HIV-1 has evolved a number of strategies in response to current anti-retroviral drugs and the selection pressure of humoral and cellular immunity. In particular, R5 viral strains that are essential for AIDS pathogenesis are very resistant to neutralization by antibodies. Therefore, the aim of this thesis was to develop synthetic nucleic acid ligands, aptamers, against gp120 of an R5 strain of HIV-1, with a view of using aptamers as novel neutralization molecules and analytical tools to study HIV-1 entry into target cells. The central hypothesis of this thesis was that aptamers by virtue of their small size and slow dissociation rates, compared to antibodies, would easily access and bind occluded gp120 neutralization sites. Using the SELEX protocol and SPR technology, I isolated 2'-Fluoro-pyrimidine-RNA aptamers against HIV-l_Ba-L monomeric gp120. Most of these aptamers not only bound gp120 with high affinities but also neutralized R5 primary isolates in human PBMC by 1,000 to 100,000-fold, truly unprecedented when compared with natural ligands such as antibodies. Some aptamers, like B4, defined a conserved site of gp120 that could not mutate to escape neutralization following stringent selection, in vitro, for breakthrough virus. This was consistent with subsequent findings that B4 aptatope (binding site) overlaps a poorly immunogenic but highly conserved CD4-induced epitope as determined by competition with 17b and 48d mAbs that map to this neutralization epitope on the gp120. This study was thus the first of its kind to describe neutralization of HIV-1 primary isolates by a ligand against the CD4-induced epitope. Most intriguing, although B4 potently neutralized HIV-1_Ba-L infection in PBMC, which is a mixed T cell and macrophage population, it modestly neutralized infection of the same virus in a purified culture of macrophages. These findings are intriguing in that they suggest that aptamers could be used to dissect unique sites on the virus that interact with target cell surface in ways that have not been revealed heretofore, and would help understand better HIV-1 entry pathways, especially in macrophages. Thus neutralizing aptamers such as these could be exploited to provide leads in developing alternative anti-HIV-1 drugs and a deeper understanding of the molecular interactions between the virus and its host cell.

Thesis (Ph. D.)--University of Nevada, Reno, 2008. / "May, 2008." Includes bibliographical references (leaves 101-117). Online version available on the World Wide Web.

Thesis (Ph. D.)--University of Canterbury, 2009. / Typescript (photocopy). Includes bibliographical references (leaves 191-230). Also available via the World Wide Web.

In this study, we show that removal of a quorum sensing subtype of stromal macrophage expands the support capacity of ex vivo bone marrow culture. Notably, this system maintains much of the remaining paracrine signaling of the organ, unlike traditional macrophage ablation or cytokine supplemented media and does not place undue stress on the HSPC itself. Recent studies have independently identified alternatively activated macrophages that suppress hematopoiesis in in vitro culture. We have identified for the first time, a small molecule capable of preferentially killing those cells, thus providing a method to both culture unaltered HSPC ex vivo for long periods of time and significantly expand transient progenitor cells to assist transplantation efficiency. Our culture system in unique in its ability to maintain cultured HSPC in the physiological micro-environment of the bone marrow We found the small molecule “999” capable of expanding hematopoietic capacity of stroma culture by selectively eliminating an MHCII-Hi subpopulation of stromal macrophages that suppress HSPC growth. Removal of these macrophages enables long-term HSC ex vivo stability and massive expansion of the MPP and its progeny. Cultures expanded in this manner have increased engraftment potential and behave physiologically normal upon transplantation. This investigation has also helped to uncover the role of TGFB in bone marrow quiescence signaling. The MHCII-HI target cells express TGFB and through it, signal quiescence to the HSPC, likely as a form of quorum sensing. Targeted acute elimination of that signal leads to unabashed expansion of MPP. Furthermore, macrophage polarization in the tumor microenvironment has also been show to promote tumor formation and often leads to poor prognosis. Molecular tools such as 999 that have the ability to alter macrophage polarization ratios may prove to be valuable synergistic tools for oncologists in conjunction with current therapies.

Thesis (Ph. D.)--Ohio State University, 2007. / Title from first page of PDF file. Includes bibliographical references (p. 283-321).

Thesis (Ph. D.)--Ohio State University, 2007. / Title from first page of PDF file. Includes bibliographical references (p. 127-148).

