Aspergillus fumigatus has long been a focus of research, as it is the cause of the majority of Aspergillus infections. A. fumigatus is widely distributed in the environment and mainly distributed in air as conidia and is the main source of lung infection. A. fumigatus airborne counts were determined monthly during two years from the outside air environment at the University of Manchester campus and compared to total fungal airborne counts. Total fungal airborne counts were strongly seasonally associated with peak counts occurring during the summer months reaching 1,100-1400 CFU m-3and were correlated positively with mean temperature (R2=0.697). In contrast, Aspergillus fumigatus counts were not seasonally associated and gave persistent low levels of between 3-20 CFU m-3and were not correlated with mean temperature. A random selection of Manchester environmental isolates collected over one year along with clinical patient isolates and environmental isolates from the air from Dublin were analysed for genetic diversity using two combined RAPD primers. RAPD analysis revealed that the Manchester environmental isolates represented a genetically diverse population while the clinical isolates were less diverse and formed three major clusters. The Dublin isolates were the least diverse, probably due to their isolation at a single time point. When the pathogenicity of clinical and Dublin isolates were compared with a random selection of Manchester isolates in a wax moth model, as a group, clinical isolates were significantly more pathogenic than environmental isolates. Moreover, when relative pathogenicity of individual isolates was compared, clinical isolates were the most pathogenic, Dublin isolates the least pathogenic and Manchester isolates showed a range of pathogenicities suggesting that selection for the most pathogenic isolates from the environment occurs during patient infection. When the expression of secreted phospholipases in vitro during wax moth larvae of a range of isolates displaying varying degrees of pathogenicity was compared, two phospholipase C genes, AfplcA and AfplcC were strongly correlated with pathogenicity. AfplcC was by far the most highly expressed, however a ΔAfplcC knockout strain did not show attenuated virulence compared to the wild type in wax moth larvae.

Aspergilose é uma das principais causas de mortalidade em aves imunocompetentes e imunodeprimidas. A manifestação clínica aguda da doença é geralmente observada em aves jovens, com episódios de surtos em aviários, enquanto a forma crônica é mais frequentemente observada em aves adultas. A inspeção das carcaças é fundamental para a detecção e monitoramento da prevalência de doenças. Os objetivos do trabalho foram avaliar a ocorrência de aspergilose causada por Aspergillus fumigatus em aves comerciais através do diagnóstico micológico e histopatológico e verificar a possibilidade de associação causal entre os critérios de diagnóstico de aspergilose e condenação por aerossaculite em frangos de corte através de um estudo de casocontrole. O estudo foi realizado com 380 amostras pulmonares. Foram coletados pulmões de frangos condenados (95) por aerossaculite e não condenados (285), diretamente na linha de abate de um frigorífico. Quarenta e seis (12%) amostras de pulmão foram positivas na cultura micológica. Do total de amostras, 177 (46,6%) apresentaram alterações histopatológicas, sendo as mais frequentes pneumonia fibrinoheterofílica necrótica, pneumonia heterofílica e hiperplasia linfóide. Do total de 380 pulmões analisados, 30 (65,2%) apresentaram concomitantemente alterações histopatológicas e isolamento fúngico. A relação entre a presença de lesões histopatológicas e isolamento de A. fumigatus testada por McNemar indicou que houve associação significativa entre a presença de alterações histopatológicas e o isolamento de A. fumigatus. A identificação molecular foi realizada em 44 isolados, sendo todos confirmados como sendo A. fumigatus através dos genes b-tub e rodA. O cultivo micológico e o exame histopatológico aumentam as chances de se detectar alterações pulmonares em aves condenadas pelo Sistema de Inspeção Final do que nas aves normais, sugerindo que tais critérios de diagnóstico são eficazes para aprimorar a avaliação e condenação de aves por aerossaculite. O perfil genético entre os isolados foi variado, mostrando que isolados de aves normais podem ser potencialmente causadores de aspergilose em aves suceptíveis. / Aspergillosis is one of the main causes of mortality in both immunocompetent and immunodepressed birds. The clinical manifestation of acute aspergillosis is usually observed in young birds, often with episodes of outbreaks in poultry farms, whereas chronic aspergillosis is more frequently observed in adult birds. The inspection of carcasses is fundamental for the detection of diseases and for monitoring their prevalence. The objectives of this study were to evaluate the occurrence of aspergillosis caused by Aspergillus fumigatus in poultry through mycological and histopathological diagnosis and to verify the possibility of a causal association between the criteria for aspergillosis diagnosis and carcass condemnation due to airsacculitis in broilers through a case-control study. The study was made with 380 lung samples. Lungs were collected from condemned (95) and not condemned (285) broilers due to airsacculitis, directly from the slaughter line of a slaughterhouse. Forty-six (12%) lung samples were positives in mycological culture. From the total samples, 177 (46.6%) showed histopathological alterations, the most frequent being necrotic, fibrinous, heterophilic pneumonia, heterophilic pneumonia and lymphoid hyperplasia. Of the 380 lungs analyzed, 30 (65.2%) showed histopathological alterations and isolation of fungi. The relation between the presence of histopathological lesions and the isolation of A. fumigatus, as observed with the McNemar test, indicated the significant association between the presence of histopathological alterations and the isolation of A. fumigatus.The molecular identification was made in 44 isolates, and all of them were confirmed to be A. fumigatus through analysis of the b-tub and rodA. The mycological cultivation and the histopathological test increase the chances of detecting pulmonary alterations in birds condemned by the Final Inspection System than in normal birds, suggesting that such diagnostic criteria are efficient to improve the assessment and condemnation of birds affected by airsacculitis. There were different genetic profiles among the isolates, which shows that isolates obtained from normal birds can potentially cause aspergillosis in those susceptible.

