La bactérie Gram négative Pseudomonas aeruginosa produit un grand nombre d’exoprotéines remplissant de multiples fonctions. Pour rejoindre la surface ou le milieu extracellulaire, ces exoprotéines doivent franchir successivement la membrane interne, le périplasme et la membrane externe. De multiples systèmes de sécrétion ont été mis en place par P.aeruginosa pour réaliser ces différentes étapes. Ainsi, les exoprotéines peuvent traverser l’enveloppe par le système le plus approprié à leur transport. Un de ces systèmes, le système de sécrétion de type II (T2SS) est présent en deux exemplaires. Ces deux T2SS, complets et fonctionnels ont été appelés Xcp (« extracellular deficient protein ») et Hxc (« Homologue toXcp »). Si les éléments constitutifs des T2SSs sont bien identifiés, leur assemblage au sein de l’enveloppe ainsi que leur mode de sécrétion sont très peu documentés. Le modèle communément admis suggère cependant l’existence d’une plateforme de membrane interne, d’un composant demembrane externe et d’un pseudopilus, qui va tel un piston, pousser les substrats au travers du pore formé par l’unique composant de membrane externe, la sécrétine. Les sécrétines formentdans la membrane externe de larges pores homo-multimériques de 12 à 14 monomères.L’adressage et l’assemblage de telles structures nécessitent en général l’implication d’une petite lipoprotéine, connue sous le nom de pilotine. A ce jour, aucune protéine de ce type n’est connue pour assister les multiples sécrétines répertoriées chez P. aeruginosa dans leur adressage à lamembrane externe. Ce travail de thèse à principalement porté sur le second T2SS de P.aeruginosa, le système Hxc. Nous avons en particulier démontré que la sécrétine du système Hxc,HxcQ ne dépendait d’aucune pilotine pour son adressage à la membrane externe et que cette sécrétine était une lipoprotéine dont l’ancre lipidique N-terminale jouait le rôle de pilotine. / The Gram negative bacteria Pseudomonas aeruginosa produces a large number of exoproteins that have multiple functions. To reach the cell surface or the extracellular medium, an exoprotein must successively cross the inner membrane, the periplasm and the outer membrane.P. aeruginosa has developed a number of secretion systems that carry out these different steps.Thus, a specific exoprotein will cross the envelope using the most suitable secretion system. Oneof these systems, the type II secretion system (T2SS), is present in two copies on the P.aeruginosa genome. Both T2SS are complete and functional, and have been named Xcp(« extracellular deficient protein ») and Hxc (« Homologue to Xcp »). While the different components that make up each T2SS have been clearly identified, their assembly in the envelopeand their mode of secretion are poorly documented. Nevertheless, the commonly acceptedworking model suggests the existence of an inner membrane platform, a component in the outer membrane, and a pseudopilus which, acting as a piston, pushes the substrate through a pore formed by the sole component of the outer membrane, the secretin. Secretins form large homomultimeric pores (12 to 14 monomers) in the outer membrane. Targeting and assembly ofsuch structures requires the involvement of a small lipoprotein known as pilotin. To date, no suchprotein is known to assist the targeting of P. aeruginosa secretins to the outer membrane. This thesis work has mainly focused on the second T2SS of P. aeruginosa, the Hxc system. One of ourmajor findings is that the outer membrane targeting of the Hxc secretin, HxcQ, does not dependon any pilotin, but that instead HxcQ is a lipoprotein with a lipid anchor that acts as a pilotin.

The applicability of an isotopically labelled assay system to determine the lipase production in Pseudomonas aeruginosa was evaluated. Supernatant from cultures of Pseudomonas aeruginosa grown in a medium containing olive oil was incubated with a substrate containing labelled trioleate. Fatty acids were isolated by means of a liquid-liquid partition system. Enzyme activity was determined by measuring the amounts of free fatty acid by liquid scintillation counting. Findings indicate that the isotopicallylabelled, liquid-liquid partitioning assay is reliable, sensitive and adaptable to rapid assay conditions. It was also determined that different strains of Pseudomonas aeruginosa produce varying amounts of lipase. Partial purification of supernatant by gel filtration produced two protein peaks showing enzymatic activity.

