Les vasières intertidales sont des environnements complexes et changeants, qui abritent des invertébrés enfouis dans le sédiment (la macrofaune benthique) et sont visités de manière saisonnière par de grands migrateurs : les oiseaux limicoles. Ce travail de recherche s’intéresse aux relations proie-prédateur entre les oiseaux limicoles et leur ressource alimentaire : la macrofaune benthique. La thèse est articulée en 8 chapitres qui présentent des études à différentes échelles spatio-temporelles : des saisons à la décennie, et de la baie à la route migratoire. Ces études sont basées sur un échantillonnage régulier des vasières intertidales du Golfe de Gascogne (France) ainsi que d’échantillonnages en mer des Wadden (Pays-Bas) et au Banc d’Arguin (Mauritanie). Les données de macrofaune (qualité, taille, densité, biomasse) sont couplées aux données de comptages de leurs prédateurs ainsi qu’à leur comportement alimentaire (reconstruction du régime alimentaire d’après les isotopes, les fécès, la modélisation ou l’observation de vidéos). Ces huit études apportent un éclairage sur l’écologie de leurs interactions (en intégrant des variables environnementales telles que le temps d’inondation, la granulométrie, la température, la production primaire, ou encore la latitude). Une attention particulière est portée à la variabilité des proies et du comportement alimentaire de leurs prédateurs, dans l’espace et le temps. Des encarts viennent illustrer pour l’un les techniques de reconstruction du régime alimentaire, pour l’autre les défenses développées par les mollusques marins, ou encore la relation entre énergie à disposition et sélection du site pour les limicoles. / Intertidal mudflats are complex ecosystems undergoing constant changes, home to infaunal invertebrates (benthic macrofauna), and migratory sites for particular birds : shorebirds. This research focuses on predator-prey interactions between shorebirds and their macrobenthic prey. The present thesis is composed of 8 chapters which illustrate different spatio-temporal scales : from seasons to the decade, and from the bay to the migratory flyway. These studies are based on regular benthic sampling of intertidal flats along the Bay of Biscay (France), as well as sampling data from the Dutch Wadden Sea and the Mauritanian Banc d’Arguin. Macrobenthic data (quality, sizes, densities, biomass) are linked with shorebird counts and data about their feeding behaviour (diet reconstruction from isotopes, faeces, modeling and video observations). These eight studies shed light on particular relationships between some prey and their predators, and the ecology of these interactions (including environmental variables such as inundation time, grain size, temperature, primary production, or even latitude). Particular attention is given to the variability of prey and predator behaviour in time and space. Inserts are included in between chapters to illustrate for instance different diet reconstruction techniques, anti-predation traits in marine molluscs, or relation between energy available and site selection in shorebirds.

Le remaniement sédimentaire, défini comme l’ensemble des mouvements de particules sédimentaires induits par les organismes benthiques, est l’une des deux composantes du phénomène de bioturbation. Il constitue un processus clé du fonctionnement des écosystèmes côtiers. Ce manuscrit présente une étude intégrée de ce depuis l’échelle de la simple particule sédimentaire jusqu’à celle de la communauté benthique in toto.Le développement d’une nouvelle approche expérimentale basée sur l’acquisition à haute fréquence et l’analyse de séries temporelles d’images de mouvements de luminophores le long de la paroi d’aquariums plats a permis de mesurer directement les mouvements élémentaires de particules de sédiment effectués par le bivalve A. alba. Cette approche a ainsi conduit à la première détermination expérimentale d’ « empreintes » du remaniement sédimentaire d’un invertébré marin, d’après le formalisme du modèle CTRW (Continuous Time Random Walk).Dans un second temps, le déploiement de cette nouvelle approche a permis d’évaluer, de manière dynamique (i.e. pendant des expériences de 48h) et sur l’ensemble de la partie de la colonne sédimentaire affectée par ce bivalve, le contrôle exercé par la température et par la disponibilité de matière organique fraîche sur les caractéristiques du processus de remaniement sédimentaire effectué par A. alba.Enfin, l’intensité du remaniement sédimentaire effectué par l’ensemble de la communauté benthique a été mesurée in-situ dans le Bassin d’Arcachon, à la fois dans un herbier à Zostera noltii et dans une zone de vase nue d’où celui-ci a disparu. Ceci a permis de déterminer les effets limitant de la présence d’herbier et de certaines espèces benthiques clés, sur le remaniement sédimentaire. / Sediment particle mixing, defined as the movements of sediment particles induced by benthic fauna, is one of the two components of bioturbation by benthic organisms. It is a key process of the ecological functioning in coastal areas. This manuscript presents an integrated study of sediment particle mixing process from the single sediment particle to the whole benthic community.The development of a new experimental approach, coupling high frequency acquisition of time series images of luminophores motions along thin aquaria glass walls, allowed for the direct measurement of elementary particle motions induced by the bivalve Abra alba. This constitutes the first experimental assessment of sediment particle mixing “fingerprints” in a marine invertebrate, according to the CTRW (Continuous Time Random Walk) model formulation.The deployment of this new approach also allowed for the determination of the control of water temperature and of fresh organic matter availability on sediment particle mixing induced by Abra alba. Moreover, the temporal (i.e., during 48h experiments) and spatial (i.e., over the whole section of the sediment column affected) dynamics of these effects were considered.At last, sediment particle mixing intensities induced by the whole benthic community were assessed in-situ in Arcachon Bay, within both a Zostera noltii meadow and a bare sediment mudflat where phanerogams were previously present. These results highlighted the restrictive effect of phanerogams themselves and of a restricted number of key benthic species, on sediment particle mixing.

