Biliverdin IXα is a green bile pigment produced by enzymatic cleavage of a tetrapyrrole ring of heme by heme oxygenase. While biliverdin IXα is emerging as an effective cytoprotectant, the conventional method for producing biliverdin IXα by chemical conversion of animal bile is not suitable for large scale production. A novel scalable production method was pursued via bacterial fermentation. Recombinant Escherichia coli strains were obtained by sequence optimization and plasmid transformation of a cyanobacterial heme oxygenase gene. Further strain development was done by plasmid overexpression of a native E. coli flavodoxin gene as a possible electron donor for heterogeneous heme oxygenase. The resulting strains were grown in a fed-batch culture system optimized for biliverdin IXα production. Syringomycin E is a lipodepsinonapeptide produced by certain strains of Pseudomonas syringae pv. syringae by nonribosomal peptide synthesis. Though syringomycin E had been considered a phytotoxin in the past, recent research results indicate that syringomycin E is a natural fungicide that is not toxic to animals and plants. Syringomycin E is a potential fungicide especially for use in the organic agriculture sector. New strains of P. syringae pv. syringae were isolated through ultraviolet mutagenesis and screenings for enhanced capability to produce syringomycin E especially under agitated conditions. Fermentative production was conducted in a newly formulated medium and the product was purified through a large scale chromatography system using organic-compatible solvents. Purified syringomycin E was tested on cucumber seeds to examine its antifungal activity against a soil-borne pathogen Pythium ultimum. Syringomycin E was able to inhibit Pythium infection and protected seeds and seedlings without developing disease symptoms. This dissertation research showed scalable production of two natural products, biliverdin IXα and syringomycin E in bacterial platforms. Strain development by gene recombination and mutation was done to obtain bacterial strains capable of overproducing desired metabolites. The resulting strains were grown in fermenters to maximize the yields under agitated conditions. Monitoring growth parameters and medium modifications were critical to achieve large scale production.

Unlike most other vertebrates, many species in the genus Etheostoma do not utilize structural refraction to display blue or green color. Instead, blue and green mating coloration exhibited by male rainbow darters (E. caeruleum) and male greenside darters (E. blennioides) results from the presence of true chromoprotein pigments. This study was conducted in order to extract, purify, characterize, and compare these novel pigments. Pigments were extracted in aqueous buffer and partially purified by ammonium sulfate fractionation and gel filtration chromatography. Final purification consisted of preparative non-denaturing polyacrylamide gel electrophoresis for E. caeruleum and hydroxyapatite chromatography for E. blennioides. Isolation of the chromophore was accomplished using acetone precipitation. The chromophore is the same in both species and is believed to be biliverdin. The protein component differs between the species and appears to have a greater number of subunits in E. blennioides. Binding of the protein to the chromophore amplifies the absorbance in the visible region and causes spectral tuning of the absorbance profile of the chromophore, with slight differences between species. In E. caeruleum, the chromoprotein pigment has a lambda max of 683 nm and transmits light at slightly shorter wavelengths, causing it to appear blue. In E. blennioides, the chromoprotein pigment has a lambda max of 696 nm and transmits light at slightly longer wavelengths, causing it to appear green. This work has shown that the protein component, not the chromophore, is responsible for the difference in hue between these two pigments. Future work will involve obtaining amino acid sequences for the protein component of the pigments and ultimately sequencing the gene coding for these proteins in darters. / Bayer School of Natural and Environmental Sciences; / Environmental Science and Management (ESM) / MS; / Thesis;

No description available.