The master‘s thesis is focused on the study of biodegradation of polyhydroxyalkanoates, namely polymer polyhydroxybutyrate. The first part of the thesis is focused on the study of biodegradation of polyhydroxybutyrate in the form of crystalline granules of PHB and PHB films using selected species of microorganisms from bacteria, yeasts and fungi. As a representative of bacteria was chosen microorganism Delftia acidorovans, as yeast was selected Aureobasidium pullulans and Aspergillus fumigatus as fungi. PHB depolymerase activity was measured employing turbidemtiric method with suspension of PHB granules as substrate. The results showed that D. acidorovans can partially degrade PHB. On the contrary A. pullulans cannot effectively degrade PHB. The most significant degradation ability revealed A. fumigatus, which was able to degrade PHB completely. Extracellular enzymes excreted by these microorganisms when cultivated on PHB materials as sole carbon sources were analyzed by SDS-PAGE. The second part of the thesis deals with the biodegradation of PHB in the form of PHB film, PHB hardened foil and PHB Nanoul fabric using standard composting test. Semi-solid cultivation showed positive results. In the interval from 14 days to two months were all forms of the PHB completely biodegraded. With semi-solid cultivation was also studied biodegradation rate of the polyurethane elastomeric films which were modified by partial replacement of polyester polyol by PHB. The test samples were prepared using PHB from Sigma and the PHB samples prepared at the Faculty of chemistry VUT. Samples with different concentrations of the dispersed PHB (1 %, 5 % and 10 %) in the polyurethane were also object of the study. At the end of the cultivation (after 2 months) were measured mechanical properties in tension of the material, then efficiency of biodegradation by gravimetric analysis and modification of the material surface by microscopic analysis.

Publicación a texto completo no autorizada por el autor / Investiga la bioadsorcion del plomo (II) usando como material bioadsorbente las biomasas fúngicas Aspergillus niger y Aspergillus fumigatus aislados del pueblo joven Puerto Nuevo-callao. El material bioadsorbente se obtuvo de las muestras tomadas de la zona contaminada del pueblo joven Puerto Nuevo-Callao. El material tratado fue secado en una estufa a la temperatura de 80 °C por 2 horas. Se determinó la bioadsorcion de plomo (II) en solución por las biomasas celular de dos hongos por el método instrumental de espectroscopia de absorción atómica. Los experimentos sobre el efecto del pH en el proceso de bioadsorción de Pb (II) por las biomasas fúngicas demostraron que el pH óptimo es 5.0; así como el experimento del efecto de la temperatura optima por las biomasas fúngicas demostraron una temperatura optima de 25°C para la biomasa fúngicas; la concentración del plomo (II) que presenta la mejor bioadsorcion es a 1000ppm. Del estudio de la cinética del proceso de bioadsorción, se determinó que la biomasa de Aspergillus niger 98% fue más eficiente en la remoción del plomo (II) que el Aspergillus fumigatus 96%. El equilibrio se alcanzó a las 100 minutos del inicio del proceso de bioadsorción logrando un porcentaje de remoción de Plomo (II) para Aspergillus niger 98% y para Aspergillus fumigatus 96%. Se concluye que las biomasas fúngicas remueven eficientemente plomo (II) en solución y pueden utilizarse para descontaminar nichos acuáticos contaminados con este metal. / Tesis

Despite the significant progress in medicine, infectious diseases are life-threatening thanks to an increasing number of multiresistant strains of microorganisms and late detection of pathological agents. An opportunistic fungus Aspergillus fumigatus cause respiratory system diseases called aspergillosis. The invasive pulmonary aspergillosis affects immunocompromised patients after inhalation of ubiquitous conidia of A. fumigatus and results in 450,000 deaths per year. The biofilm formation in the infected tissue protects A. fumigatus against antimicrobial drugs. Late therapy may not be effective. Infection of immunocompromised patients and biofilm formation is characteristic also for gram negative bacteria Pseudomonas aeruginosa, which is due to the production of many factors of virulence and multiresistance a dreaded opportunistic pathogen. Scanning electron microscopy (SEM) provides detail information about morphology of microorganisms with the resolution in range of tens of nanometers that allows to observe microorganisms in the infected tissue and its pathological changes. Mass spectrometry allows to detect infection and its course based on identification of characteristic microbial molecules. The aim of this study was to optimize sample preparation of tissues infected with A. fumigatus or P....

No description available.