INTRODUÇÃO: O objetivo do estudo foi avaliar o perfil de marcadores imuno-histoquímicos relacionados às células NK em biópsias de aloenxertos renais com diagnóstico anatomopatológico de rejeição aguda (mediadas por células T ou anticorpos) e estabelecer relações desses marcadores com parâmetros morfológicos de lesão à microcirculação e sobrevida do enxerto. MÉTODOS: Estudo retrospectivo histórico que revisou 74 biópsias realizadas entre janeiro de 2009 e dezembro de 2012, de pacientes com rejeição aguda mediada por células T (n=36), rejeição aguda mediada por anticorpos com expressão positiva (n=19) ou negativa (n=19) para o marcador C4d, juntamente com levantamento de dados clínicos e laboratoriais pertinentes ao estudo. Foram realizadas reações imuno-histoquímicas, para os marcadores CD56, CD57, CD16, CD68, CD3, CD8 e CD4 com ênfase para os marcadores CD56 e CD16. Foi feita análise das células positivas em toda a cortical da biópsia nos compartimento intersticial, glomerular e vascular. Testes estatísticos foram aplicados conforme os pressupostos definidos no objetivo da pesquisa. RESULTADOS: No compartimento intersticial, células CD56+ (P = 0,004) e CD57+ (P < 0,001) foram expressas em maior quantidade em biópsias negativas para dosagem sérica de anticorpos específicos anti-doador (DSA) com diagnóstico de rejeição aguda mediada por células T. CD56 intersticial foi associado estatisticamente com presença de glomerulite (g >= 1) (P = 0,02) e ausência / leve capilarite peritubular (ptc <= 1) (P = 0,003). Células intersticiais positivas para o marcador CD56 com média superior a 0,56 céls/mm2 tiveram uma pior sobrevida do enxerto renal (P = 0,028). Biópsias com contagem inferior ou igual a 0,56 cél/mm2 tiveram associação estatisticamente significante para ausência ou leve capilarite peritubular (P = 0,012) e com contagem superior a 0,56 céls/mm2, foram associadas à presença de glomerulite (P = 0,002). Foi observado maior número de células positivas para o marcador CD16 no compartimento glomerular em biópsias positivas para dosagem sérica de DSA com diagnóstico de rejeição aguda mediada por anticorpos (P = 0,03) e em biópsias com presença de glomerulite (P = 0,009). Presença de maior número de células CD16+ no compartimento intersticial associou-se com capilarite peritubular (P = 0,0001). CONCLUSÕES: Maior expressão de células CD56 positivas no compartimento intersticial das biópsias foi significantemente associada com escores relacionados à lesão na microcirculação, especialmente glomerulite, com rejeição aguda mediada por células T e pior sobrevida do enxerto renal. Células CD16 positivas, no compartimento glomerular foram associadas com rejeição aguda mediada por anticorpos e glomerulite. As variações na expressão dos marcadores de células NK nos diferentes compartimentos da biópsia renal podem sugerir presença de envolvimento das células NK em diferentes vias do sistema imune nas rejeições agudas de aloenxertos renais / INTRODUCTION: The aim of this study was to investigate the immunohistochemical profile of markers related to NK cells from renal allograft biopsies with morphological diagnosis of acute rejection (T-cells or antibodies mediated rejection) and to study associations of those markers with types of rejection, microcirculation injury morphological parameters and graft survival. METHODOLOGY: Historical retrospective study that reviewed 74 biopsies performed between January 2009 and December 2012 in patients with acute T-cell-mediated rejection (n=36) and acute antibody-mediated rejection with (n=19) or without evident C4d deposition (n=19). The study was performed with relevant clinical and laboratory data. Immunohistochemical reactions were performed for CD56, CD57, CD16, CD68, CD3, CD8 and CD4 markers with highlights for CD56 and CD16. Counting of positive cells throughout cortical biopsy was performed in glomerular, interstitial and vascular compartments. Statistical tests were applied according to assumptions set out the goal of the study.RESULTS: DSA-negative biopsies-from patients with acute T-cell mediated rejection (aTCMR) had an increased expression of CD56+ and CD57+ cells (P = 0.004 and P < 0.001) in the interstitial compartment in comparison with donor-specific antibodies ( DSA)-positive biopsies from patients acute antibody-mediated rejection with and without C4d deposition. Interstitial CD56+ cells had an increased expression for presence of glomerulitis (g >= 1) (P = 0.02) and peritubular capillaritis (ptc >= 2) (P = 0.003). Interstitial CD56 + cells with mean superior to 0.56cells/mm2 had worse allograft survival (P = 0.028). CD56+ cells in the interstitial compartment with mean inferior or equal to 0.56cells/mm2 associated with absence or mild peritubular capillaritis (P = 0.012) and mean superior to 0.56cells/mm2 was associated with presence of glomerulitis (P = 0.002). CD16+ cells was increased in the glomerular compartment in DSA-positive biopsies (P = 0.03) and in the presence of glomerulitis (P = 0.009). Interstitial CD16+ cells associated with peritubular capillaritis (P = 0.0001).CONCLUSION: CD56+ cell infiltrates in the interstitial compartment were significantly associated with microcirculation injury scores, especially glomerulitis, acute T-cell mediated rejection and clinical outcomes. CD16+ cell infiltrates in glomerular compartment was associated with acute antibody-mediated rejection and glomerulitis. Our findings showed variations in expression of NK cells markers in renal biopsy different compartments which might suggest the involvement of NK cells in different immune system pathways in acute renal allograft rejection