Labrus bergylta (ballan wrasse) have recently emerged as a key resource to aquaculture through proven efficacy in controlling infestations of sea lice (Leclercq et al., 2014a). However, due to complex ecology, and a complete lack of sexual dimorphism gender identification endures as a key restriction to optimising broodstock management therefore male selection and establishing optimal sex ratios is difficult (Talbot et al., 2012). L. bergylta, are noted to demonstrate unusually coloured plasma ranging in hue from green to blue with the haem catabolite biliverdin established as the causal pigment in the majority of cases (Abolins, 1961). As most vertebrates excrete biliverdin, or rapidly metabolise it to prevent toxicity, accumulation to such excess is a phenomenon which merits attention. Notably, correlation between plasma biliverdin and gender has been reported in some Labridae. Although patterns vary between species, the abundance or characteristics were such that sexual identity could be established (Gagnon, 2006). Pigment analysis was therefore proposed as a potential sex-marker in L. bergylta. In the initial experimental phase (Chapter 3), the ultimate aim was to isolate and identify the blue pigment from L. bergylta plasma, and to develop a method of quantification. The initial phase confirmed the target pigment was biliverdin IXα by visible spectroscopy, TLC, HPLC, MSMS, and a series of reactions. Following this, a protocol was developed (Chapter 2) to quantify the pigment. This method was applied accross plasma sampled from four geographically distinct wild populations with established biometrics including age, mass, length, gender and external phenotype. Subsequent analysis revealed that although pigment abundance did not vary relative to ontogeny, and there was no difference in concentration between the binary genders, plasma biliverdin was depleted in individuals undergoing sex change. Although this conclusion was complicated by significant biliverdin variation relative to origin and phenotype, which were interrelated based on relative distributions across populations, further analysis of plasma pigment in related species identified that biliverdin accumulation was associated with protogynous species. Considering the anti-oxidant capacity of biliverdin and other potentially relevant functions, this was indicative of association with the tissue remodelling processes which accompany inversion. During Chapter 3 it was noted that the biliverdin appeared tightly bound to a protein moiety. Based on the hypothesis that the pigment was actively managed and accumulated in L. bergylta plasma by this association, the next phase of experiments (Chapter 4) was an exploration of biliverdin and its binding protein in L. bergylta. The experiments revealed plasma biliverdin comigrated with the protein such that it was depleted from solution at the same rate indicating that all of the pigment was associated. Subsequent electrophoretic experiments using the fractionation products supported this, and UV fluourescence identified fragments of interest in the 25-28 kDa region. To confirm observations from the previous cross species comparison, the study was similarly expanded to include other Labrini. This revealed that although the 25 kDa band was common to all species, and genders, the 28 kDa band was collocated with the protogynous, and as such hyperbiliverdinaemic species. The 28 kDa band was sequenced using MSMS, and was identified as similar to the lipocalin Apolipoprotein A1. In combination with the properties of biliverdin, and considering that ApoA1 is analogous to serum albumin in many telesots, this supported the chromoprotein association as the main mechanism of biliverdin accumulation in such species. Further to the proposed function of biliverdin with inversion processes, and considering relevant literature, the active properties of ApoA1 suggested additional associations with prolonged altered states of metabolism which considering the ecology of L. bergylta would include gender transition, overwintering torpor and prolonged micronutrient limitation, all of which occur simultaneously. Other potential roles include modulating inflammatory responses, inhibiting pathogenic incursions and acting as an external point of contact innate immune response. From this, it was concluded that the data fully supported the previous assertions of biliverdins relevance in protogynous species, and identified a number of properties which could be of great interest to the industry in terms of welfare. The final experimental phase (Chapter 5) had two main aims. The first was to establish whether protogynous inversion could be artificially induced in L. bergylta as a means of generating male fish, and whether size had any effect on the process. The second was then to utilise controlled induction for tracking biliverdin mobilisation across the process to test the previous hypothesis. The preliminary trial demonstrated that both androgen inhibition and non-aromatisable testosterone could stimulate inversion in female L. bergylta. From this, the second trial then determined that although there was a dose dependant effect in that high androgen dosages appeared to compress the inversion process, relative size was not a factor. Gonad histology was used to create a unified scale of protogynous transition which could be expressed as a gradient to structure the biliverdin analysis. Although the biliverdin data demonstrated cryptic trends at the higher resolution gender scales, when the endpoint was condensed back to the binary gender scale employed previously (Chapter 3), the prior assertion of depletion during transition, and therefore the association with sex change associated tissue remodelling was supported. Ultimately this thesis revealed links between the biliverdin macromolecule and the highly unusual metabolic and physiological demands of gender transition in sequentially protogynous hermaphroditic temperate wrasse species.