Submitted by (edna.saturno@ufrpe.br) on 2017-02-14T12:00:59Z No. of bitstreams: 1 Isabela Bacalhau de Oliveira.pdf: 896610 bytes, checksum: 7b6da45a1ce490a0cec723d5d43865eb (MD5) / Made available in DSpace on 2017-02-14T12:00:59Z (GMT). No. of bitstreams: 1 Isabela Bacalhau de Oliveira.pdf: 896610 bytes, checksum: 7b6da45a1ce490a0cec723d5d43865eb (MD5) Previous issue date: 2010-02-23 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / This study aimed to analyze the spatial and temporal distribution of the clam Anomalocardia brasiliana and evaluate the stock recovery of this species in relation to the clam number and size after extraction in summer and winter in Mangue Seco, Pernambuco. In the first study, the beach (1800 m) was divided into three sections (S): S1 0 to 600m, S2 600 and 1200m and S3 1200 to 1800m. During this research a total of 1,016 specimens were collected in January (summer) and August (winter) of 2009, corresponding to 636 clams collected in the summer and 380 in the winter. The maximum density recorded in the summer period were 414.91 ± 82.48 ind.m-² at S3 and 323.49 ± 90.11 ind.m-² at S1, both were significantly different from S2 (156.12 ± 28.72 ind.m-²). In winter, the lowest densities were observed with 102.67 ± 5.07 ind.m-² and 122.37 ± 36.86 ind m-² for S1 and S2, respectively, both significantly different from S3 (296.76 ± 45.20 ind.m-²). The second study evaluated three treatments corresponding to an area of 18.75 m² each, where: the clams were removed manually by the fishers, collected using a fishing gear, and where there was no harvesting of clam. The sampling of the clams in these treatments was conducted in three moments: before extraction by fishers, after an hour and after 24 hours. Clams showed a smaller size (15.46 ± 0.86 mm) after manual collecting, but no significant difference in the size of the animals was found after the collection with the fishing gear (18.16 ± 0.92 mm). The number of the animals collected with size larger than 20 mm was greater than 80% in the winter and lower than 20% in the summer, without significant differences between the collection type tested for both seasons. The A. brasiliana showed a characteristic spatial distribution, with a greater abundance of juveniles during the summer while the adults were more abundant during the winter. The collection type and the extraction period did not influence the clam amount, as the stock of A. brasiliana in Mangue Seco is still quite dense and probably has the capacity to reconstitute itself after a period of 24 hours without clam extraction. The winter and summer seasons have a great influence on the abundance of A. brasiliana, with the largest number of animals within the recommended fishing size (> 20 mm) during the winter. / O presente estudo objetivou analisar a distribuição espaço-temporal do marisco Anomalocardia brasiliana e avaliar a recomposição do estoque desta espécie em relação ao número e ao tamanho dos mariscos capturados no verão e inverno na praia de Mangue Seco, Pernambuco. No primeiro estudo, a linha de praia (1.800 m) foi dividida em três trechos (T), sendo T1 de 0 a 600m, T2 de 600 a 1200m e T3 de 1200 a 1800m. Durante a pesquisa foram coletados um total de 1.016 espécimes nos meses de Janeiro (verão) e Agosto (inverno) de 2009. Desse total, 636 mariscos foram coletados no verão e 380 no inverno. Os valores máximos de densidade registrados no período de verão foram 414,91 ± 82,48 ind.m-² no T3 e 323,49 ± 90,11 no T1, sendo ambos diferentes significativamente do T2 (156,12 ± 28,72 ind.m-²). No inverno ocorreram os menores valores de densidade com 102,67 ± 5,07 ind.m-² e 122,37 ± 36,86 ind,m-² para T1 e T2, respectivamente, ambos diferindo significativamente do T3 (296,76 ± 45,20 ind.m-²). No segundo estudo foram avaliados três tratamentos correspondendo a uma área de 18,75m² cada, onde: os mariscos foram retirados manualmente pelas pescadoras, coletados com auxílio de um apetrecho de pesca, e onde não houve a coleta de mariscos. A amostragem dos mariscos nestes tratamentos foi realizada em três momentos: antes das coletas pelas marisqueiras, após uma hora e 24 horas após estas coletas. Foram observados mariscos com tamanho menor (15,46 ± 0,86 mm), após a coleta manual, sem diferença significativa entre o tamanho dos animais encontrados após a coleta com o apetrecho (18,16 ± 0,92 mm). A quantidade de animais capturados com tamanho maior que 20 mm foi superior a 80% no inverno, e inferior a 20 % no verão, sem diferença entre os tipos de coleta para ambas as estações. Os indivíduos da espécie A. brasiliana apresentaram uma distribuição espacial característica, com uma maior abundância de juvenis no período de verão enquanto que os adultos foram mais abundantes no período de inverno. O tipo de coleta avaliado e o momento da extração não influenciaram na quantidade de mariscos, visto que o estoque de A. brasiliana da praia de Mangue Seco ainda é bem denso e tendo capacidade de se recompor após um período de 24h da atividade de coleta pelas marisqueiras. As estações de inverno e verão exercem influencia na abundância de A. brasiliana, com maior quantidade de mariscos com tamanho recomendado para pesca (> 20 mm) no período do inverno.