Cyanobacteria are ancient prokaryotic organisms capable of performing oxygenic photosynthesis. An increase in the temporal and spatial distribution of cyanobacteria blooms worldwide has drawn considerable research attention in recent decades because of the health risks cyanobacteria pose to humans and wildlife through the production of cyanotoxins, interference with recreation, and ecosystem changes. A variety of hypotheses have sought to explain the increasing frequency and severity of cyanobacteria blooms around the world, with the relationship between cyanobacteria abundance and eutrophication receiving considerable attention. While the impacts of phosphorus concentration on cyanobacteria success are relatively well-studied, less is known about how nutrient stoichiometry and nitrogen uptake kinetics of different species contribute to cyanobacteria dominance. The underlying mechanism for the impacts of nitrogen to phosphorus (N:P) ratio and nitrogen form on cyanobacteria involves internal cycling of nitrogen within lakes and aspects of cyanobacteria cell physiology. The primary objective of this study was to assess the impacts of N:P ratios and nitrogen form on the growth of Microcystis aeruginosa and Anabaena flos-aquae in both axenic cultures and natural phytoplankton assemblages from Missisquoi Bay, Lake Champlain. A second objective was to determine whether treatment condition affected the production of the cyanotoxin microcystin. A final objective was to document the presence of benthic ammonium in Missisquoi Bay and the vertical migration of cyanobacteria throughout the water column in the bay, to provide evidence in support of the underlying mechanisms that might provide advantages to cyanobacteria in the bay. In laboratory culture experiments with M. aeruginosa and A. flos-aquae alone and in a mixed community, N:P ratios were varied between 5, 15, 30 and 45:1, and nitrogen was supplied as both nitrate and ammonium at each ratio. Triplicate samples were preserved after one, three and six days for cell enumeration using the standard Ütermohl method. Differences in density between initial and later times were used as an estimate of growth. Microcystin concentration was measured with the ELISA method. Weekly field sampling was conducted in the summer of 2006 in Missisquoi Bay to measure benthic nitrogen concentrations. Nocturnal sampling at varied depths in the bay was used to explore the vertical migration of cyanobacteria throughout the water column. There were weak associations between ammonium-nitrogen and M. aeruginosa growth and nitrate-nitrogen and A. flos-aquae growth, while the effects of N:P ratio on growth was highly variable across time and treatment condition. Ammonium-nitrogen was documented in the benthic water of Missisquoi Bay throughout the growing season, and M. aeruginosa dominated the vertical migration of cyanobacteria throughout the water column. The lack of clear trends visible within the data from laboratory experiments can be in part attributed to high variability of cell density within treatment conditions and the limitations of the methodology used for cell enumeration. Taken together these data suggest that the distribution of nitrogen within an aquatic system and the ability of M. aeruginosa to vertically migrate may contribute to the M. aeruginosa dominance of the summer phytoplankton community.

Chronic infection with P. aeruginosa is expected in patients with cystic fibrosis (CF), but the ability to delay, prevent, or better manage infection with multiply-resistant P. aeruginosa (MRPA) can potentially increase quality of life and extend survival. The Texas Children’s Hospital CF Care Center has identified an endemic MRPA strain (dominant clone), and this study aimed to identify risk factors for acquisition of the clone as well as determine differences in patient outcome associated with subsequent infection with the clone. The study included 71 patients with CF with documented MRPA infection. Designation of patients as members of the dominant clone or a non-dominant clone group was based on molecular typing by rep-PCR of MRPA isolates from respiratory cultures. Patient data was collected from Port CF, the national patient registry of the CF Foundation. Patient demographic information and clinical parameters prior to MRPA infection were analyzed by logistic regression as potential risk factors. Differences in patient outcome including change in BMI, change in FEV1, and hospitalization rate were evaluated by MANOVA. Recent hospitalization (< 90 days) was a statistically significant (p = 0.035) risk factor for acquisition of the dominant clone. Patients hospitalized < 90 days prior to MRPA diagnosis were four times more likely to be infected with the dominant clone, and patients hospitalized 91-180 days prior were almost three times more likely. Increased hospitalization rates were seen in the dominant clone group both pre- (11 more days/year) and post-infection (14 more days/year) as compared to the non-dominant clone group. Patients infected with the endemic strain exhibited poorer outcomes in terms of nutritional status (3.73% decrease/year in BMI %ile) and lung function (3.7% decrease/year in FEV1 %ile). Significant overlap in hospitalization episodes of patients known to be infected with the dominant clone and patients subsequently infected with the dominant clone was observed. Recent hospitalization was a significant risk factor for infection with the dominant MRPA clone, and following infection, patients infected with the endemic strain exhibited declines in nutritional status and lung function and increased hospitalization rates. The results suggest potentially increased virulence and transmissibility of the endemic MRPA strain.

