Kapsaicinoider är ämnen som finns i chilifrukterna och har på senaste tiden fått intresse som läkemedel på grund av sina analgetiska, anti-inflammatoriska och anti-cancer egenskaper. Ett nytt tillvägagångssätt att producera kapsaicinoider kan vara syntesen i rekombinant Saccharomyces cerevisiae med hjälp av metabolisk engineering och rekombinant DNA-tekniker. Gener från Capsicum chinensis, som kodar för enzymerna capsaicinoid-syntas (CS) och acyl-CoA-syntas (ACS), integrerades i S. cerevisiae i tidigare projekt. Den kända laboratoriesträngen CEN.PK modifierades med plasmidtransformation och för vildtyp-stammen ERF 5273 användes den nya CRISPR/Cas9-tekniken. Syftet med detta projekt är att ytterligare karakterisera och jämföra dessa tidigare konstruerade stammar angående deras förmåga att producera nonivamid eller andra jästspecifika kapsaicinoider. Vidare undersöks huruvida kapsaicinoider utsöndras i odlings-medium eller om de ackumuleras intracellulärt. Stammarna odlades i en bioreaktor i lite laboratorieskala. Som odlingsmedium används ett definierat medium med eller utan tillsatser. Odlings-medium kompletterades med vanillyl-amin och nonanoic acid som precursor. För att identifiera de kapsaicinoid-producerande stammarna extraherades supernatanten och cellpelleten och analyserades kromatografisk med HPLC. Resultaten från denna studie visade att jäststammarna, som innehöll båda generna (ACS + CS), sannolikt producerade nonivamid om de odlades i kompletterat medium. Vidare observerades bildning av nonivamid som ackumulerades i själva cellen. Möjligtvis producerades också jästspecifika kapsaicinoider, men topphöjden är nästan inte mätbar. Därför måste dessa resultat bekräftas ytterligare. Framtida arbeten behövs för att säkerställa och förbättra produktionen av kapsaicinoider. Keywords: acyl-CoA syntas, kapsaicinoider, kapsaicinoid syntas, metabolisk engineering, Saccharomyces cerevisiae, nonivamide / Capsaicinoids are compounds found in chili plants and have recently gained interest as pharmaceuticals due to their analgesic, anti-inflammatory and anti-cancer properties. A novel approach producing capsaicinoids could be synthesis in recombinant Saccharomyces cerevisiae with help of metabolic engineering. Genes from Capsicum chinensis, encoding the enzymes capsaicinoid synthase (CS) and acyl-CoA synthase (ACS), were previously inserted into S. cerevisiae. The known laboratory stain CEN.PK was modified with plasmid transformation and the novel CRISPR/Cas9 technology was used for the wild type strain ERF 5273. The aim of this project is to further characterize and compare these previously constructed strains concerning their ability to produce nonivamide or yeast specific capsaicinoids. Furthermore, it is examined whether capsaicinoids are excreted into the broth or accumulated intracellularly. Four different strains were cultivated in bench-scale bioreactors using medium supplemented with or without different precursors (vanillylamine and nonanoic acid). Culture broth supernatants and cell pellets were extracted and analyzed by HPLC in order to identify the capsaicinoid-producing strains. The results from this study revealed that the yeast strains harbouring both genes (ACS+CS) produced most likely nonivamide if they were cultivated in media supplemented with both precursors. Nonivamide formation was equally observed in broth supernatant and cell pellet. Additionally it was shown that yeast specific capsaicinoid production occured, althoug the peak height was close to the limit of detection and these results have to be confirmed further. Future work needs to be done in order to ensure and improve capsaicinoid production. Keywords: acyl-CoA synthase, capsaicinoids, capsaicinoid synthase, metabolic engineering, Saccharomyces cerevisiae, nonivamide.

No description available.

