Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2010. / Cataloged from PDF version of thesis. / Includes bibliographical references (p. 199-205). / In a stratified rotating fluid, frictionally driven circulations couple with the buoyancy field over sloping topography. Analytical and numerical methods are used to quantify the impact of this coupling on the vertical circulation, spindown of geostrophic flows, and the formation of a shelfbreak jet. Over a stratified. slope, linear spindown of a geostrophic along-isobath flow induces cross-isobath Ekman flows. Ekman advection of buoyancy weakens the vertical circulation and slows spindown. Upslope (downslope) Ekman flows tend to inject (remove) potential vorticity into (from) the ocean. Momentum advection and nonlinear buoyancy advection are examined in setting asymmetries in the vertical circulation and the vertical relative vorticity field. During nonlinear homogeneous spindown over a flat bottom, momentum advection weakens Ekman pumping and strengthens Ekman suction, while cyclonic vorticity decays faster than anticyclonic vorticity. During nonlinear stratified spindown over a slope, nonlinear advection of buoyancy enhances the asymmetry in Ekman pumping and suction, whereas anticyclonic vorticity can decay faster than cyclonic vorticity outside of the boundary layers. During the adjustment of a spatially uniform geostrophic current over a shelfbreak, coupling between the Ekman flow and the buoyancy field generates Ekman pumping near the shelfbreak, which leads to the formation of a jet. Scalings are presented for the upwelling strength, the length scale over which it occurs, and the timescale for jet formation. The results are applied to the Middle Atlantic Bight shelfbreak. / by Jessica A. Benthuysen. / Ph.D.

Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Mechanical Engineering; and the Woods Hole Oceanographic Institution), 2006. / Includes bibliographical references (p. 155-169). / Hurricanes, powerful storms with wind speeds that can exceed 80 m/s, are one of the most destructive natural disasters known to man. While current satellite technology has made it possible to effectively detect and track hurricanes, expensive 'hurricane-hunting' aircraft are required to accurately classify their destructive power. Here we show that passive undersea acoustic techniques may provide a promising tool for accurately quantifying the destructive power of a hurricane and so may provide a safe and inexpensive alternative to aircraft-based techniques. It is well known that the crashing of wind-driven waves generates underwater noise in the 10 Hz to 10 kHz range. Theoretical and empirical evidence are combined to show that underwater acoustic sensing techniques may be valuable for measuring the wind speed and determining the destructive power of a hurricane. This is done by first developing a model for the acoustic intensity and mutual intensity in an ocean waveguide due to a hurricane and then determining the relationship between local wind speed and underwater acoustic intensity. / (cont.) Acoustic measurements of the underwater noise generated by hurricane Gert are correlated with meteorological data from reconnaissance aircraft and satellites to show that underwater noise intensity between 10 and 50 Hz is approximately proportional to the cube of the local wind speed. From this it is shown that it should be feasible to accurately measure the local wind speed and quantify the destructive power of a hurricane if its eye wall passes directly over a single underwater acoustic sensor. The potential advantages and disadvantages of the proposed acoustic method are weighed against those of currently employed techniques. It has also long been known that hurricanes generate microseisms in the 0.1 to 0.6 Hz frequency range through the non-linear interaction of ocean surface waves. Here we model microseisms generated by the spatially inhomogeneous waves of a hurricane with the non-linear wave equation where a second-order acoustic field is created by first-order ocean surface wave motion. We account for the propagation of microseismic noise through range-dependent waveguide environments from the deep ocean to a receiver on land. We compare estimates based on the ocean surface wave field measured in hurricane Bonnie with seismic measurements from Florida. / by Joshua David Wilson. / Ph.D.

