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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
91

Computational investigations of ion conduction mechanisms using enhanced sampling methods

Ceccarini, Luisa <1980> 12 April 2011 (has links)
Proper ion channels’ functioning is a prerequisite for a normal cell and disorders involving ion channels, or channelopathies, underlie many human diseases. Long QT syndromes (LQTS) for example may arise from the malfunctioning of hERG channel, caused either by the binding of drugs or mutations in HERG gene. In the first part of this thesis I present a framework to investigate the mechanism of ion conduction through hERG channel. The free energy profile governing the elementary steps of ion translocation in the pore was computed by means of umbrella sampling simulations. Compared to previous studies, we detected a different dynamic behavior: according to our data hERG is more likely to mediate a conduction mechanism which has been referred to as “single-vacancy-like” by Roux and coworkers (2001), rather then a “knock-on” mechanism. The same protocol was applied to a model of hERG presenting the Gly628Ser mutation, found to be cause of congenital LQTS. The results provided interesting insights about the reason of the malfunctioning of the mutant channel. Since they have critical functions in viruses’ life cycle, viral ion channels, such as M2 proton channel, are considered attractive targets for antiviral therapy. A deep knowledge of the mechanisms that the virus employs to survive in the host cell is of primary importance in the identification of new antiviral strategies. In the second part of this thesis I shed light on the role that M2 plays in the control of electrical potential inside the virus, being the charge equilibration a condition required to allow proton influx. The ion conduction through M2 was simulated using metadynamics technique. Based on our results we suggest that a potential anion-mediated cation-proton exchange, as well as a direct anion-proton exchange could both contribute to explain the activity of the M2 channel.
92

Petrology and geochemistry of Lipari Island (Aeolian archipelago): constraints on magma genesis and evolution

Forni, Francesca <1979> 27 April 2011 (has links)
A full set of geochemical and Sr, Nd and Pb isotope data both on bulk-rock and mineral samples is provided for volcanic rocks representative of the whole stratigraphic succession of Lipari Island in the Aeolian archipelago. These data, together with petrographic observations and melt/fluid inclusion investigations from the literature, give outlines on the petrogenesis and evolution of magmas through the magmatic and eruptive history of Lipari. This is the result of nine successive Eruptive Epochs developing between 271 ka and historical times, as derived from recentmost volcanological and stratigraphic studies, combined with available radiometric ages and correlation of tephra layers and marine terrace deposits. These Eruptive Epochs are characterized by distinctive vents partly overlapping in space and time, mostly under control of the main regional tectonic trends (NNW-SSE, N-S and minor E-W). A large variety of lava flows, scoriaceous deposits, lava domes, coulees and pyroclastics are emplaced, ranging in composition through time from calcalkaline (CA) and high-K (HKCA) basaltic andesites to rhyolites. CA and HKCA basaltic andesitic to dacitic magmas were erupted between 271 and 81 ka (Eruptive Epochs 1-6) from volcanic edifices located along the western coast of the island (and subordinately the eastern Monterosa) and the M.Chirica and M.S.Angelo stratocones. These mafic to intermediate magmas mainly evolved through AFC and RAFC processes, involving fractionation of mafic phases, assimilation of wall rocks and mixing with newly injected mafic magmas. Following a 40 ka-long period of volcanic quiescence, the rhyolitic magmas were lately erupted from eruptive vents located in the southern and north-eastern sectors of Lipari between 40 ka and historical times (Eruptive Epochs 7-9). They are suggested to derive from the previous mafic to intermediate melts through AFC processes. During the early phases of rhyolitic magmatism (Eruptive Epochs 7-8), enclaves-rich rocks and banded pumices, ranging in composition from HKCA dacites to low-SiO2 rhyolites were erupted, representing the products of magma mixing between fresh mafic magmas and the fractionated rhyolitic melts. The interaction of mantle-derived magmas with the crust represents an essential process during the whole magmatic hystory of Lipari, and is responsible for the wide range of observed geochemical and isotopic variations. The crustal contribution was particularly important during the intermediate phases of activity of Lipari when the cordierite-bearing lavas were erupted from the M. S.Angelo volcano (Eruptive Epoch 5, 105 ka). These lavas are interpreted as the result of mixing and subsequent hybridization of mantle-derived magmas, akin to the ones characterizing the older phases of activity of Lipari (Eruptive Epochs 1-4), and crustal anatectic melts derived from dehydration-melting reactions of metapelites in the lower crust. A comparison between the adjacent islands of Lipari and Vulcano outlines that their mafic to intermediate magmas seem to be genetically connected and derive from a similar mantle source affected by different degrees of partial melting (and variable extent of crustal assimilation) producing either the CA magmas of Lipari (higher degrees) or the HKCA to SHO magmas of Vulcano (lower degrees). On a regional scale, the most primitive rocks (SiO2<56%, MgO>3.5%) of Lipari, Vulcano, Salina and Filicudi are suggested to derive from a similar MORB-like source, variably metasomatized by aqueous fluids coming from the slab and subordinately by the additions of sediments.
93