Os objetivos do presente trabalho foram 1) avaliar a qualidade ambiental dos sedimentos ao redor do emissário submarino de efluentes petroquímicos tratados do Polo Atalaia, Sergipe e 2) fornecer elementos técnicos e científicos para aprimorar os estudos de biomonitoramento realizados na referida região. Para atingir estes objetivos foram realizadas análises granulométricas, geoquímicas (nutrientes, metais, metaloides, hidrocarbonetos) e da meiofauna (biocenoses e tanatocenoses de foraminíferos) de tréplicas de 19 amostras de sedimentos, coletadas ao redor do emissário (área experimental) e em uma área controle, situada a 5 km ao norte do emissário. Essas 57 amostras e seus respectivos dados abióticos foram cedidos pela Petrobras. A maior parte da área estudada é constituída por sedimentos lamoarenosos. Contudo, na área experimental há predominância dos termos lamosos, ricos em carbono orgânico e fósforo total. Na área controle, as porcentagens de areia muito fina são maiores e ocorrem elevados valores de nitrogênio total. As concentrações de Pb, Cr, Ni, Zn das duas áreas estudadas encontram-se abaixo do nível 1 do Conselho Nacional do Meio Ambiente (CONAMA) e ISQG (Interim Sediment Quality Guidelines), ou seja, os sedimentos não estão contaminados por esses elementos metálicos. Contudo, os valores de As estão entre os limites 1 e 2 do CONAMA e ISQG e PEL (probable effect level) em todas as estações, indicando que a biota pode ser afetada por esse elemento. Uma amostra (área experimental) apresenta valores de Cd, Cr e Hg entre os limites de ISQG e PEL e uma outra amostra (área controle) apresenta concentrações de Cr acima do nível 2 e PEL. Concentrações de hidrocarbonetos totais de petróleo (HTP), hidrocarbonetos resolvidos de petróleo (HRP) e de mistura complexa nãoresolvida (MCNR) são maiores na área experimental e em duas amostras da área controle. A composição da tanatocenose é muito diferente da biocenose, reforçando ao fato de que se deve utilizar principalmente organismos vivos em estudos de análise de impacto ambiental. O sedimento utilizado para a análise dos foraminíferos oscilou entre 20 e 110 cm3 para encontrar cerca de 100 indivíduos vivos. Percentual de silte e os valores da razão C/N, de B, Ba, Pb, Cu, Cd e Mn são os descritores ambientais significativos na distribuição da biocenose. A partir dos resultados obtidos conclui-se 1) a área controle utilizada pela Petrobras não é muito adequada, pois há indícios de impacto antropogênico, 2) a tanatocenose é substancialmente diferente da biocenose, portanto deve-se utilizar preferencialmente dados baseados em organismos vivos, 3) o valor de 20 cm3 de sedimento, estipulado pelo IBAMA, para a análise dos foraminíferos, é muito pequeno para se detectar indivíduos vivos em regiões impactadas. Portanto, para futuros estudos de biomonitoramento na região sugere-se escolha de ponto controle sem vestígio de impacto antropogênico, de preferência longe do rio Sergipe e que o volume de sedimentos para o estudo de foraminíferos vivos seja aumentado para no mínimo 50 cm³. / The objectives of this study were 1) to evaluate the environmental quality of sediments around the marine outfall of treated petrochemical effluents from Polo do Atalaia, Sergipe and 2) to provide technical and scientific information in order to improve biomonitoring studies carried out in that region. For these purposes the following analysis were performed: grain size, geochemical (nutrients, metals, metalloids, hydrocarbons), and meiofauna (foraminifera biocoenoses and thanatocoenoses) on replicates of 19 sediment samples collected from around the outfall (experimental area) and from a control area located 5 km north of the outfall. These 57 samples and their respective abiotic data were provided by Petrobras. Most of the studied area is composed of sandy silt sediments. However, in the experimental area there is a predominance of mud, rich in organic carbon and total phosphorus. In the control area, the percentages of very fine sand are higher and high values of total nitrogen occur. The concentrations of Pb, Cr, Ni, Zn on the two studied areas are below level 1 of the Conselho Nacional do Meio Ambiente (CONAMA) (National Council for the Environment) and ISQG (Interim Sediment Quality Guidelines), meaning that the sediments are not contaminated by these metallic elements. However, the values of As are between limits 1 and 2 of CONAMA and TEL and PEL (probable effect level) in all stations, indicating that the biota might be affected by this element. One of the samples (from the experimental area) presents values of Cd, Cr and Hg between the limits of ISQG and PEL and another sample (control area) has concentrations of Cr above level 2 and PEL. Concentrations of total petroleum hydrocarbons (TPH), resolved petroleum hydrocarbons (RPH) and unresolved complex mixtures (UCMs) are higher in the experimental area and in two samples from the control area. Thanatocoenoses composition is very different from biocoenoses composition, reinforcing the fact that mainly living organisms should be used in environmental impact analysis studies. The sediment used for the analysis of foraminifera oscillated between 20 and 110 cm³ to find around 100 living individuals. Percentage of silt and C/N ratio, B, Ba, Pb, Cu, Cd and Mn values are significant environmental descriptors in the distribution of biocoenoses. From the results obtained it is concluded: 1) The control area used by Petrobrás is not very adequate since there are evidences of anthropogenic impact, 2) Thanatocoenoses is substantially different from biocoenoses, and consequently, data based on living organisms should preferably be used, 3) the 20 cm³ sediment amount, stipulated by IBAMA for the analysis of foraminifera, is too small to detect live individuals in impacted regions. Therefore, it is suggested that a control point without trace of anthropogenic impact should be chosen for future biomonitoring studies in the region, preferably away from the Sergipe river. It is also suggested that the sediment volume for the study of live foraminifera be increased to a minimum of 50 cm³