Thesis (S. M.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2009. / This electronic version was submitted by the student author. The certified thesis is available in the Institute Archives and Special Collections. / Cataloged from student submitted PDF version of thesis. / Includes bibliographical references (p. 41-43). / Mechanisms for the tidal component of salt flux in the Hudson River estuary are investigated using a 3D numerical model. Variations with river discharge, fortnightly tidal forcing, and along channel variability are explored. Four river discharge conditions were considered: 1200 m3 s-1, 600 m3 s-1, 300 m3 s-1, 150 m3 s-1. Tide-induced residual salt flux was found to be variable along the channel, with locations of counter-gradient flux during both neap and spring tide. The magnitude of tidal salt flux scales with the river flow and has no clear dependence on the spring-neap tidal forcing. The diffusive fraction, ?, has a value of -0.25 to 0.46 in the lower estuary, increasing to -0.23 to 1 near the head of salt. The phase lag between tidal salinity and velocity is analyzed at three cross-sections with: large positive, negative, and weak tidal salt flux. The composite Froude number, G2, is calculated along the channel and indicates nearly ubiquitous supercritical flow for maximum flood and ebb during both neap and spring tides. Subcritical flow occurs during slack water and at geographically locked locations during neap floods. Application of two-layer, frictional hydraulic theory reveals how variations in channel width and depth generate tidal asymmetries in cross-sectional salinity, the key ingredient of tidal salt flux. / by Patricia Ann Engel. / S.M.

Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2010. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Large earthquake rupture and triggering mechanisms that drive seismicity in subduction zones are investigated in this thesis using a combination of earthquake observations, statistical and physical modeling. A comparison of the rupture characteristics of M 7.5 earthquakes with fore-arc geological structure suggests that long-lived frictional heterogeneities (asperities) are primary controls on the rupture extent of large earthquakes. To determine when and where stress is accumulating on the megathrust that could cause one of these asperities to rupture, this thesis develops a new method to invert earthquake catalogs to detect space-time variations in stressing rate. This algorithm is based on observations that strain transients due to aseismic processes such as fluid flow, slow slip, and afters lip trigger seismicity, often in the form of earthquake swarms. These swarms are modeled with two common approaches for investigating time-dependent driving mechanisms in earthquake catalogs: the stochastic Epidemic Type Aftershock Sequence model [Ogata, 1988] and the physically-based rate-state friction model [Dieterich, 1994]. These approaches are combined into a single model that accounts for both aftershock activity and variations in background seismicity rate due to aseismic processes, which is then implemented in a data assimilation algorithm to invert catalogs for space-time variations in stressing rate. The technique is evaluated with a synthetic test and applied to catalogs from the Salton Trough in southern California and the Hokkaido corner in northeastern Japan. The results demonstrate that the algorithm can successfully identify aseismic transients in a multi-decade earthquake catalog, and may also ultimately be useful for mapping spatial variations in frictional conditions on the plate interface. / by Andrea Lesley Llenos. / Ph.D.

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2017. / Cataloged from PDF version of thesis. / Includes bibliographical references (pages 104-115). / This thesis investigates the evolution of the oceanic lithosphere in a broad sense from formation to subduction, in a focused case at the ridge, and in a focused case proximal to subduction. In general, alteration of the oceanic lithosphere begins at the ridge through focused and diffuse hydrothermal flow, continues off axis through low temperature circulation, and may occur approaching subduction zones as bending related faulting provides fluid pathways. In Chapter 2 1 use a dataset of thousands of microearthquakes recorded at the Rainbow massif on the Mid-Atlantic Ridge to characterize the processes which are responsible for the long-term, high-temperature, hydrothermal discharge found hosted in this oceanic core complex. I find that the detachment fault responsible for the uplift of the massif is inactive and that the axial valleys show no evidence for faulting or active magma intrusion. I conclude that the continuous, low-magnitude seismicity located in diffuse pattern in a region with seismic velocities indicating ultramafic host rock suggests that serpentinization may play a role in microearthquake generation but the seismic network was not capable of providing robust focal mechanism solutions to constrain the source characteristics. In Chapter 3 I find that the Juan de Fuca plate, which represents the young/hot end-member of oceanic plates, is lightly hydrated at upper crustal levels except in regions affected by propagator wakes where hydration of lower crust and upper mantle is evident. I conclude that at the subduction zone the plate is nearly dry at upper mantle levels with the majority of water contained in the crust. Finally, in Chapter 4 I examine samples of cretaceous age serpentinite sampled just before subduction at the Puerto Rico Trench. I show that these upper mantle rocks were completely serpentinized under static conditions at the Mid-Atlantic Ridge. Further, they subsequently underwent 100 Ma of seafloor weathering wherein the alteration products of serpentinization themselves continue to be altered. I conclude that complete hydration of the upper mantle is not the end point in the evolution of oceanic lithosphere as it spreads from the axis to subduction. / by Gregory Horning. / Ph. D.