La maladie d’Alzheimer (MA) est un problème majeur de santé publique. Elle se traduit par des atteintes de la mémoire reposant sur des dysfonctionnements synaptiques induits par les oligomères de peptide ß-amyloïde (Aß). Ceux-ci activent la phospholipase A2 cytosolique (cPLA2) qui libère l’acide arachidonique (ARA) des phospholipides (PL) membranaires neuronaux. L’acyl-CoA synthétase 4 (ACSL4) peut limiter cette libération en favorisant la réincorporation d’ARA dans les PL. Dans l’alimentation occidentale, il constitue une part croissante des apports lipidiques. Contrairement à l’acide docosahexaénoïque (DHA), l’influence de l’ARA dans la MA a été peu étudiée. C’est pourquoi nous avons étudié la mobilisation de l’ARA et son effet sur la sensibilité au peptide Aß. Nous avons montré dans un premier temps qu’un apport alimentaire en ARA affecte la mémoire à court terme et sensibilise les capacités d’apprentissage au peptide Aß. Ces altérations sont associées à des diminutions d’expression des récepteurs AMPA et de l’ACSL4, une prolifération astrocytaire et une incorporation accrue en ARA dans les espèces de PL phosphatidylsérine et phosphatidyléthanolamine (PE). D’autre part, la différenciation des cellules HT22 nous a permis de montrer que l’ACSL4 intervient dans l’incorporation de l’ARA et dans l’équilibre ARA/DHA, notamment dans les espèces PE. Cela indique qu’un excès en ARA dans l’alimentation peut constituer un facteur d’aggravation de la MA et que les enzymes assurant sa mobilisation, comme la cPLA2 et l’ACSL4, peuvent moduler ce risque. La caractérisation de leurs niveaux d’expression pourrait permettre de définir des groupes d’individus à risque vis-à-vis de la MA / Alzheimer’s disease (AD) is a major public health problem. This disease is characterized by memory impairments which are caused by synaptic dysfunctions induced by the oligomers of amyloid-ß peptide (Aß). These activate the cytosolic phospholipase A2 (cPLA2) which releases arachidonic acid (ARA) from neuronal membrane phospholipids (PL) whereas acyl-CoA synthetase 4 (ACSL4) potentially counteracts this release by favoring ARA reincorporation into PL. Western diets contain growing amount of ARA. Contrary to docosahexaenoic acid (DHA), a few studies were devoted to the influence of ARA in AD. This is why we decided to study the mobilization of ARA and its effects on the sensitivity to Aß oligomers. First we showed that dietary ARA reduces short-term memory abilities and increases the deleterious effects of Aß on learning abilities. These alterations of cognitive abilities are associated to reductions of expression levels of AMPA receptors and ACSL4, an astrocyte proliferation, and greater incorporation of ARA in PL species phosphatidylethanolamine (PE) and phosphatidylserine. Secondly, we used differentiated HT22 to show that ACSL4 modulate ARA incorporation and ARA / DHA balance in the PE species. These results indicate that excessive dietary intake of ARA may be a worsening factor in AD and the enzymes regulating ARA mobilization, such as cPLA2 and ACSL4, can modulate this risk. The characterization of their enzymatic activities could allow the identification of groups of individuals at AD risk.