O presente trabalho teve como objetivo realizar um estudo dos níveis de concentração e da distribuição das espécies metálicas Arsênio, Cádmio, Crômio, Cobre, Níquel e Chumbo em água, sedimento e nos organismos bentônicos dos rios e reservatórios pertencentes à Rede de Monitoramento de água e sedimento da CETESB, utilizando as técnicas analíticas de espectrometria de absorção atômica com atomização em forno de grafite (GF AAS) e espectrometria de emissão ótica (ICP OES). Paralelamente, avaliou-se a toxicidade da água e do sedimento para a bactéria Vibrio fischeri e a comunidade bentônica local. A caracterização multielementar (concentração total) dos sedimentos pela técnica de análise por ativação neutrônica (NAA) também foi realizada. Todas as metodologias analíticas foram avaliadas quanto à precisão, exatidão e os limites de detecção e quantificação foram calculados. Nas amostras de água, foram obtidas concentrações dos metais analisados inferiores aos limites estipulados pela Resolução 357/2005 do CONAMA para corpos de água classe 2. Os elementos estudados foram determinados, muitas vezes em concentrações que podem causar efeitos adversos à biota aquática, nas amostras de sedimento de dez dos treze pontos estudados, o que sugere que estes elementos tendem a se depositar nos sedimentos. Obtiveram-se concentrações dos elementos Cd, Cu, Pb e Ni em muitas das amostras de invertebrados bentônicos estudados, demonstrando que estes elementos podem ser absorvidos e bioacumulados nos organismos expostos aos sedimentos contaminados. A correlação entre as concentrações dos elementos no sedimento e nos organismos foi significativa e positiva. As correlações entre as concentrações dos elementos detectados e a massa dos organismos também foram significativas, porém negativas, ou seja, quanto menor a massa, maiores concentrações são esperadas. Não foi detectada toxicidade aguda nas amostras de água para o Vibrio fischeri, porém foi detectada na água intersticial de oito das treze amostras de sedimento testadas. Quanto à avaliação da comunidade bentônica, um ponto foi classificado como qualidade Ruim, oito como Regular e quatro como Boa, segundo critério adotado pela CETESB. Os resultados obtidos na análise de sedimentos por análise por ativação neutrônica demonstraram existir valores mais enriquecidos para os elementos As, Br, Cr, Hf, Ta, Th , U e Zn e os elementos terras raras (ETR) Ce, Eu, La, Nd, Sm, Tb e Yb em muitas das amostras analisadas indicando que pode estar havendo contribuição antrópica para esses elementos. / The present study analyzed concentration levels and distribution of As, Cd, Cr, Cu, Ni and Pb metallic species in water, sediment and aquatic organisms in rivers and reservoirs of a water and sediment quality monitoring network belonging to CETESB. For this purpose two analytical techniques Graphite Furnace Atomic Absorption Spectrometry (GF AAS) and Optical Emission Spectrometry with Inductively Coupled Plasma (ICP OES) were used. Water and sediment toxicity for Vibrio fischeri bacteria and the local benthic community were also evaluated. The multielemental characterization of sediments was undertaken by neutron activation analysis technique (NAA). All the analytical methodologies were evaluated for precision and accuracy, and detection and quantification limits calculated. In water samples metal concentrations were below the CONAMA 357/2005 resolution limits for class 2 water bodies. For sediment samples metal concentration levels that can cause adverse effects on aquatic biota were found in 10 of the 13 collection points studied. Metals Cd, Cu, Pb and Ni were detected in many invertebrate benthic organisms samples studied, indicating that these elements can be absorbed and bioaccumulated by these organisms when exposed to contaminated sediments. Significant correlations were found for metal concentrations in sediments and organisms. Negative correlations between detected element concentrations and weight of the sampled organisms were significant, so that the lower the weight the higher metal concentrations were measured. Acute toxicity for Vibrio fischeri was not observed for the water samples, but was detected in 8 of the 13 sediment interstitial water samples tested. As for the benthic community evaluation, one of the 13 points was rated as BAD quality, 8 rated as REGULAR and 4 as GOOD, using CETESB´s classification. The results for sediment samples by NAA showed higher enrichment values for As, Br, Cr, Hf, Ta, Th , U e Zn and rare earth elements (REE) Ce, Eu, La, Nd, Sm, Tb and Yb in many of the tested sediment samples indicating that there may be and anthropic contribution for these elements.