Thesis (Ph. D.)--Joint Program in Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Mechanical Engineering; and the Woods Hole Oceanographic Institution), 2006. / Includes bibliographical references (leaves 155-173). / A fundamental problem in limnology and oceanography is the inability to quickly identify and map distributions of plankton. This thesis addresses the problem by applying statistical machine learning to video images collected by an optical sampler, the Video Plankton Recorder (VPR). The research is focused on development of a real-time automatic plankton recognition system to estimate plankton abundance. The system includes four major components: pattern representation/feature measurement, feature extraction/selection, classification, and abundance estimation. After an extensive study on a traditional learning vector quantization (LVQ) neural network (NN) classifier built on shape-based features and different pattern representation methods, I developed a classification system combined multi-scale cooccurrence matrices feature with support vector machine classifier. This new method outperforms the traditional shape-based-NN classifier method by 12% in classification accuracy. Subsequent plankton abundance estimates are improved in the regions of low relative abundance by more than 50%. Both the NN and SVM classifiers have no rejection metrics. In this thesis, two rejection metrics were developed. / (cont.) One was based on the Euclidean distance in the feature space for NN classifier. The other used dual classifier (NN and SVM) voting as output. Using the dual-classification method alone yields almost as good abundance estimation as human labeling on a test-bed of real world data. However, the distance rejection metric for NN classifier might be more useful when the training samples are not "good" ie, representative of the field data. In summary, this thesis advances the current state-of-the-art plankton recognition system by demonstrating multi-scale texture-based features are more suitable for classifying field-collected images. The system was verified on a very large real-world dataset in systematic way for the first time. The accomplishments include developing a multi-scale occurrence matrices and support vector machine system, a dual-classification system, automatic correction in abundance estimation, and ability to get accurate abundance estimation from real-time automatic classification. The methods developed are generic and are likely to work on range of other image classification applications. / by Qiao Hu. / Ph.D.

Thesis (S.M.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Mechanical Engineering; and the Woods Hole Oceanographic Institution), 2007. / Includes bibliographical references (p. 73-76). / In order to overcome the challenges that an anisotropic noise field poses for underwater target tracking, we conduct an onboard estimation of the horizontal noise directionality in the real-time processing suite of an autonomous underwater vehicle (AUV) towing a horizontal line array. The estimation of the noise directionality is a precursor to another adaptive behavior: optimizing tracking capability of a towed array by choosing a particular heading that minimizes the detection level in the target's direction. In each distinct simulated anisotropic noise field, the AUV successfully calculates the optimal towed array headings based on the real-time estimation of the horizontal noise directionality. The findings reveal a clear advantage over the conventional broadside beam tracking method, with some limitations due predominantly to the noise field itself. / by Maria Alejandra Parra-Orlandoni. / S.M.

Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2010. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Excess nitrogen input is deleterious to coastal waters, resulting in deterioration of the water quality, increases in harmful algal blooms and disease in commercial fish stocks. A significant portion of this nitrogen enters coastal waters through groundwater systems. Here we use isotopic and molecular biological methods to identify the populations of nitrifiers and denitrifiers, where they occur, and what levels of activity are present through the upper four meters of a coastal groundwater system. This work shows two different populations of putative ammonia-oxidizing archaea (AOA) based on the ammonia mono-oxygenase gene (amoA), one shallow population most closely related to open ocean water column-like sequences and a deeper population that is more closely related to estuarine-like AOA. Interestingly, while the surface population has a potential nitrification rates (456 pmol g-1 sediment day-) similar to marine sediments, the deeper population does not show detectable evidence of nitrification. Between these two archaeal populations resides an active population of ammonia-oxidizing bacteria with similar nitrification rates as the surface AOA population. The upper meter of the aquifer is also an active area of denitrification as evidenced by the coincident drop in nitrate concentration and increase in both 15N (up to + 20. 1%o) and 5180 (up to + 11. 7%o), characteristic of groundwater affected by denitrification. 16S rRNA gene surveys of the organisms present in the upper meter also are similar to soil/sediment type environments including many potential denitrifiers. However, nitrite reductase, nirS and nirK, genes were also recovered from the sediments with nirK dominating in the surface sediments. This contrasts with the deep salt wedge, where the microbial community 16S rRNA genes appear more closely related to marine or reducing sediment/wastewater type organisms, and nirS genes become the dominant denitrification gene. / by Daniel Richard Rogers. / Ph.D.

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2017. / Cataloged from PDF version of thesis. Page 216 blank. / Includes bibliographical references (pages 179-215). / Salt marshes are physically, chemically, and biologically dynamic environments found globally at temperate latitudes. Tidal creeks and marshtop ponds may expand at the expense of productive grass-covered marsh platform. It is therefore important to understand the present magnitude and drivers of production and respiration in these submerged environments in order to evaluate the future role of salt marshes as a carbon sink. This thesis describes new methods to apply the triple oxygen isotope tracer of photosynthetic production in a salt marsh. Additionally, noble gases are applied to constrain air-water exchange processes which affect metabolism tracers. These stable, natural abundance tracers complement traditional techniques for measuring metabolism. In particular, they highlight the potential importance of daytime oxygen sinks besides aerobic respiration, such as rising bubbles. In tidal creeks, increasing nutrients may increase both production and respiration, without any apparent change in the net metabolism. In ponds, daytime production and respiration are also tightly coupled, but there is high background respiration regardless of changes in daytime production. Both tidal creeks and ponds have higher respiration rates and lower production rates than the marsh platform, suggesting that expansion of these submerged environments could limit the ability of salt marshes to sequester carbon. / by Evan M. Howard. / Ph. D.

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2017. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Seasonal fluxes of meltwater control ice-flow processes across the Greenland Ice Sheet ablation zone and subglacial discharge at marine-terminating outlet glaciers. With the increase in annual ice sheet meltwater production observed over recent decades and predicted into future decades, understanding mechanisms driving the hourly to decadal impact of meltwater on ice flow is critical for predicting Greenland Ice Sheet dynamic mass loss. This thesis investigates a wide range of meltwater-driven processes using empirical and theoretical methods for a region of the western margin of the Greenland Ice Sheet. I begin with an examination of the seasonal and annual ice flow record for the region using in situ observations of ice flow from a network of Global Positioning System (GPS) stations. Annual velocities decrease over the seven-year time-series at a rate consistent with the negative trend in annual velocities observed in neighboring regions. Using observations from the same GPS network, I next determine the trigger mechanism for rapid drainage of a supraglacial lake. In three consecutive years, I find precursory basal slip and uplift in the lake basin generates tensile stresses that promote hydrofracture beneath the lake. As these precursors are likely associated with the introduction of meltwater to the bed through neighboring moulin systems, our results imply that lakes may be less able to drain in the less crevassed, interior regions of the ice sheet. Expanding spatial scales to the full ablation zone, I then use a numerical model of subglacial hydrology to test whether model-derived effective pressures exhibit the theorized inverse relationship with melt-season ice sheet surface velocities. Finally, I pair near-ice fjord hydrographic observations with modeled and observed subglacial discharge for the Saqqardliup sermia-Sarqardleq Fjord system. I find evidence of two types of glacially modified waters whose distinct properties and locations in the fjord align with subglacial discharge from two prominent subcatchments beneath Saqqardliup sermia. Continued observational and theoretical work reaching across discipline boundaries is required to further narrow our gap in understanding the forcing mechanisms and magnitude of Greenland Ice Sheet dynamic mass loss. / by Laura A. Stevens. / Ph. D.