Dietas hiperlipídicas e a esteatose hepática são condições extremamente prevalentes. Trabalhos anteriores mostraram que a esteatose está associada a um aumento na geração de espécies reativas de oxigênio (ERO), e que isso pode mediar danos no fígado. Neste trabalho nós investigamos os possíveis mecanismos que desencadeiam os aumentos nas taxas de geração de ERO por meio da administração de dietas hiperlipídicas. Nós descobrimos que mitocôndrias de animais sujeitos a dietas hiperlipídicas não apresentaram diferenças significativas quanto a capacidade respiratória máxima e acoplamento, mas eram capazes de gerar mais ERO especificamente quando usados substratos do metabolismo de ácidos graxos. Além disso, foi observado que muitas isoformas de acil-CoA desidrogenases estavam mais expressas nos fígados de animais alimentados pela dieta hiperlipídica. No entanto, quando realizados ensaios de atividade enzimática apenas a acil CoA desidrogenase de cadeia longa (VLCAD) foi mais ativa. Estudos conduzidos com mitocôndrias permeabilizadas e expostas a grupos acil-CoA de diferentes tamanhos sugerem que a VLCAD pode ser uma fonte da produção aumentada de ERO em animais submetidos a dietas hiperlipídicas. Esta produção foi estimulada pela ausência de NAD+. Concluindo, nossos estudos descobriram uma nova fonte importante na geração de ERO estimulada por dietas hiperlipídicas, a VLCAD / High fat diets and accompanying hepatic steatosis are highly prevalent conditions. Previous work has shown that steatosis occurs concomitantly with enhanced reactive oxygen species (ROS) generation, which may mediate further liver damage. Here we investigated mechanisms leading to enhanced ROS generation following high fat diets (HFD). We found that mitochondria from HFD livers present no differences in maximal respiratory rates and coupling, but generate more ROS specifically when fatty acids are used as substrates. Indeed, many acyl-CoA dehydrogenase isoforms were found to be more highly expressed in HFD livers, although only the very long chain acyl-CoA dehydrogenase (VLCAD) was more functionally active. Studies conducted with permeabilized mitochondria and different chain length acyl-CoA derivatives suggest that VLCAD is a source of enhanced ROS production in mitochondria from HFD animals. This production is stimulated by the lack of NAD+. Overall, our studies uncover VLCAD as a novel, diet-sensitive, source of mitochondrial ROS

Submitted by Marcos Anselmo (marcos.anselmo@unipampa.edu.br) on 2017-06-05T14:23:17Z No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) MARIANE TRINDADE DE PAULA.pdf: 5612709 bytes, checksum: a2f34c2760ece6fed258912c3f6d2442 (MD5) / Approved for entry into archive by Marcos Anselmo (marcos.anselmo@unipampa.edu.br) on 2017-06-05T14:23:44Z (GMT) No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) MARIANE TRINDADE DE PAULA.pdf: 5612709 bytes, checksum: a2f34c2760ece6fed258912c3f6d2442 (MD5) / Made available in DSpace on 2017-06-05T14:23:44Z (GMT). No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) MARIANE TRINDADE DE PAULA.pdf: 5612709 bytes, checksum: a2f34c2760ece6fed258912c3f6d2442 (MD5) Previous issue date: 2017 / Os efeitos deletérios de dietas como, por exemplo, as dietas ricas em gorduras (DRG) estão, cada vez mais, sendo estudados uma vez que eleva os níveis de triglicerídeos (TGC), causando um acúmulo de gordura, diminuindo a tolerância ao estresse e, consequentemente, propiciando o desenvolvimento de doenças e complicações que levam a diminuição da expectativa de vida e/ou morte precoce dos indivíduos. A hesperidina (Hesp), um flavonóide cítrico, já demonstrou ter propriedades antioxidantes representando um potencial agente protetor contra danos ligados à obesidade. Assim, o objetivo deste estudo foi investigar as alterações comportamentais, bioquímicas e genéticas induzidas por uma DRG em exemplares adultos e descendentes da mosca da fruta Drosophila melanogaster, bem como os efeitos terapêuticos da Hesp frente a estas alterações. Através deste estudo avaliou-se os danos oxidativos, a atividade e expressão de enzimas antioxidantes, como a superóxido dismutase (SOD) e catalase (CAT), e expressão de mRNA de enzimas envolvidas no metabolismo dos ácidos graxos como acetil-CoA sintetase (ACeCS 1) e acil-CoA sintetase (ACSL 1) e modulação da via de sinalização de estresse. Como resultados, nosso estudo demonstrou pela primeira vez que as moscas progenitoras adultas alimentadas por sete dias com DRG têm um desempenho locomotor reduzido, um aumento da ACeCS 1 e ACSL 1, aumento na produção de espécies reativas e substâncias reativas ao ácido tiobarbitúrico, aumento da expressão da proteína de choque térmico 83 (HSP83) e proteína quinase ativada por mitógenos 2 (MPK2), encurtando a vida útil destas moscas. Além disso, DRG quando adicionada durante todo o período de desenvolvimento embrionário, causa nas moscas descendentes um aumento nos níveis de TGC e glicose, juntamente com um aumento no nível de expressão de mRNA de DILP6, uma diminuição na enzima ACeCS1 presente no metabolismo de ácidos graxos, SOD e CAT em níveis de expressão de mRNA e diminuição da atividade de CAT. Os resultados observados a partir do co-tratamento com a Hesp e a DRG, este composto mostrou ser eficaz na redução de alguns parametros de alterações metabólicas, melhorou os níveis de TGC, glicose, parametros de estresse oxidativo, manteve a viabilidade celular e mitocondrial, melhorou o desempenho locomotor e atividade da enzima acetilcolinesterase (AChE), aumentando a expectativa de vida das moscas progenitoras. Em relação às moscas descendentes, a Hesp melhorou os níveis de TGC, diminuiu os níveis de glicose protegendo contra um possível desenvolvimento de sintomas pré-diabéticos, melhorando a taxa de eclosão dos ovos e expectativa de vida. Portanto, através deste estudo revelamos um eficiente papel protetor do flavonóide Hesp no tratamento de moscas progenitoras ou descendentes que receberam DRG demonstrando assim que este composto é capaz de atenuar alterações metabólicas, estresse oxidativo e sinalização de proteínas causadas pela obesidade.