Hsp90 characterization and inhibition: a multi-methodological study

Binchi, Laura <1982> 12 April 2011 (has links)
Many physiological and pathological processes are mediated by the activity of proteins assembled in homo and/or hetero-oligomers. The correct recognition and association of these proteins into a functional complex is a key step determining the fate of the whole pathway. This has led to an increasing interest in selecting molecules able to modulate/inhibit these protein-protein interactions. In particular, our research was focused on Heat Shock Protein 90 (Hsp90), responsible for the activation and maturation and disposition of many client proteins [1], [2] [3]. Circular Dichroism (CD) spectroscopy, Surface Plasmon Resonance (SPR) and Affinity Capillary Electrophoresis (ACE) were used to characterize the Hsp90 target and, furthermore, its inhibition process via C-terminal domain driven by the small molecule Coumermycin A1. Circular Dichroism was used as powerful technique to characterize Hsp90 and its co-chaperone Hop in solution for secondary structure content, stability to different pHs, temperatures and solvents. Furthermore, CD was used to characterize ATP but, unfortunately, we were not able to monitor an interaction between ATP and Hsp90. The utility of SPR technology, on the other hand, arises from the possibility of immobilizing the protein on a chip through its N-terminal domain to later study the interaction with small molecules able to disrupt the Hsp90 dimerization on the C-terminal domain. The protein was attached on SPR chip using the “amine coupling” chemistry so that the C-terminal domain was free to interact with Coumermycin A1. The goal of the experiment was achieved by testing a range of concentrations of the small molecule Coumermycin A1. Despite to the large difference in the molecular weight of the protein (90KDa) and the drug (1110.08 Da), we were able to calculate the affinity constant of the interaction that was found to be 11.2 µm. In order to confirm the binding constant calculated for the Hsp90 on the chip, we decided to use Capillary Electrophoresis to test the Coumermycin binding to Hsp90. First, this technique was conveniently used to characterize the Hsp90 sample in terms of composition and purity. The experimental conditions were settled on two different systems, the bared fused silica and the PVA-coated capillary. We were able to characterize the Hsp90 sample in both systems. Furthermore, we employed an application of capillary electrophoresis, the Affinity Capillary Electrophoresis (ACE), to measure and confirm the binding constant calculated for Coumermycin on Optical Biosensor. We found a KD = 19.45 µM. This result compares favorably with the KD previously obtained on biosensor. This is a promising result for the use of our novel approach to screen new potential inhibitors of Hsp90 C-terminal domain.
94

Genetic characterization, population history and evolutionary medicine perspective in two native south american populations: Yanesha and Wichi

Yang Yao, Daniele <1983> 03 May 2011 (has links)
Two Amerindian populations from the Peruvian Amazon (Yanesha) and from rural lowlands of the Argentinean Gran Chaco (Wichi) were analyzed. They represent two case study of the South American genetic variability. The Yanesha represent a model of population isolated for long-time in the Amazon rainforest, characterized by environmental and altitudinal stratifications. The Wichi represent a model of population living in an area recently colonized by European populations (the Criollos are the population of the admixed descendents), whose aim is to depict the native ancestral gene pool and the degree of admixture, in relation to the very high prevalence of Chagas disease. The methods used for the genotyping are common, concerning the Y chromosome markers (male lineage) and the mitochondrial markers (maternal lineage). The determination of the phylogeographic diagnostic polymorphisms was carried out by the classical techniques of PCR, restriction enzymes, sequencing and specific mini-sequencing. New method for the detection of the protozoa Trypanosoma cruzi was developed by means of the nested PCR. The main results show patterns of genetic stratification in Yanesha forest communities, referable to different migrations at different times, estimated by Bayesian analyses. In particular Yanesha were considered as a population of transition between the Amazon basin and the Andean Cordillera, evaluating the potential migration routes and the separation of clusters of community in relation to different genetic bio-ancestry. As the Wichi, the gene pool analyzed appears clearly differentiated by the admixed sympatric Criollos, due to strict social practices (deeply analyzed with the support of cultural anthropological tools) that have preserved the native identity at a diachronic level. A pattern of distribution of the seropositivity in relation to the different phylogenetic lineages (the adaptation in evolutionary terms) does not appear, neither Amerindian nor European, but in relation to environmental and living conditions of the two distinct subpopulations.
95