Made available in DSpace on 2014-06-11T19:31:32Z (GMT). No. of bitstreams: 0 Previous issue date: 2004-08-30Bitstream added on 2014-06-13T18:42:17Z : No. of bitstreams: 1 silva_pt_dr_arafo.pdf: 428042 bytes, checksum: fe2b6b39c1693d5ed4af444bc6e9be75 (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / Analisou-se a citotoxicidade dos seguintes cimentos: Endofill, Sealapex e Polifil, quanto à liberação de óxido nítrico (NO) e peróxido de hidrogênio (H2O2) em culturas de macrófagos peritoneais de camundongos e também utilizamos um método de análise colorimétrica usando M.T.T. Concluiu-se que as considerações presentes após os resultados, discussão e constatação os cimentos que apresentaram o menor nível de citotoxicidade foi o Endofill, seguido da equivalência de liberação de Polifil e Sealapex, embora todos foram menos citotóxicos que o Grupo Controle Zimosan-A para H2O2 e o LPS para o NO. / It was analyzed the citotoxicity of the following cements Endofill, Sealapex, and Poliol regarding the nitric oxide (NO) release and the hydrogen peroxide (H2O2) in the peritoneais macrophages medium of mice in different concentrations and we have also analyzed a colorimetric method using the M.T.T. It was concluded from the considerations which were present in the results, discussion, and verification that the cement which presented the lowest citotoxicity level was the Sealapex followed by the Polifil and the Endofill, although all of them were less citotoxic than the Zimosan-A control group for H2O2 and the LPS for the NO.

Orientador: Renato de Toledo Leonardo / Banca: Celso Kenji Nishiyama / Banca: Abílio Albuquerque Maranhão de Moura / Banca: Iracilda Zeppone Carlos / Banca: Idomeo Bonetti Filho / Resumo: Analisou-se a citotoxicidade dos seguintes cimentos: Endofill, Sealapex e Polifil, quanto à liberação de óxido nítrico (NO) e peróxido de hidrogênio (H2O2) em culturas de macrófagos peritoneais de camundongos e também utilizamos um método de análise colorimétrica usando M.T.T. Concluiu-se que as considerações presentes após os resultados, discussão e constatação os cimentos que apresentaram o menor nível de citotoxicidade foi o Endofill, seguido da equivalência de liberação de Polifil e Sealapex, embora todos foram menos citotóxicos que o Grupo Controle Zimosan-A para H2O2 e o LPS para o NO. / Abstract: It was analyzed the citotoxicity of the following cements Endofill, Sealapex, and Poliol regarding the nitric oxide (NO) release and the hydrogen peroxide (H2O2) in the peritoneais macrophages medium of mice in different concentrations and we have also analyzed a colorimetric method using the M.T.T. It was concluded from the considerations which were present in the results, discussion, and verification that the cement which presented the lowest citotoxicity level was the Sealapex followed by the Polifil and the Endofill, although all of them were less citotoxic than the Zimosan-A control group for H2O2 and the LPS for the NO. / Doutor

