cv. Napier is considered one of the most productive grass species under grazing. The objective of this study was to characterize the ontogenic development of elephantgrass, coordination between phytomers, stem elongation and leaf and internode coordination in main and primary axes, using an isolated plant protocol. The experiment was conducted in Piracicaba, SP, during the Spring (2015), Summer (2016) and Autumn (2016), using a complete randomized block design, with 4 replicates. Eighty fiber cement tanks (0.343 m3) were used. Each block was composed of 20 tanks, 10 used to evaluate the morphogenic and developmental characteristics and 10 for the destructive evaluations. Measurements of leaf and stem elongation were performed every two days to determine the following variables: leaf appearance rate (LAR), leaf elongation rate (LER), leaf elongation duration (LED) and final leaf length (FLL). From day 10 of the evaluation period in Summer and Autumn and day 25 in Spring, 10 cuts were performed for destructive assessments every 5 days. At the time of the destructive evaluations, the following variables were measured: apical meristem heigth (AMH); sheath tube length (STL); number of expanding leaves (NEL); number of expanded leaves (NEXL). Measurements of sheath length (SL) and internode length (IL) were performed only on the main axis. On the main axis LAR (0.02 leaves degree-days-1) and LER (0.26 cm degree-days-1) were constant, whereas LED and FLL increased with leaf rank on the axis. LED ranged from 150 to 280 degree-days from phytomer 10 to 20. In Autumn, due to flowering, LED decreased with leaf rank. SL increased until reaching a maximum value of approximately 10-12 cm from the phytomer 12-13 onwards. When evaluated in phyllochronic units, similar pattern was observed across seasons of the year for a common leaf rank group. However, in all seasons, higher leaf ranks presented greater LED. Higher LAR were reported for topmost primary axes and LER increased with leaf rank until reaching a maximum, remaining constant afterwards. The LED increased with leaf rank in main and primary axes. The stem elongation began from phytomer 8 on the main axis in all seasons of the year, and in earlier phytomers for the other primary axes. In the main axis, internode length ranged from 0.5-2.0 cm for phytomer 8 until reaching a maximum value of 8-10 cm for phytomers 12-13 onwards, in Spring and Summer. During Autumn, maximum values of internode length were approximately 20 cm. Internode elongation begins concomitantly with the cessation of leaf elongation, and after 5 phyllochronic units from leaf appearance. In all axes, STL increased until reaching a maximum value of approximately 12-13 cm in Summer and 11-12 cm in Spring, coinciding with the beginning of stem elongation. The ontogenic development described for elephantgrass differs from that reported for temperate forage grasses. There was a seasonality effect. Axes development presents a hierarchical and synchronized organization. However, for the upper axes and topmost phytomers behavior is different and needs to be investigated. The stem elongation process can be described by the number of produced leaves. This study provides a key element for understanding phenotypic plasticity and corresponds to an useful information to identify the onset of stem elongation in field conditons. This result can potentially be used for functional-structural plant modelling. / A caracterização do desenvolvimento ontogênico é de fundamental importância para inferir sobre estratégias de adaptação das plantas. Frequentemente, a morfogênese de gramíneas tropicais é reportada como análoga à de gramíneas de clima temperado. No entanto, gramíneas tropicais apresentam colmo ainda na fase vegetativa e com elevada disponibilidade de luz. O alongamento de colmo potencialmente altera a dinâmica do desenvolvimento, com implicações sobre o manejo do pastejo. Em condições tropicais, o capim-elefante cv. Napier é considerado uma das gramíneas mais produtivas sob condições de pastejo. Objetivou-se com esse estudo caracterizar o desenvolvimento ontogênico do capim-elefante, a coordenação entre fitômeros, o alongamento de colmo e a coordenação entre folha e entrenó em perfilhos principais e axilares, em condições de plantas isoladas. O experimento foi conduzido em Piracicaba-SP, durante a Primavera (2015), Verão (2016) e Outono (2016), utilizando um delineamento em blocos completos casualizados, com 4 repetições. Foram instalados 80 tanques de fibrocimento (0,343 m3). Cada bloco era composto por 20 tanques, sendo que 10 foram utilizados para avaliar as características morfogênicas e de desenvolvimento e os outros 10 para as avaliações destrutivas. Medições do alongamento da lâmina foliar e do colmo foram realizadas a cada dois dias, para determinação das variáveis: taxa de aparecimento de folhas (TAF), taxa de alongamento de folhas (TAlF), duração do alongamento de folhas (DAF) e comprimento final da folha (CFF). A partir do dia 10 do período de avaliação no Verão e no Outono e do dia 25 na Primavera, foram feitos 10 cortes para avaliações destrutivas, a cada 5 dias. Por ocasião das avaliações destrutivas, as seguintes variáveis foram medidas: altura do meristema apical (AMA); comprimento do tubo de bainha (CTB); número de folhas em expansão (NFE); número de folhas expandidas (NFEX). Medições da bainha foliar (BF) e do comprimento do entreno (CE) foram realizadas apenas para o eixo principal (perfilho basal). No eixo principal, a TAF (0,02 folhas graus-dias-1) e a TAlF (0,26 cm graus-dias-1) foram constantes, enquanto que a DAF e o CFF aumentou com nível de inserção da folha no perfilho. A DAF variou de 150 a 280 