Alginate overproduction by Pseudomonas aeruginosa, which causes a mucoid phenotype, is a major virulence factor associated with chronic pulmonary infections in cystic fibrosis patients. Expression of the algD operon for alginate biosynthesis requires three major regulators in association with the ECF sigma factor, σ22, in mucoid strains that are typically defective in anti-sigma factor, MucA. One such algD regulator is AlgB, a member of the NtrC family of two-component systems, which typically utilize σ54. However, neither σ54 nor the cognate sensor kinase (KinB) of AlgB are required for algD expression in such mucoid strains. I hypothesized that KinB-phosphorylated AlgB must play some role in gene regulation, and so I sought to construct a constitutively active AlgB that simulated kinase-phosphorylation. I took a predictive approach and genetically introduced substitutions in AlgB that had been shown to activate DctD, a close homologue of AlgB in Rhizobium (52). When one such substitution, AlgBE125K, was transferred to a nonmucoid P. aeruginosa PAO ΔalgB-kinB (JK159) strain, alginate overproduction was observed. Interestingly, introduction of an algT mutation to remove σ22 did not block alginate production induced by AlgBE125K; although, it did stimulate the production of alginate in the presence of AlgBwt in trans to similar levels induced by the constitutive mutant. In contrast, introduction of an rpoN mutation showed that alginate production mediated by AlgBwt and AlgBE125K was σ54 dependent. The increase in expression of alginate by AlgBwt in the presence of σ54 and the absence of σ22 suggested a competition between the sigma factors for binding to PalgD. Biochemical assays were conducted to assess the constitutive property of AlgBE125K. For the ATPase assay, an equivalent amount of ATP hydrolysis was observed between the mutant and the wild type AlgB proteins. Slight differences seen for the EMSA data suggested possible higher order complex formation for AlgBE125K compared to AlgBwt. Collectively, these results suggested that in wild-type (MucA+) P. aeruginosa, expression of the algD operon is dependent on the phosphorylation of AlgB by KinB in a typical two-component fashion that is triggered by some as yet unknown environmental stimulus.

This thesis focuses on solution antimicrobial effectiveness for copolyoxetanes with quaternary ammonium and PEG-like side chains. Ring opening copolymerization of 3-((4-bromobutoxy)methyl)-3-methyloxetane (BBOx) and 3-((2-(2-methoxyethoxy) ethoxy) methyl)-3-methyloxetane (ME2Ox) yielded random copolymers with 14-100 (m) mole% BBOx designated P[(BBOx-m)(ME2Ox)]. Reaction of P[(BBOx-m)(ME2Ox)] with dodecyl dimethylamine gave the corresponding quaternary P[(C12-m)(ME2Ox)] polycation salts, designated C12-m. Mole ratios and molecular weights were obtained from 1H-NMR and end group analysis. Differential scanning calorimetry (DSC) studies showed Tg’s between 69 and -34 °C. Minimum inhibitory concentrations (MIC) against Staphylococcus aureus, Escherichia coli and Pseudomonas aeruginosa showed MIC decreasing with increasing C12 mole% reaching a minimum between C12-43 and C12-60. C12-43 had the lowest MIC for all strains. At 5× MIC (challenge:108 cfu/ml), C12 43 kills ≥ 99% of the tested strains within 1 hr. C12-m copolyoxetane cytotoxicity toward human red blood cells, HFF (Human Foreskin Fibroblast) and HDF (Human Dermal Fibroblast) was low, indicating good prospects for biocompatibility. Cx-m copolyoxetane antimicrobial efficacy, hemolytic activity and cytotoxicity were further explored by changing quaternary alkyl chain length. Copolyoxetanes are represented as Cx-50, where 50 is the mole percent quaternary repeat units and ‘x’ is quaternary alkyl chain length (2 to 16 carbons). Reaction of P[(BBOx-m)(ME2Ox)] with a series of tertiary amines yielded the desired quaternary ammonium segment. DSC studies showed Tg’s between -40 °C and -60 °C and melting endotherms for C14-50 and C16-50. A systematic dependence of alkyl chain length on MIC was found with C8-50 being the most effective antimicrobial. Kill kinetics for C8-50 (5× MIC, challenge: 108 cfu/ml) effected >99% kill in 1 hour for S. aureus (7 log reduction). C8-50 efficacy on biomass and cell viability of P. aeruginosa biofilms was investigated. Crystal violet (CV) staining assays demonstrate that C8-50 had no effect on adhesion of already established P. aeruginosa biofilms, but reduced biofilm formation by killing cells prior to attachment. For anti-adhesion assays, noticeable reduction in biofilm mass occurred at concentrations greater than 2× MIC. Viability studies show a substantial log reduction of 2.1 at MIC. The low cytotoxicity of Cx-m copolyoxetanes coupled with low MICs and favorable biofilm results indicate good prospects for therapeutic applications.