Libertà di manifestazione del pensiero e tecniche argomentative delle Corti costituzionali

Caruso, Corrado <1983> 21 June 2011 (has links)
La ricerca consta di quattro capitoli: nella prima parte si analizzano, in prospettiva empirica, i canoni argomentativi utilizzati dalla Corte costituzionale italiana. Tali canoni possono essere generalmente distinti in due grandi famiglie: giuridico-interpretativi per un verso, e ed empirico fattuali per un altro. In un secondo capitolo si è visto come la Corte costituzionale italiana ha frutto uso di questi canoni nella sua giurisprudenza italiana in tema di diritto soggettivo di libertà di espressione e di mezzi di comunicazione del pensiero. Nel primo caso la Corte costituzionale ha fatto ricorso a canoni interpretativi testuali, mentre nel secondo ad argomentazioni empiriche spesso accompagnate da un giudizio di proporzionalità sull'intervento legislativo. Nella terza parte del lavoro si è invece descritta la giurisprudenza della Corte Suprema americana: è stata analizzata l'evoluzione delle tecniche argomentativi in tema di libertà di espressione: partendo dall'ad hoc balancing e dal definitional balancing si è giunti alla descrizione dei diversi livelli di scrutinio e alla progressiva concettualizzazione delle categorie espressive. Infine nel quarto capitolo si sono messe a confronto le due giurisprudenze: si è potuto così notare che la progressiva categorizzazione del diritto di libertà negli Stati Uniti ha dato esiti maggiormente garantisti, mentre più liberisti in relazione alle concrete dinamiche di formazione del discorso pubblico. Viceversa, in Italia i canoni testuali hanno originato una giurisprudenza più restrittiva quanto al diritto soggettivo e più egualitaria quanto al sistema della libertà di espressione. In ogni caso, entrambe le esperienze evidenziano il ruolo di policy-maker delle Corti costituzionali nei moderni ordinamenti liberal-democratici.
96

Magma injections and destabilization of basaltic volcanoes: a numerical study. Application to La Reunion (Indian ocean, France) and Stromboli (Tyrrhenian sea, Italy)

Catry, Thibault <1985> 23 May 2011 (has links)
Most basaltic volcanoes are affected by recurrent lateral instabilities during their evolution. Numerous factors have been shown to be involved in the process of flank destabilization occurring over long periods of time or by instantaneous failures. However, the role of these factors on the mechanical behaviour and stability of volcanic edifices is poorly-constrained as lateral failure usually results from the combined effects of several parameters. Our study focuses on the morphological and structural comparison of two end-member basaltic systems, La Reunion (Indian ocean, France) and Stromboli (southern Tyrrhenian sea, Italy). We showed that despite major differences on their volumes and geodynamic settings, both systems present some similarities as they are characterized by an intense intrusive activity along well-developed rift zones and recurrent phenomena of flank collapse during their evolution. Among the factors of instability, the examples of la Reunion and Stromboli evidence the major contribution of intrusive complexes to volcano growth and destruction as attested by field observations and the monitoring of these active volcanoes. Classical models consider the relationship between vertical intrusions of magma and flank movements along a preexisting sliding surface. A set of published and new field data from Piton des Neiges volcano (La Reunion) allowed us to recognize the role of subhorizontal intrusions in the process of flank instability and to characterize the geometry of both subvertical and subhorizontal intrusions within basaltic edifices. This study compares the results of numerical modelling of the displacements associated with high-angle and low-angle intrusions within basaltic volcanoes. We use a Mixed Boundary Element Method to investigate the mechanical response of an edifice to the injection of magmatic intrusions in different stress fields. Our results indicate that the anisotropy of the stress field favours the slip along the intrusions due to cointrusive shear stress, generating flank-scale displacements of the edifice, especially in the case of subhorizontal intrusions, capable of triggering large-scale flank collapses on basaltic volcanoes. Applications of our theoretical results to real cases of flank displacements on basaltic volcanoes (such as the 2007 eruptive crisis at La Reunion and Stromboli) revealed that the previous model of subvertical intrusions-related collapse is a likely mechanism affecting small-scale steeply-sloping basaltic volcanoes like Stromboli. Furthermore, our field study combined to modelling results confirms the importance of shallow-dipping intrusions in the morpho-structural evolution of large gently-sloping basaltic volcanoes like Piton de la Fournaise, Etna and Kilauea, with particular regards to flank instability, which can cause catastrophic tsunamis.
97