O Trypanosoma cruzi, agente etiológico da doença de Chagas, possui um ciclo de vida complexo, deve lidar com diversas condições do ambiente e depende dos hospedeiros para suprir suas necessidades nutricionais. Uma delas é a necessidade de captar a molécula de heme (Fe-protoporfirina IX) que será utilizada como fator de crescimento. Os mecanismos envolvendo o metabolismo de heme são cruciais para a sobrevivência do T. cruzi pois o parasito não possui várias enzimas de biossíntese dessa porfirina e o heme livre pode apresentar citotoxicidade para célula. Na tentativa de perseguir o destino final do heme no parasito, nós estudamos essa via inexplorada no T. cruzi. Nessa tese, nós demonstramos que epimastigotas cultivados com heme, produziram os compostos, α-meso hidroxiheme, verdoheme e biliverdina (identificados por HPLC acoplado á espectrofotômetria). Além disso, nós observamos através de análise dos extratos de epimastigotas no espectrômetro de massas (LQT Orbitrap), espécies iônicas de m/z 583,4 e m/z 619,3. A fragmentação subsequente desses íons originaram espécies filhas típicas das moléculas de biliverdina e verdoheme, respectivamente. Nós observamos também, espécies iônicas de m/z 1397,4 e m/z 1135,4. A fragmentação dessas espécies produziram íons, sendo um deles com a mesma massa molecular de heme (m/z 616,3). Essa espécie iônica por sua vez, gerou fragmentos iônicos idênticos a uma molécula de heme, confirmando que esses intermediários são produtos da modificação da porfirina. Baseado nesses resultados, nós propomos um modelo onde o catabolismo de heme em T. cruzi, envolveria a conjugação da bis(glutationil)spermina, um derivado da tripanotiona presente em tripanossomatídeos, à porfirina (m/z 1137,4), seguido da remoção de dois resíduos de ácidos glutâmicos (m/z 1135,4). Embora o significado bioquímico e fisiológico da adição desse resíduo tiol na molécula de heme ainda é pouco compreendido, alguns trabalhos demonstram a abilidade desses compostos em ligar na porfirina, sem contar também, que esse heme conjugado poderia resultar em uma forma efetiva de prevenção de danos à membrana e a célula ocasionados pelo acúmulo de heme livre. Em conjunto, esses resultados fornecem novas abordagens do metabolismo de heme em T. cruzi, revelando possíveis alvos de intervenção quimioterápica futuros. Nossa proposta está direcionada para uma via ativa de catabolismo de heme que inclui a adição de grupos tiol (derivado da tripanotiona) à heme e a clivagem do anel porfirínico originando a molécula de biliverdina. / Trypanosoma cruzi, the causal agent of Chagas disease, has a complex life cycle and they must cope with diverse environmental conditions and depends on hosts for its nutritional needs. One of the nutritional characteristic is that they need a heme compound (Fe-protoporphyrin IX) as a growth factor. The mechanisms involved in these processes are crucial for their survival mainly because of trypanosomatids lack of the complete heme biosynthetic pathway and the cytotoxic activity of free heme. Following the fate of this porphyrin in the parasite we studied this missing pathway in T. cruzi. Here, we show that epimastigotes cultivated with heme yielded the compounds, α-meso hydroxyheme, verdoheme and biliverdin (as determined by HPLC with diode array detector). Furthermore, we observed ion species of m/z 583.4 and m/z 619.3 from epimastigotes extracts detected by direct infusion on LQT Orbitrap platform. A tipical biliverdin and verdoheme doughter-ion species were generated by m/z 583.4 and m/z 619.3 fragmentations, respectively. We also observed an ion species at m/z 1397.4 and m/z 1135. The subsequent fragmentation of this species produced a daughter-ions whose one with the same molecular mass as heme (m/z 616.4). This species, in turn, generated daughter species identical to an authentic heme, confirming that these intermediates were modified heme products. Based on these findings, we propose that heme catabolism in T. cruzi involves a additions of