Dietas hiperlipídicas e a esteatose hepática são condições extremamente prevalentes. Trabalhos anteriores mostraram que a esteatose está associada a um aumento na geração de espécies reativas de oxigênio (ERO), e que isso pode mediar danos no fígado. Neste trabalho nós investigamos os possíveis mecanismos que desencadeiam os aumentos nas taxas de geração de ERO por meio da administração de dietas hiperlipídicas. Nós descobrimos que mitocôndrias de animais sujeitos a dietas hiperlipídicas não apresentaram diferenças significativas quanto a capacidade respiratória máxima e acoplamento, mas eram capazes de gerar mais ERO especificamente quando usados substratos do metabolismo de ácidos graxos. Além disso, foi observado que muitas isoformas de acil-CoA desidrogenases estavam mais expressas nos fígados de animais alimentados pela dieta hiperlipídica. No entanto, quando realizados ensaios de atividade enzimática apenas a acil CoA desidrogenase de cadeia longa (VLCAD) foi mais ativa. Estudos conduzidos com mitocôndrias permeabilizadas e expostas a grupos acil-CoA de diferentes tamanhos sugerem que a VLCAD pode ser uma fonte da produção aumentada de ERO em animais submetidos a dietas hiperlipídicas. Esta produção foi estimulada pela ausência de NAD+. Concluindo, nossos estudos descobriram uma nova fonte importante na geração de ERO estimulada por dietas hiperlipídicas, a VLCAD / High fat diets and accompanying hepatic steatosis are highly prevalent conditions. Previous work has shown that steatosis occurs concomitantly with enhanced reactive oxygen species (ROS) generation, which may mediate further liver damage. Here we investigated mechanisms leading to enhanced ROS generation following high fat diets (HFD). We found that mitochondria from HFD livers present no differences in maximal respiratory rates and coupling, but generate more ROS specifically when fatty acids are used as substrates. Indeed, many acyl-CoA dehydrogenase isoforms were found to be more highly expressed in HFD livers, although only the very long chain acyl-CoA dehydrogenase (VLCAD) was more functionally active. Studies conducted with permeabilized mitochondria and different chain length acyl-CoA derivatives suggest that VLCAD is a source of enhanced ROS production in mitochondria from HFD animals. This production is stimulated by the lack of NAD+. Overall, our studies uncover VLCAD as a novel, diet-sensitive, source of mitochondrial ROS

Thesis (Ph. D.)--University of Oklahoma. / Bibliography: leaves 155-161.