Alterações antrópicas em ecossistemas aquáticos exigem medidas de recuperação dos ambientes degradados, destacando-se projetos de restauração ecológica. Uma das etapas cruciais nesses projetos é a fase de monitoramento, sendo que o uso de macroinvertebrados como bioindicadores apresenta-se como uma importante ferramenta, por eles oferecerem vantagens sobre outros métodos de avaliação. Assim, o objetivo foi verificar os efeitos do assoreamento, antes e depois do rompimento da barragem de um pequeno reservatório em um riacho tropical, sobre a assembleia de macroinvertebrados aquáticos e avaliar a resposta da estrutura da comunidade após a implementação de um projeto de restauração ecológica. A pesquisa foi conduzida no riacho da Campininha, que passou por diversas alterações antrópicas, destacando-se aqui o rompimento de uma barragem e posteriormente a todos esses distúrbios pela implementação de um projeto de restauração ecológica. Foi realizada revisões da literatura para verificação da aplicabilidade da comunidade de macroinvertebrados como bioindicadores de sedimentação e na avaliação de projetos de restauração ecológica. Foram coletados dados pré-existentes antes e após o acidente e realizadas campanhas amostrais dois anos após o início da implantação do projeto de restauração. A comunidade de macroinvertebrados foi avaliada pela aplicação de índices ecológicos estruturais e funcionais alimentares e os resultados analisados por meio de ferramentas de estatística uni e multivariada. A análise da literatura mostrou que a aplicação de índices ecológicos tradicionais, tais como riqueza e diversidade, podem não ser sensíveis o suficiente para indicar impactos relacionados à sedimentação e implementação de projetos de restauração ecológica. Sendo, assim, necessária a utilização de índices que considerem a composição da comunidade, a sensibilidade dos organismos e a utilização de grupos funcionais alimentares e suas relações. Antes do rompimento da barragem a comunidade de macroinvertebrados já apresentava-se empobrecida pelo assoreamento do trecho represado e do canal fluvial. O rompimento da estrutura implicou na perda de importantes grupos e na mudança da composição da comunidade, além da perda de grupos funcionais alimentares, com consequente perda de funções ambientais. Após a implementação do projeto de restauração houve o aparecimento de 20 famílias, no entanto, os índices ecológicos tradicionais não foram capazes de identificar mudanças na comunidade. Métricas de composição e de grupos alimentares apontaram para um processo de recuperação da área. As características do sedimento tiveram um alto poder explicativo da comunidade, mostrando que a recuperação do habitat bentônico é um dos fatores que leva à uma melhor resposta da comunidade, mesmo esse não tendo sido o foco da aplicação do projeto de restauração avaliado. O relativo curto período transcorrido após a implementação do projeto já foi suficiente para indicar melhorias na qualidade ambiental. Tais resultados contrapõe a maioria dos estudos verificados na revisão da literatura. No entanto destaca-se que os mesmos foram conduzidos principalmente em ambientes temperados, indicando que em ambientes tropicais a dinâmica de recuperação é diferente. Assim aponta-se a necessidade da intensificação da implantação de projetos e monitoramento dos mesmos para a criação de um arcabouço teórico para auxiliar gestores e projetistas na sua elaboração. / Anthropic alterations in aquatic ecosystems demand the implementation of recuperation actions, highlighting ecological restoration projects. The monitoring is an important step to these projects, and the macroinvertebrates application as bioindicators is an important tool, because they are advantageous in comparison to another assessment methods. Thus, the goal was verify the effects of silting, and dam rupture in macroinvertebrate community, in a tropical stream, and assess the answer to an ecological restoration project implementation. The research was conducted in the Campininha stream, that was impacted by anthropic alterations, featured a dam rupture and after all this disturbances was implemented an ecological restoration project. A literature review was conducted to verification of the applicability of macroinvertebrates as bioindicators of silting and in ecological restoration projects assessment. Data was collected before and after the dam rupture, and samplings were done two years after the project implementation began. The macroinvertebrates community was assessed by application of structural and functional feeding indexes and the results analyzed by univariate and multivariate statistic. The literature