Bis(glutathionyl)spermine, a low molecular mass thiols occurring in trypanosomatids, to heme (m/z 1397.4), followed by removal of the glutamic residues (m/z 1135). Although the biochemical and physiological significance of the addition of thiol residues to heme molecule is underexplored, some works, already demonstrated their ability to bind heme and also this modified heme may resulting in the effective prevention of membrane damage and cytotoxicity by the heme accumulation. Taken together, these results offer new insights into heme metabolism in T. cruzi, revealing potential future therapeutic targets. We propose an active heme catabolism pathway that includes a trypanotione derivate additions and cleavage of the heme porphyring ring to biliverdin.

O Trypanosoma cruzi, agente etiológico da doença de Chagas, possui um ciclo de vida complexo, deve lidar com diversas condições do ambiente e depende dos hospedeiros para suprir suas necessidades nutricionais. Uma delas é a necessidade de captar a molécula de heme (Fe-protoporfirina IX) que será utilizada como fator de crescimento. Os mecanismos envolvendo o metabolismo de heme são cruciais para a sobrevivência do T. cruzi pois o parasito não possui várias enzimas de biossíntese dessa porfirina e o heme livre pode apresentar citotoxicidade para célula. Na tentativa de perseguir o destino final do heme no parasito, nós estudamos essa via inexplorada no T. cruzi. Nessa tese, nós demonstramos que epimastigotas cultivados com heme, produziram os compostos, α-meso hidroxiheme, verdoheme e biliverdina (identificados por HPLC acoplado á espectrofotômetria). Além disso, nós observamos através de análise dos extratos de epimastigotas no espectrômetro de massas (LQT Orbitrap), espécies iônicas de m/z 583,4 e m/z 619,3. A fragmentação subsequente desses íons originaram espécies filhas típicas das moléculas de biliverdina e verdoheme, respectivamente. Nós observamos também, espécies iônicas de m/z 1397,4 e m/z 1135,4. A fragmentação dessas espécies produziram íons, sendo um deles com a mesma massa molecular de heme (m/z 616,3). Essa espécie iônica por sua vez, gerou fragmentos iônicos idênticos a uma molécula de heme, confirmando que esses intermediários são produtos da modificação da porfirina. Baseado nesses resultados, nós propomos um modelo onde o catabolismo de heme em T. cruzi, envolveria a conjugação da bis(glutationil)spermina, um derivado da tripanotiona presente em tripanossomatídeos, à porfirina (m/z 1137,4), seguido da remoção de dois resíduos de ácidos glutâmicos (m/z 1135,4). Embora o significado bioquímico e fisiológico da adição desse resíduo tiol na molécula de heme ainda é pouco compreendido, alguns trabalhos demonstram a abilidade desses compostos em ligar na porfirina, sem contar também, que esse heme conjugado poderia resultar em uma forma efetiva de prevenção de danos à membrana e a célula ocasionados pelo acúmulo de heme livre. Em conjunto, esses resultados fornecem novas abordagens do metabolismo de heme em T. cruzi, revelando possíveis alvos de intervenção quimioterápica futuros. Nossa proposta está direcionada para uma via ativa de catabolismo de heme que inclui a adição de grupos tiol (derivado da tripanotiona) à heme e a clivagem do anel porfirínico originando a molécula de biliverdina. / Trypanosoma cruzi, the causal agent of Chagas disease, has a complex life cycle and they must cope with diverse environmental conditions and depends on hosts for its nutritional needs. One of the nutritional characteristic is that they need a heme compound (Fe-protoporphyrin IX) as a growth factor. The mechanisms involved in these processes are crucial for their survival mainly because of trypanosomatids lack of the complete heme biosynthetic pathway and the cytotoxic activity of free heme. Following the fate of this porphyrin in the parasite we studied this missing pathway in T. cruzi. Here, we show that epimastigotes cultivated with heme yielded the compounds, α-meso hydroxyheme, verdoheme and biliverdin (as determined by HPLC with diode array detector). Furthermore, we observed ion species of m/z 583.4 and m/z 619.3 from epimastigotes extracts detected by direct infusion on LQT Orbitrap platform. A tipical biliverdin and verdoheme doughter-ion species were generated by m/z 583.4 and m/z 619.3 fragmentations, respectively. We also observed an ion species at m/z 1397.4 and m/z 1135. The subsequent fragmentation of this species produced a daughter-ions whose one with the same molecular mass as heme (m/z 616.4). This species, in turn, generated daughter species identical to an authentic heme, confirming that these intermediates were modified heme products. Based on these findings, we propose that heme catabolism in T. cruzi involves a additions of Bis(glutathionyl)spermine, a low molecular mass thiols occurring in trypanosomatids, to heme (m/z 1397.4), followed by removal of the glutamic residues (m/z 1135). Although the biochemical and physiological significance of the addition of thiol residues to heme molecule is underexplored, some works, already demonstrated their ability to bind heme and also this modified heme may resulting in the effective prevention of membrane damage and cytotoxicity by the heme accumulation. Taken together, these results offer new insights into heme metabolism in T. cruzi, revealing potential future therapeutic targets. We propose an active heme catabolism pathway that includes a trypanotione derivate additions and cleavage of the heme porphyring ring to biliverdin.

A malária é causada por parasitas Plasmodium falciparum, e embora vários aspectos ainda sejam desconhecidos, é sabido que a regulação do ciclo intraeritrocítico é crítica para a compreensão do ciclo celular e patogênese. A melatonina modula o ciclo de P. falciparum promovendo a sincronização, mas, o mecanismo de transdução de sinal é parcialmente caracterizado, envolvendo variações citosólicas de cálcio, AMPc e ativação da PKA. Modificações pós-traducionais participam na via de sinalização, e diversas proteínas quinase podem estar envolvidas na sinalização por melatonina. eIF2α fosforilado é capaz de ativar a tradução de mRNAs em resposta a situações desfavoráveis. O genoma de P. falciparum codifica três quinases cujo substrato é eIF2α: PfeIK1, PfeIK2 e PfPK4. Investigamos o papel da PfeIK1 na via de transdução de sinal de melatonina usando cepas nocaute para PfeIK1. Além disso, os efeitos de metabólitos da degradação do heme sobre a fosforilação de eIF2α. Sugerimos que o mecanismo de fosforilação e defosforilação de eIF2α possam ser relevantes para a resposta do parasita a hemina ou biliverdina. Nossos dados indicam a PfeIK1, juntamente com a PfK7 e PKA, como quinases-chaves no controle do desenvolvimento durante o ciclo intraeritrocítico. / Malaria is caused by Plasmodium falciparum parasites, and although some aspects are still unknown, its established that the intraerythrocytic cycle regulation is critic for understanding the cell cycle and pathogenesis of the parasite. Melatonin modulates the cycle of P. falciparum promoting synchronization; however, the signal transduction mechanism is partially characterized, and it contains cytosolic variations of calcium, AMPc and PKA activation. Post-translational modifications participate in this signal pathway, and several kinase proteins may be involved in melatonin signaling pathway. Phosphorylated eIF2α is able to activate mRNAs translation in stress conditions. The genome of P. falciparum encodes three kinases whose substrate is eIF2α: PfeIK1, PfeIK2 e PfPK4. We investigate the role of PfeIK1 in melatonin signaling pathway by using knockout strains for PfeIK1. Furthermore, we investigate the effects of heme degradation metabolities in eIF2α phosphorylation. We suggest that the phosphorylation and dephosphorylation mechanisms of eIF2α may be relevant for parasite response to heme and billiverdin. Our data indicates PfeIK1, PfK7 and PKA as key kinases for the development control during intraerythrocytic cycle.