graus-dias do fitômero 10 ao 20. No Outono, em função do florescimento, a DAF diminuiu com o nível de inserção da folha. O comprimento da BF foi crescente até atingir um valor máximo de aproximadamente 10-12 cm do fitômero 12-13 em diante. Quando avaliado em unidades filocrônicas, padrão semelhante foi observado entre épocas do ano para um grupo comum de níveis de inserção de folhas. No entanto, em todas as estações, níveis de inserção de folhas superiores apresentaram maiores DAF. Maiores TAF foram reportadas para eixos primários (perfilhos axilares) localizados acima do nível do solo e a TAlF foi crescente com o nível de inserção da folha até atingir um nível máximo, apartir do qual foi constante. A DAF foi crescente com o nível de inserção da folha em todos os eixos. O alongamento do colmo ocorreu a partir do fitômero 8 no eixo principal em todas as estações do ano, e em fitômeros anteriores para os demais eixos primários. No eixo principal, o CE variou de 0,5-2,0 cm no fitômero 8 até atingir valores máximos de 8-10 cm do fitômero 12-13 em diante, na Primavera e Verão. No Outono, valores máximos de entrenó foram de aproximadamente 20 cm. O alongamento do entrenó inicia-se concomitantemente ao término do alogamento da folha, e a um tempo de 5 filocronos do aparecimento da folha. Em todos os eixos, o CTB aumentou até atingir um valor máximo de aproximadamente 12-13 cm no verão e 11-12 cm na primavera, momento que coincidiu com o início do alongamento do colmo. O desenvolvimento ontogênico descrito para capim-elefante diverge daquele descrito para gramíneas de clima temperado. Houve efeito de sazonalidade. O desenvolvimento dos eixos apresenta organização hierárquica e sincronizada. No entanto, para os eixos superiores e fitômeros acima do nível do solo, o comportamento é diferente. O alongamento do colmo pode ser descrito pelo número de folhas produzidas. Este estudo fornece um elemento-chave para a compreensão da plasticidade fenotítipa e informações úteis para identificar o início do alongamento do colmo no campo. Este resultado pode ser utilizado potencialmente para modelagem de processos estrutura-função da planta.

Die dreidimensionale Sonographie ermöglicht die Beobachtung der menschlichen Morphogenese in utero. Ziel der vorliegenden Untersuchung war die Evaluierung der Darstellung der embryonalen und frühen fetalen Oberflächenmorphogenese mittels transvaginaler 3D-Sonographie unter Anwendung eines neuen Verfahrens (3D-Cut) zur Sichtoptimierung. Fünf Schwangere mit datierten Embryonen wurden longitudinal zwischen der 4. und 12. Woche p.m. transvaginal sonographiert. Die Untersuchungen wurden mit einem 3D-Ultraschallgerät der Firma Kretztechnik (VoluSonâ 530D MT) unter Verwendung einer 3D-Transvaginalsonde (5-8 MHz) durchgeführt. Die 3D-Daten wurden unter Einsatz des 3D-Cut-Verfahrens zu dreidimensionalen Oberflächenmodellen der Embryonen und Feten verarbeitet und mit embryologischen Präparaten gleichen Gestationsalters sowie den Ergebnissen bisheriger 3D-sonoembryologischer Studien verglichen. Die Darstellung der embryonalen und fetalen Oberflächenmorphologie gelang kontinuierlich ab der 6. Woche p.m.. Im chronologischen Verlauf zeigten die beobachteten Embryonen und Feten einen umfangreichen Gestaltwandel von einer C-förmigen Struktur ohne sonographisch fassbare Oberflächendetails hin zu einem Individuum von menschlicher Gestalt. Unter Berücksichtigung der sonographischen Auflösungsgrenzen war eine hohe Übereinstimmung zwischen den sonographischen Oberflächenmodellen und den korrespondierenden embryologischen Präparaten zu verzeichnen. Mit den Ergebnissen 3D-sonoembryologischer Voruntersuchungen ergab sich ebenfalls eine gute Korrelation. Die angewandte sonographische Methode ermöglicht auf nichtinvasive Weise eine detaillierte, systematische dreidimensionale Darstellung von Embryonen und frühen Feten in utero und vermittelt so wertvolle Informationen, die der embryologischen Forschung in dieser Weise bisher nicht zugänglich waren. / Three-dimensional sonography allows the observation of the human morphogenesis in utero. The objective of the presented study was the evaluation of the demonstration of embryonic and early fetal surface morphogenesis by means of transvaginal 3D-sonography using a new procedure (3D-Cut) for the optimization of image quality. Five pregnant women with dated embryos were examined longitudinally by transvaginal 3D-sonography between 3 and 11 completed weeks p.m.. The examinations were performed with a 3D-Ultrasoundmachine (VoluSonâ 530D MT) developed by Kretztechnik (Zipf/Austria) using a transvaginal 5-8 MHz-3D-transducer. The 3D-data were processed to three-dimensional surface models of the embryos and fetuses using the 3D-Cut-procedure and compared with embryologic specimens of corresponding gestational age as well as with the results of prior 3D-sonoembryological studies. Embryonic and early fetal surface morphology could be demonstrated continuously starting from 5 completed weeks p.m.. The observed embryos and fetuses showed an extensive morphological change from a C-shaped structure without sonographically detectable surface details to an individual of human shape. With consideration of the limited sonographic resolution a high agreement between sonographic surface models and the corresponding embryologic specimens was registered. A good correlation was also found with the results of prior 3D-sonoembryological studies. The applied sonographic method allows in a noninvasive way a detailed systematic three-dimensional demonstration of embryos and early fetuses in utero and provides thus valuable information, which was not accessible to embryological research in this way so far.