Two component systems (TCSs) are regulatory pathways in bacteria and lower eukaryotes that integrate multiple stimuli and bring about appropriate responses to promote adaptation of the bacteria to their niches. They are commonly insulated from cross-talk and form discrete regulatory systems where the sensor histidine kinase (SK) and the response regulator (RR) share high fidelity for one another. The GacS network controls the switch between acute and chronic virulence of P. aeruginosa. The network is unusual in having a 'core' SK, GacS, which is modulated directly by one other SK, RetS. Here the complex relationship between GacS and RetS is dissected to reveal three distinct mechanisms by which they interact. Two of these mechanisms involve the dephosphorylation of GacS-P by RetS and it is these mechanisms that are important in vivo for the regulation of biofilm formation, rsmY and rsmZ expression, swarming, and virulence in both Galleria mellonella and an acute model of infection in mice. This study reveals an unprecedented level of complexity in the ability of RetS to interact with GacS and suggests that RetS has a number of mechanisms by which it can downregulate the GacS network output. Furthermore, the interactions of additional SKs that have previously been linked to the GacS network were investigated. Here I demonstrate that many of these kinases can interact with one another but that RetS remained the only kinase tested that could directly interact with GacS. The interactions observed between kinases could be either stimulatory, having a synergistic impact on phosphorylation levels, or inhibitory. I also show that kinase-kinase interactions allow for the regulation of phosphorylation of downstream proteins. Finally, we searched for additional SKs that may be able to interact with the GacS network. Here I identify three new kinases, which show differing interactions with the kinases of the GacS network. The discovery of additional SKs in the GacS network indicates that the network is likely to respond to a far greater number of different signals than previously realised as it decides between acute and chronic virulence.

The aim of this diploma thesis is to explore the coagulation phase in water treatment process from two perspectives, the removal of cyanotoxin microcystin and the responses of ecotoxicological indicator species Daphnia magna to different concentration of this toxin, contained in a sample of cyanobacterial water bloom, which was extracted from a dam and was dominated by cyanobacteria Microcystis aeruginosa. The sample was administered in three environmentally relevant concentrations to 6 clones of Daphnia magna, 3 of which had previous experience with M. aeruginosa. Coagulation process was performed under optimal conditions: pH = 6.36; KNK4,5 = 0.26 mmol.l-1 ; Fe = 0.162 mg.l-1 ; DOC = 2.83 mg.l-1 using 10 ml of 0.125M NaHCO3 in two litres of ultrapure water. Individual forms of microcystin were detected in this ratio: 31.6 % MC-LR, 53.6 % MC-RR and 14.8 % MC-YR. The study has shown that under these conditions coagulation does not remove microcystin, e.g. the efficiency of the process is zero. In ecotoxicological study, with growing concentration of cyanobacterial mixture the negative impact on Daphnia magna increased. We have found interclonal variability in responses of D. magna, however, the previous experience with M. aeruginosa had no effect. With growing concentration of cyanobacterial water...

Cystic fibrosis (CF) is an autosomal recessive disease caused by mutations in the CFTR gene (CF transmembrane conductance regulator). These mutations result in absent or defective CFTR chloride channel function. The susceptibility to bacterial respiratory infections due to the accumulation of thickened mucus and altered glycosylation in lungs is typical for this disease. Bacteria Pseudomonas aeruginosa (PA) is a major cause of these infections. Among other virulent factors, the pathogenicity of these bacteria is caused by fucose-specific PA-IIL lectin which plays a role as an adhesin. The effect of anti-PA-IIL egg yolk antibodies and multivalent fucose-based PA-IIL inhibitors on PA adherence to lung epithelial cells was studied in this work. Chicken antibodies were isolated from egg yolks before and after immunization with antigen PA-IIL. Specific anti-PA-IIL antibodies were obtained by affinity chromatography using a column with an immobilized PA-IIL. Reactivity of IgY was verified by ELISA. The presence of PA-IIL in the bacterial culture of Pseudomonas aeruginosa (PAK, ST 1763) and the ability of antibodies to recognize this bacterial lectin were verified by Western blotting followed by immunodetection. Appropriate culture conditions have also been found for the expression of this lectin. The...

Reversible protein phosphorylation is considered the universal language for intracellular communication in all living organisms. This process, catalysed by protein kinases and phosphatases, enables the translation of extracellular signals into cellular responses and also allows for adaptation to a constantly changing environment. In recent years, a number of bacterial eukaryotic-type Ser/Thr protein kinases and phosphatases have been identified. However, their precise functions and substrates are not yet well defined. The genome of opportunistic human pathogen Pseudomonas aeruginosa contains at least five genes encoding putative eukaryotic-type Ser/Thr protein kinases and phosphatases. In the first part of this study, we have attempted to establish the role of Ser/Thr protein kinase PpkA and phosphatase PppA, which belong to type VI secretion system H1-T6SS. Double mutant strain ∆pppA-ppkA was prepared in P. aeruginosa PAO1 background. Phenotypic studies revealed that the mutant grew slower than the wild-type strain in minimal media and exhibited reduced secretion of pigment pyocyanin. In addition, the mutant had altered sensitivity to oxidative and hyperosmotic stress conditions. Consequently, mutant cells had an impaired ability to survive in murine macrophages and an attenuated virulence in the...