Aspergillus fumigatus is a globally present opportunistic fungal pathogen that plays a key role in degrading organic matter. A. fumigatus can cause a vast array of diseases, collectively known as aspergilloses. The most serious of these is invasive aspergillosis, that has a mortality rate of 30 to 95% with treatment. Recent studies have indicated that the global A. fumigatus population consists of multiple divergent genetic clusters that are broadly distributed geographically. However, most of the previously analyzed samples have come from continental Eurasia and the Americas where the effects of historical or contemporary gene flow is difficult to distinguish. My thesis project, therefore, focused on analyzing the genetic diversity of the Auckland, New Zealand A. fumigatus population, as it is geographic distant from all previously analyzed populations. Here, we obtained 104 A. fumigatus isolates from Auckland and compared the genotypes of these isolates to population data obtained from nine other countries from Europe, Africa, North America, and Asia. The goal was to analyze the potential effects of historical differentiation and gene flow within this population. We determined that the Auckland population had a low, non-significant level of differentiation compared to most previously surveyed global populations. However, the Auckland population also contained unique genetic elements not present within populations from other geographic regions. Though the hypothesis of random recombination was rejected, we found abundant evidence for phylogenetic incompatibility and recombination within the Auckland A. fumigatus population. Lastly, we identified two triazole resistant strains within the Auckland population, with one carrying the common TR34/L98H cyp51A mutation. Our results suggest that contemporary gene flow, likely due to anthropogenic factors, is a major force shaping the New Zealand A. fumigatus population. These results contribute to our understanding of the high levels of gene flow observed within and among many geographic populations of A. fumigatus. / Thesis / Master of Science (MSc) / Aspergillus fumigatus is a globally distributed fungal mold capable of causing serious diseases in individuals with weakened immune systems or lung damage. In the environment, A. fumigatus lives in the soil where it degrades organic matter and contributes to the cycling of nitrogen and carbon across the planet. Due to the airborne nature of its spores, people inhale this fungus daily, and those at risk may develop disease. These diseases, collectively known as aspergilloses, can result in long term chronic illnesses, and in the case of invasive aspergillosis, the death rate can be as high as 95%, even with treatment. Medical treatment of aspergilloses involves the use of antifungal drugs. However, some A. fumigatus strains have developed resistance. I am interested in the patterns of global genetic diversity of A. fumigatus populations. For my MSc thesis, I investigated the A. fumigatus population within Auckland, New Zealand, as it is both geographically isolated and distant from other previously surveyed populations. Our data illustrated that the New Zealand population contains pockets of unique diversity as well as high levels of similarity to the previously surveyed populations within Europe. My results suggest that human influences, likely due to travel and trade, have played a large role in shaping the genetic diversity of the A. fumigatus population from Auckland, New Zealand.

Aspergillus fumigatus is an opportunistic fungal pathogen responsible for invasive aspergillosis in immunocompromised individuals. Current detection and treatment strategies for invasive aspergillosis, as well as other invasive fungal infections, are poor. Iron has been shown to be essential for Aspergillus fumigatus virulence. Furthermore, mechanisms in the iron regulatory network are believed to be potential drug targets since iron management in fungi is vastly different from that in mammals and other eukaryotes. Therefore a better understanding of iron homeostasis in Aspergillus fumigatus could help improve drug therapies for invasive aspergillosis. In this research a discrete model of iron uptake, storage and utilization in Aspergillus fumigatus with particular focus on siderophore-mediated iron acquisition is constructed. The model predicts oscillations in gene expression as the fungus adapts to a switch from an iron depleted to an iron replete environment. The model is validated via in vitro experiments. / Master of Science

N-hydroxylating monooxygenases (NMO) are members the class B flavoprotein monooxygenases. They catalyze the N-hydroxylation of lysine and ornithine and play and essential role in the biosynthesis of hydroxamate containing siderophores. Siderophores are high affinity iron-chelators composed of catechol and hydroxamate functional groups that are synthesized and secreted by several microorganisms and plants. It has been showed that many NMOs are essential for virulence in many opportunistic pathogens such as Aspergillus fumigatus and Pseudomonas aeruginosa. The focus of my research is on the N-hydroxylating enzymes: Siderophore A (SidA) from Aspergillus fumigatus and Amycolatoposis alba monooxygenase (AMO). One of my projects is focusing on identifying inhibitors of SidA that will ultimately block the siderophore biosynthesis in A. fumigatus. Out of 973 compounds screened using an activity high-throughput assays two compounds were identified. These were, wortmannin a steroid metabolite and ebselen a benzoselenazole as SidA inhibitors with IC50 values of 369 µM and 11 µM respectively. A second part of this works investigates the hydroxamate formation of the siderophore albachelin in Amycolatoposis alba with the purpose of better understanding this class of enzymes and their catalytic mechanism. The enzyme was purified and characterized in its holo (FAD-bound) and apo (unbound) forms. Pre-steady and steady state kinetics shows that the two forms have different coenzyme preference; apo-AMO prefers NADH while holo-AMO has a higher affinity to NADPH. / Master of Science in Life Sciences

No description available.