Sudden Infant Death (SIDS) has been associated with medium-chain acyl-CoA dehydrogenase (MCAD) deficiency, an inborn error of fatty acid oxidation. Blood and tissue samples from a large cohort of SIDS victims were analyzed for the presence of dodecanoic acid (C₁₂) by gas chromatography. A subgroup of these cases had a significantly higher blood concentration than age-matched controls, suggesting MCAD deficiency. An animal study using Sprague-Dawley rats was done to mimic the effects of MCAD deficiency. Significantly increased blood concentrations of dodecanoic acid were observed. Decreased values in heart and liver were puzzling findings. The data indicate that dodecanoic acid is a blood marker for MCAD deficiency.

<p>  </p> <p>Biosynthesis of fatty acids and specialized metabolites, such as polyketides, is dependent on the C-C bond forming enzymatic activity of carboxylases and <u>k</u>eto<u>s</u>ynthases (KS). Carboxylases and KS perform complex carbon-carbon bond forming reactions via a ping-pong mechanism; the catalytic interactions of which are still unclear. The KS reaction involves the Claisen condensation of an acylated enzyme with a malonyl-thioester, driven forward by the energy of the malonyl-thioester decarboxylation. Similarly, the carboxylase proceeds via a carboxyl-biotin-enzyme intermediate, and a subsequent C-C bond forming reaction. Engineering the substrate specificity of these enzyme involved in producing polyketides is sought after for the purpose of producing novel, derivative polyketides. These derivative polyketides may have serve as effective new antibiotics, of which discovery has waned. Unfortunately, incomplete understanding of protein-protein interactions, conformational changes, and substrate orientation in catalysis leads to not well informed engineering attempts. A challenge in deducing the catalytic details of enzymes acting on malonyl-thioesters in general is the hyper-reactivity of their β-ketoacid and thioester substrates, which are prone to hydrolysis and decarboxylation. Many structures of malonyl-CoA bound enzymes feature hydrolysis of the thioester, preventing determination of enzyme:substrate interactions in structure-function studies. To work around this problem of innate reactivity, groups have synthesized a variety of acyl-thioester analogs for probing the details of enzyme catalysis with mixed success. The success of these enzyme:analog mechanistic studies appears to hinge upon the similarity of the analog to the natural substrate. Here, we demonstrate the synthesis of near-natural, acyl-thioester analogs, featuring single atom substitutions. Using a novel UV-vis assay, we have determined <em>K</em>i values of our analogs with paradigmatic KSs <em>E. coli</em> FabH. These <em>K</em>i values are marginally higher than the substrate <em>K</em>m values, suggesting the KSs bind the analogs as they would natural substrates. Using this information, we have conducted preliminary X-ray crystallography experiments to determine the carboxylase:analog and KS:analog catalytic interactions, which will allow for new insight into debated C-C bond forming catalytic details. The information presented in this thesis and additional studies on protein-protein interactions can be leveraged into informed engineering studies of PKS enzymes.</p>

High-value industrial oils are essential for many processes and have great economic and environmental impacts. The tung tree produces a high-value seed oil. Approximately 80% of tung oil is α-eleostearic acid, which has a high degree of unsaturation thus giving it properties as a drying oil. The identification of the biological components in tung is imperative to further the knowledge of its processes. Four unique tung acyl-CoA binding proteins, VfACBP3a, VfACBP3b, VfACBP4, and VfACBP6 were identified and the genes encoding them were cloned and analyzed to determine their biological roles. The VfACBPs were observed to be similar to other organisms' ACBPs, especially Arabidopsis thaliana. In addition, each gene was expressed in all tung tissues. They were shown to interact with VfDGAT1 and VfDGAT2, two known components of tung lipid metabolism. Finally, VfACBP3a and VfACBP6 were expressed in the seeds of transgenic plants to study the effects of VfACBP expression on seed lipid fatty acid content.