INTRODUÇÃO: O objetivo do estudo foi avaliar o perfil de marcadores imuno-histoquímicos relacionados às células NK em biópsias de aloenxertos renais com diagnóstico anatomopatológico de rejeição aguda (mediadas por células T ou anticorpos) e estabelecer relações desses marcadores com parâmetros morfológicos de lesão à microcirculação e sobrevida do enxerto. MÉTODOS: Estudo retrospectivo histórico que revisou 74 biópsias realizadas entre janeiro de 2009 e dezembro de 2012, de pacientes com rejeição aguda mediada por células T (n=36), rejeição aguda mediada por anticorpos com expressão positiva (n=19) ou negativa (n=19) para o marcador C4d, juntamente com levantamento de dados clínicos e laboratoriais pertinentes ao estudo. Foram realizadas reações imuno-histoquímicas, para os marcadores CD56, CD57, CD16, CD68, CD3, CD8 e CD4 com ênfase para os marcadores CD56 e CD16. Foi feita análise das células positivas em toda a cortical da biópsia nos compartimento intersticial, glomerular e vascular. Testes estatísticos foram aplicados conforme os pressupostos definidos no objetivo da pesquisa. RESULTADOS: No compartimento intersticial, células CD56+ (P = 0,004) e CD57+ (P < 0,001) foram expressas em maior quantidade em biópsias negativas para dosagem sérica de anticorpos específicos anti-doador (DSA) com diagnóstico de rejeição aguda mediada por células T. CD56 intersticial foi associado estatisticamente com presença de glomerulite (g >= 1) (P = 0,02) e ausência / leve capilarite peritubular (ptc <= 1) (P = 0,003). Células intersticiais positivas para o marcador CD56 com média superior a 0,56 céls/mm2 tiveram uma pior sobrevida do enxerto renal (P = 0,028). Biópsias com contagem inferior ou igual a 0,56 cél/mm2 tiveram associação estatisticamente significante para ausência ou leve capilarite peritubular (P = 0,012) e com contagem superior a 0,56 céls/mm2, foram associadas à presença de glomerulite (P = 0,002). Foi observado maior número de células positivas para o marcador CD16 no compartimento glomerular em biópsias positivas para dosagem sérica de DSA com diagnóstico de rejeição aguda mediada por anticorpos (P = 0,03) e em biópsias com presença de glomerulite (P = 0,009). Presença de maior número de células CD16+ no compartimento intersticial associou-se com capilarite peritubular (P = 0,0001). CONCLUSÕES: Maior expressão de células CD56 positivas no compartimento intersticial das biópsias foi significantemente associada com escores relacionados à lesão na microcirculação, especialmente glomerulite, com rejeição aguda mediada por células T e pior sobrevida do enxerto renal. Células CD16 positivas, no compartimento glomerular foram associadas com rejeição aguda mediada por anticorpos e glomerulite. As variações na expressão dos marcadores de células NK nos diferentes compartimentos da biópsia renal podem sugerir presença de envolvimento das células NK em diferentes vias do sistema imune nas rejeições agudas de aloenxertos renais / INTRODUCTION: The aim of this study was to investigate the immunohistochemical profile of markers related to NK cells from renal allograft biopsies with morphological diagnosis of acute rejection (T-cells or antibodies mediated rejection) and to study associations of those markers with types of rejection, microcirculation injury morphological parameters and graft survival. METHODOLOGY: Historical retrospective study that reviewed 74 biopsies performed between January 2009 and December 2012 in patients with acute T-cell-mediated rejection (n=36) and acute antibody-mediated rejection with (n=19) or without evident C4d deposition (n=19). The study was performed with relevant clinical and laboratory data. Immunohistochemical reactions were performed for CD56, CD57, CD16, CD68, CD3, CD8 and CD4 markers with highlights for CD56 and CD16. Counting of positive cells throughout cortical biopsy was performed in glomerular, interstitial and vascular compartments. Statistical tests were applied according to assumptions set out the goal of the study.RESULTS: DSA-negative biopsies-from patients with acute T-cell mediated rejection (aTCMR) had an increased expression of CD56+ and CD57+ cells (P = 0.004 and P < 0.001) in the interstitial compartment in comparison with donor-specific antibodies ( DSA)-positive biopsies from patients acute antibody-mediated rejection with and without C4d deposition. Interstitial CD56+ cells had an increased expression for presence of glomerulitis (g >= 1) (P = 0.02) and peritubular capillaritis (ptc >= 2) (P = 0.003). Interstitial CD56 + cells with mean superior to 0.56cells/mm2 had worse allograft survival (P = 0.028). CD56+ cells in the interstitial compartment with mean inferior or equal to 0.56cells/mm2 associated with absence or mild peritubular capillaritis (P = 0.012) and mean superior to 0.56cells/mm2 was associated with presence of glomerulitis (P = 0.002). CD16+ cells was increased in the glomerular compartment in DSA-positive biopsies (P = 0.03) and in the presence of glomerulitis (P = 0.009). Interstitial CD16+ cells associated with peritubular capillaritis (P = 0.0001).CONCLUSION: CD56+ cell infiltrates in the interstitial compartment were significantly associated with microcirculation injury scores, especially glomerulitis, acute T-cell mediated rejection and clinical outcomes. CD16+ cell infiltrates in glomerular compartment was associated with acute antibody-mediated rejection and glomerulitis. Our findings showed variations in expression of NK cells markers in renal biopsy different compartments which might suggest the involvement of NK cells in different immune system pathways in acute renal allograft rejection