La inclusión de declaraciones de derechos y principios en los Estatutos de Italia y España / The inclusion of declarations of rights and principles in the Statutes of Italy and Spain / L'inclusione di dichiarazioni di diritti e principi negli Statuti d'Italia e Spagna

Perez Miras, Antonio <1982> 30 March 2012 (has links)
La ricerca riguarda l’inclusione di dichiarazioni di diritti e principi introdotte negli Statuti di autonomia delle Regioni italiane e delle Comunità Autonome spagnole riformati negli ultimi anni. La tesi consta, oltre che nell’introduzione dei concetti preliminari, di due parti per ognuno dei Paesi nelle quali si esaminano i sistemi regionali e concretamente queste carte di diritti e principi. La terza parte raccoglie un’analisi comparativa di ambedue gli Stati. Il problema dell’efficacia di questi diritti e principi rappresenta la chiave fondamentale. In questo senso, la Giurisprudenza costituzionale risulta essere basilare per lo studio delle differenti risposte alle novità dei diversi elenchi di diritti e principi a livello regionale. Mentre la Corte Costituzionale italiana ha negato la loro efficacia giuridica, anche come norme programmatiche assimilabili a quelle costituzionali, il Tribunale Costituzionale spagnolo ha qualificato un nuovo tipo di diritto, i c. d. diritti statutari, che non sono diritti pubblici soggettivi ma mandati ai poteri pubblici autonomici, specialmente al legislatore autonomico. Lo studio si completa con la problematica dell’uguaglianza e la garanzia dei diritti e i principi in questi Stati composti. / This research project deals with the inclusion of declarations of rights and principles in the reformed Statutes of autonomy of the Regions of Italy as well as in the recently amended Statutes of the Spanish Autonomous Communities. This dissertation is divided in several sections. In the introduction the preliminary concepts related to the research topic are introduced. This section is followed by two sections, one per country of study (Italy and Spain), and which follow a similar structure in which the regional systems and, concretely, these charters of rights and principles are examined. The last section consists of a comparative analysis of both States. The issue of the effectiveness of these rights and principles is the key. In this sense, Constitutional Jurisprudence is crucial for the study of the different responses to the lists of rights and principles at regional level. While the Italian Constitutional Court has denied their legal effectiveness, even as programmatic provisions similar to those of constitutional nature, the Spanish Constitutional Court has acknowledged a new type of right, the statutory rights, which are not public subjective rights but rather limitations to the autonomic public authorities, particularly to autonomic legislator. This research project addresses also the issue of equality and guarantee of rights and principles in these complex States.
98

L'interpretazione autentica nei suoi profili teorici ed applicativi / The authentic interpretation in its theoretical and applicative aspects

Orlandi, Elena <1983> 11 June 2012 (has links)
La trattazione cerca di delineare i confini teorici ed applicativi dell’istituto dell’interpretazione autentica, nella chiara consapevolezza che dietro tale tematica si celi il più complesso problema di una corretta delimitazione tra attività di legis-latio e attività di legis-executio. Il fenomeno delle leggi interpretative costituisce infatti nodo nevralgico e punto di intersezione di tre ambiti materiali distinti, ossia la teoria dell’interpretazione, la teoria delle fonti del diritto e la dottrina di matrice liberale della separazione dei poteri. All’interno del nostro ordinamento, nell’epoca più recente, si è assistito ad un aumento esponenziale di interventi legislativi interpretativi che, allo stato attuale, sono utilizzati per lo più come strumenti di legislazione ordinaria. Sotto questo profilo, il sempre più frequente ricorso alla fonte interpretativa può essere inquadrato nel più complesso fenomeno della “crisi della legge” i cui tradizionali requisiti di generalità, astrattezza ed irretroattività sono stati progressivamente abbandonati dal legislatore parallelamente con l’affermarsi dello Stato costituzionale. L’abuso dello strumento interpretativo da parte del legislatore, gravemente lesivo delle posizioni giuridiche soggettive, non è stato finora efficacemente contrastato all’interno dell’ordinamento nonostante l’elaborazione da parte della Corte costituzionale di una serie di limiti e requisiti di legittimità dell’esegesi legislativa. In tale prospettiva, diventano quindi di rilevanza fondamentale la ricerca e l’esame di strategie e rimedi, giurisdizionali ed istituzionali, tali da arginare l’“onnipotenza” del legislatore interprete. A seguito dell’analisi svolta, è maturata la consapevolezza delle potenzialità insite nella valorizzazione della giurisprudenza della Corte Edu, maggiormente incline a sanzionare l’abuso delle leggi interpretative. / The treatment delineates the theoretical and applicative boundaries of the institute of authentic interpretation, in the clear awareness that this issue lurks behind the most complex problem of a proper delimitation between the activities of legis-latio and legis-executio. The phenomenon of the interpretative laws constitutes in fact a nerve centre and a point of intersection of three distinct areas of law, that are the theory of interpretation, the theory of sources of law and the liberal doctrine of the separation of powers. Within our system, in the most recent period, there has been an exponential increase of interpretative legislative interventions that, in the actual state, are used mainly as instruments of ordinary legislation. Under this aspect, the more and more frequent appeal to the interpretative source can be framed in the more complex phenomenon of the “crisis of the law” whose traditional requirements of generality, abstractness and non-retroactivity have been gradually abandoned by the legislator in parallel with the establishment of the constitutional State. The abuse of the interpretative tool by the lawmaker, seriously injurious of the subjective juridical positions, has not yet been effectively thwarted in spite of the elaboration from the constitutional Court of a series of limits and requirements of legitimacy of the legislative exegesis. In this perspective, the research and examination of strategies and jurisdictional and institutional remedies, such as to embank the “omnipotence” of the lawmaker interpreter, become extremely relevant. As a result of the analysis, the investigation has reached the awareness of the potentialities inherent in the development of the jurisprudence of the Court Edu more inclined to punish the abuse of interpretative laws.
99