review showed that the traditional indexes application may be not sensible to indicate impacts related to silting and ecological restoration projects implementation, and it is necessary the utilization of indexes that consider the community composition, organisms sensibility and functional feeding groups and your relations. Before the dam rupture, the macroinvertebrate community was already poor by the silting of the lake and fluvial channel. The dam rupture leaded to the loss of important groups and in the change of the macroinvertebrate community composition, also loss of functional feeding groups and consequently environmental functions. After the ecological restoration project implementation were found another 20 families, however, the traditional indexes were not sensible to indicate changes in macroinvertebrates community. Composition and functional feeding groups indexes showed the stream recuperation process. The sediment characteristics had a community high explanative power showing that the benthic habitat recovery is a factor that guide to a better community answer, even this was not the goal of the restoration project application. The relative short time after the project implementation was enough to point a environmental quality recovery, in contrast with the literature review. However the most studies analyzed was conducted in temperate environments, showing that in tropical environments the recovery dynamics is different. Thus, is necessary a intensification of restoration projects implementation and monitoring to a creation of data bases to guide managers and professionals responsible by the projects elaboration in decision make.

Macroinvertébrés benthiques et hyphomycètes aquatiques représentent une part importante de la biocénose des cours d'eau de tête de bassin. D'un point de vue écologique, ils participent au recyclage du carbone organique à travers leur implication dans certaines fonctions écosystémiques telles que la décomposition de la litière. Ce processus est vital pour les cours d'eau forestiers ou bordés de ripisylve. Si celui-ci est aujourd'hui bien étudié en milieu tempéré, la contribution des deux types de décomposeurs (champignons et invertébrés) reste mal comprise en milieu tropical du fait de la variabilité éco-géographique prononcée de ce biome. Cette thèse qui concernait deux régions de Guinée jusque-là inexplorées, la Guinée Forestière et la Haute-Guinée, avait un double objectif. D'une part, il s'agissait de documenter la diversité taxonomique et trophique des communautés de macroinvertébrés benthiques et la composition des assemblages d'hyphomycètes aquatiques. D'autre part, la thèse visait à caractériser le processus de décomposition de la litière et les communautés de décomposeurs associés, notamment dans une perspective de quantification de la contribution de chacun des deux groupes. Cette dernière étude répondait ainsi à l'hypothèse d'une plus grande importance des décomposeurs fongiques aux faibles latitudes en comparaison des latitudes élevées où l'activité des décomposeurs invertébrés est prépondérante. Une étude exploratoire menée sur 12 rivières a révélé une diversité de 45 taxons correspondant à la faune macrobenthique de l'Afrique de l'Ouest, et incluant un nouveau taxon de crustacé pour la Guinée. Les deux régions d'étude se différenciaient dans la composition des groupes trophiques : les déchiqueteurs, essentiellement représentés par les crevettes, étaient dominants dans les cours d'eau de Guinée Forestière, et les racleurs abondaient dans ceux de savane en Haute-Guinée, caractérisés par une faible densité de la végétation riveraine. Par ailleurs, les prélèvements d'eau et d'écume ont décelé la présence de 29 espèces d'hyphomycètes aquatiques. A ces espèces viennent s'ajouter 9 autres identifiées sur les litières lors des expériences de décomposition portant ainsi à 38 le nombre d'espèces identifiées pour la Guinée au cours de cette thèse, dont 12 sont nouvelles pour le continent africain. Les expériences menées dans les deux régions montrent une décomposition rapide, probablement en partie liée à la forte teneur en nutriments des litières, et une faible diversité des décomposeurs associés. Dans les deux cours d'eau temporaires de savane étudiés, les invertébrés associés aux litières étaient absents. Comme une compensation, l'activité des champignons était accrue, lesquels accumulaient une biomasse mycélienne très élevée. La présence de déchiqueteurs potentiels a été notée dans les deux cours d'eau étudiés de Guinée Forestière mais leurs densités étaient faibles. Dans les deux régions, la différence entre les taux de décomposition totale et microbienne était faible, soulignant une importance minime des invertébrés et un rôle majeur des champignons et confirmant notre hypothèse. Il a également été montré au cours de cette thèse que les asséchements des cours d'eau avaient peu d'influence sur le taux de décomposition de la litière. Par ailleurs, une faible diversité des organismes décomposeurs, invertébrés et hyphomycètes aquatiques, ne semble pas altérer le processus de décomposition. Ainsi les lois générales basées sur les facteurs déterminants de la décomposition des litières tels que la qualité du matériel végétal ou un rôle équilibré entre les deux types de décomposeur, ne sont pas nécessairement transposables aux milieux tropicaux. Enfin, les résultats de cette thèse suggèrent que les conséquences du changement climatique sur le recyclage du carbone organique dans les eaux d'Afrique de l'Ouest, région prédite comme très affectée, pourraient être tempérées par la prédominance d'organismes peu vulnérables. / Benthic macroinvertebrates and aquatic hyphomycetes are major components of the biocenosis of headwater ecosystems. Both of them contribute to essential ecosystem functions like leaf litter decomposition as part of the organic carbon cycling. Such a process is vital for woodland streams or riparian tree-lined rivers. While this process is very well documented for temperate regions, the contribution of both types of decomposers, i.e. fungi and invertebrates, remains poorly understood in the tropics partly due to the large ecogeographic variability prevailing in this biome. The present thesis dealt with two unexplored regions of Guinea (Forested Guinea and Upper Guinea) and was motivated by a double objective. First, it aimed at documenting the taxonomic and trophic diversity of benthic macroinvertebrate communities together with the composition of aquatic hyphomycete assemblages. The second objective was to characterize leaf litter decomposition and leaf-associated decomposers, particularly in the perspective of quantifying the relative contribution of both decomposer types. The latter study specifically addressed the hypothesis of a greater importance of fungal decomposers at low latitudes compared to higher latitudes where the activity of invertebrate decomposers prevails. An exploratory survey conducted in 12 streams revealed the occurrence of 45 taxa belonging to the macrobenthic fauna of West Africa and including a new genus, Asellus, which completes the list of known crustacean taxa of Guinea. Both regions differed in the importance of the Functional Feeding Groups: shredders, mainly consisting in shrimps, dominated in Forested Guinea whereas scrapers were abundant in the savannah streams of Upper Guinea, which were characterized by scarce riparian vegetation. In stream water and foam, a total of 29 species of aquatic hyphomycetes were identified. Moreover, 9 additional species were found as sporulating on leaves in litter decomposition experiments, which led to a total of 38 species for Guinea with 12 being new for Africa. This thesis thus substantially expanded the list of known species for Africa. The experiments carried out in both regions showed a fast leaf litter decomposition, likely partly due to the high nutrient contents in litter, and a low diversity of leaf-associated decomposers. In the two studied temporary savannah streams, no leaf-associated invertebrates occurred. The latter was apparently compensated by a strong fungal activity as illustrated by very high mycelial biomass accrual. In the two studied streams of Forested Guinea, the occurrence of Caridina africana (Atyidae crustacean) as potential shredder could explain the leaf mass loss due to invertebrates, even though their density remained low. In both regions, the discrepancies between total and microbial decomposition rates were weak, highlighting a minute contribution of invertebrates and a major role of fungi thus supporting our hypothesis. The present results suggest that droughts resulted in low effects on the rate of leaf decomposition. Furthermore, leaf decomposition did not seem to be affected by the poor diversity of decomposers, i.e. invertebrates and aquatic hyphomycetes. Overall, the principles of leaf decomposition control by factors like the quality of leaf litter and the balanced involvement of both decomposer types do not appear to be fully applicable to tropical environments. Finally, the findings of this thesis suggest that the consequences of climatic change on the cycling of organic carbon in the aquatic ecosystems of West Africa, i.e. a region predicted to be particularly affected, could be mitigated by the dominance of organisms exhibiting a low vulnerability.