Development of Original Analytical Methods for the Determination of Drugs of Abuse in Biological Samples

Marcheselli, Chiara <1981> 20 April 2012 (has links)
Drug abuse is a major global problem which has a strong impact not only on the single individual but also on the entire society. Among the different strategies that can be used to address this issue an important role is played by identification of abusers and proper medical treatment. This kind of therapy should be carefully monitored in order to discourage improper use of the medication and to tailor the dose according to the specific needs of the patient. Hence, reliable analytical methods are needed to reveal drug intake and to support physicians in the pharmacological management of drug dependence. In the present Ph.D. thesis original analytical methods for the determination of drugs with a potential for abuse and of substances used in the pharmacological treatment of drug addiction are presented. In particular, the work has been focused on the analysis of ketamine, naloxone and long-acting opioids (buprenorphine and methadone), oxycodone, disulfiram and bupropion in human plasma and in dried blood spots. The developed methods are based on the use of high performance liquid chromatography (HPLC) coupled to various kinds of detectors (mass spectrometer, coulometric detector, diode array detector). For biological sample pre-treatment different techniques have been exploited, namely solid phase extraction and microextraction by packed sorbent. All the presented methods have been validated according to official guidelines with good results and some of these have been successfully applied to the therapeutic drug monitoring of patients under treatment for drug abuse.
100

Effects of Resources Exploitation on Water Quality: case studies in Salt Water Intrusion and Acid Mine Drainage

Kralj, Martina <1981> 14 May 2012 (has links)
Throughout the world, pressures on water resources are increasing, mainly as a result of human activity. Because of their accessibility, groundwater and surface water are the most used reservoirs. The evaluation of the water quality requires the identification of the interconnections among the water reservoirs, natural landscape features, human activities and aquatic health. This study focuses on the estimation of the water pollution linked to two different environmental issues: salt water intrusion and acid mine drainage related to the exploitation of natural resources. Effects of salt water intrusion occurring in the shallow aquifer north of Ravenna (Italy) was analysed through the study of ion- exchange occurring in the area and its variance throughout the year, applying a depth-specific sampling method. In the study area were identified ion exchange, calcite and dolomite precipitation, and gypsum dissolution and sulphate reduction as the main processes controlling the groundwater composition. High concentrations of arsenic detected only at specific depth indicate its connexion with the organic matter. Acid mine drainage effects related to the tin extraction in the Bolivian Altiplano was studied, on water and sediment matrix. Water contamination results strictly dependent on the seasonal variation, on pH and redox conditions. During the dry season the strong evaporation and scarce water flow lead to low pH values, high concentrations of heavy metals in surface waters and precipitation of secondary minerals along the river, which could be released in oxidizing conditions as demonstrated through the sequential extraction analysis. The increase of the water flow during the wet season lead to an increase of pH values and a decrease in heavy metal concentrations, due to dilution effect and, as e.g. for the iron, to precipitation.

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