Using a towed underwater video camera system, benthic habitats were classified along transects in a popular offshore fishing area on the West Florida Shelf (WFS) known as “The Elbow.” Additionally, high resolution multibeam bathymetry and co-registered backscatter data were collected for the entire study area. Using these data, full coverage geologic and biotic habitat maps were developed using both unsupervised and supervised statistical classification methodologies. The unsupervised methodology used was k-means clustering, and the supervised methodology used a random forest algorithm. The two methods produced broadly similar results; however, the supervised methodology outperformed the unsupervised methodology. The results of the supervised classification demonstrated “substantial agreement” (κ>0.6) between observations and predictions for both geologic and biotic habitat, while the results of the unsupervised classification demonstrated “moderate agreement” (κ>0.4) between observations and predictions for both geologic and biotic habitat. Comparisons were made with the previously existing map for this area created by Florida Fish and Wildlife Conservation Commission’s Fish and Wildlife Research Institute (FWC-FWRI). Some features are distinguishable in both maps, but the FWC-FWRI map shows a greater extent of low relief hard bottom features than was predicted in our habitat maps. The areas predicted as low relief hard-bottom by FWC-FWRI often coincide with areas of higher uncertainty in the supervised map of geologic habitat from this study, but even when compared with ground-truth points from the towed video rather than predictions, the low relief hard bottom in FWC-FWRI’s map still corresponds to what was identified as sand in the video 73% of the time. The higher uncertainty might be a result of the presence of mixed habitats, differing morphology of hard-bottom, or the presence of sand intermixed with gravel or debris. More ground-truth samples should be taken in these areas to increase the confidence of these classifications and resolve discrepancies between the two maps. Data from the towed video system were also used to assess differences in fish communities among habitat types and to calculate habitat-specific densities for each taxa. Fish communities were found to significantly differ between soft and hard bottom habitats as well as among the hard-bottom habitats with different vertical relief (flat hard-bottom vs more steeply sloping areas). Additionally, significant differences were found between the fish communities in habitats with attached fauna such as sponges and gorgonians, and areas without attached fauna; however, attached fauna require rock to attach to and the rock habitats rarely lacked attached fauna, so this difference may just reflect the difference between fish communities in sand and rock habitats without the consideration of vertical relief. Moreover, the species driving the differences in the fish communities were identified. Fish were more likely to be present and assemblages were more species rich in more complex habitats (rockier, higher relief, presence of attached fauna). Habitat specific densities were calculated for each species, and general trends are discussed. Lastly the habitat-specific densities were extrapolated to the total area of habitat type (sand vs rock) as predicted by the supervised geologic habitat map. There is predicted to be approximately 111,000 fish (95% CI [67015, 169405]) within the study area based on this method, with ~47,000 (~43%) predicted to be within the sand habitat and ~64,000 (~57%) in the rock habitat. This demonstrates the potential of offshore rocky reefs as “critical habitats” for demersal fish in the offshore environment as rock accounts for just 4% of the study area but is expected to contain over half of the total abundance. The value of sand habitats is also shown, as due to their large area they are able to contribute substantially to the total number of fish despite sustaining comparatively low densities.

Several hypotheses from community ecology were tested using habitat and diet patterns for six catostomid fishes of the Assiniboine River, Manitoba. Specifically, I examined expected assemblage patterns based on the equilibrium-nonequilibrium continuum that are based on competition as a structuring mechanism. The catostomid assemblage showed characteristics of both equilibrium and nonequilibrium assemblages. Habitat utilization was not proportional to habitat availability for depth, velocity, and substrate indicating habitat selection occurs. These patterns are influenced by the distributions of soft Lake Agassiz deposits and harder glacial till-plain habitats and therefore localized. Species co-occurred in relation to abundance indicating negative associations assumed in competition-based theory were not apparent. In addition, species from the same subfamily co-occurred more often than expected by chance, indicating positive within-group comparisons, except for silver redhorse, which did not co-occur differently than random. Species from the same feeding group co-occur most frequently with conspecifics, indicating species have specific habitat patterns. Benthic invertebrate distributions and fish distributions were positively correlated with fish diet. Within-feeding-group comparisons indicated species that co-occurred frequently consumed the same food items, but showed subtle differences in abundance of diet items. The most common diet items varied among white sucker, silver redhorse, golden redhorse, and shorthead redhorse, indicating that, although these species co-occur, subtle differences in feeding behavior may account for differences in relative abundance and frequency of diet items. Quillback and bigmouth buffalo shared a few core food items, but co-occurred infrequently. Inter-specific interactions showed silver redhorse diets were a subset of white sucker diets, white sucker diets were a subset of golden redhorse diets, shorthead redhorse diets were a subset of silver redhorse and golden redhorse diets, while bigmouth buffalo diets were a subset of quillback diets. Lower richness and prevalence of organisms in quillback and bigmouth buffalo diets were due to highly aggregated prey items. Benthic invertebrate distributions were aggregated and dependent on the predictable patterns of substrates, based on hydraulic sorting in the meandering along the river. Large-scale redundancy of species-habitat associations was correlated with historical (phylogenetic) or adaptive (morphological) constraints on habitat selection. Stream habitats are constrained by regional factors of slope and sediments, but also determined by stable, repetitive and predictable local processes of erosion, transport, and deposition (meandering). The fish-habitat associations of catostomids in the Assiniboine River provide an example of interaction between the abundance of the component species, the phylogenetic constraints on the niche, and the deterministic nature of the spatial distribution of habitats. Within-feeding-group pairs showed that local habitat overlap is positively correlated with geographic overlap, while local diet overlap is negatively correlated with geographic overlap. Two species pairs (silver redhorse and golden redhorse and bigmouth buffalo and quillback) were concluded to have symmetric overlaps at the geographic scale and stable interactions. Using the functional niche concept ecological theory provides a link between ecology and biogeography of sympatric species. The multi-analytical approaches in this study provide insights into the structuring of north temperate prairie river fish communities, through hypothesis testing and correlation that have application beyond Prairie Rivers. / October 2005

The effect of environmental modification of predator sensory abilities remains largely unknown, despite the importance of predators to ecosystem function. I conducted a series of experiments to investigate effects of hydrodynamics on the chemosensory search behavior and foraging success of two species of marine gastropods, knobbed whelks (