Demonstramos que o P. falciparum dentro do eritrócito é capaz de usar a via de sinalização celular dependente do inositol trifosfato (IP3). Investigamos os estoques de Ca2+ intracelular sensíveis ao IP3 neste parasita e a sensibilidade ao IP3 em diferentes estágios no ciclo intraeritrocítico. Demonstramos que o hormônio melatonina é capaz de aumentar a concentração de IP3 neste parasita. Com o uso de uma coluna de afinidade ao IP3 tentamos encontrar proteínas candidatas ao receptor de IP3 em P. falciparum. Este trabalho também estuda a enzima heme oxigenade de P. falciparum (PfHO). Testamos a capacidade desta enzima em converter biliverdina (BV) em bilirubina (BR), a modulação desta atividade na presença de diversas metaloprotoporfirinas e o potencial destes compostos como antimaláricos. Reportamos que a biliverdina é capaz de modular o ciclo intraeritrocítico de P. falciparum e apresentamos a proteína enolase de P. falciparum como candidato ao sensor de BV neste parasita. / We demonstrate that P. falciparum within the erythrocyte is able to use the cellular signaling pathway dependent on inositol triphosphate (IP3). We investigated the intracellular Ca2+ stores sensitive to IP3 and explore parasite sensitivity to IP3 at different stages in the intraerythrocytic cycle. We demonstrate that melatonin hormone is capable of increasing the IP3 concentration on this parasite. Using an IP3 affinity column, we tried to find candidate proteins for IP3 receptor in P. falciparum. This work also studies the enzyme P. falciparum heme oxygenase (PfHO). We tested the ability of this enzyme to convert biliverdin (BV) in bilirubin (BR), the modulation of this activity in the presence of various metalloprotoporphyrins and the potential of these compounds as antimalarials. We reported that biliverdin is capable of modulating the intraerythrocytic cycle of P. falciparum and present P. falciparum enolase as candidate for BV sensor on this parasite.

Parkinson disease (PD) is the most common movement disorder and the second most common neurodegenerative disease. PINK1, PTEN-induced kinase 1, functions as a serine/threonine kinase as well as a protector of mitochondrial function. Mutations in PINK1 gene result in either mitochondria dysfunction or disruption of kinase signaling pathways involved in the pathogenesis of PD. In this thesis, oxidative stress levels were examined in the brain of PINK1 knockout mice, and also how heme oxygenase-1 and biliverdin reductase are affected in brain of PINK1 knockout mice. In addition, posttranslational modifications are a way to control the behavior of proteins, so posttranslational modifications of the brain of PINK1 knockout mice, including both oxidative modification and phosphorylative modification, were examined.

A malária é causada por parasitas Plasmodium falciparum, e embora vários aspectos ainda sejam desconhecidos, é sabido que a regulação do ciclo intraeritrocítico é crítica para a compreensão do ciclo celular e patogênese. A melatonina modula o ciclo de P. falciparum promovendo a sincronização, mas, o mecanismo de transdução de sinal é parcialmente caracterizado, envolvendo variações citosólicas de cálcio, AMPc e ativação da PKA. Modificações pós-traducionais participam na via de sinalização, e diversas proteínas quinase podem estar envolvidas na sinalização por melatonina. eIF2α fosforilado é capaz de ativar a tradução de mRNAs em resposta a situações desfavoráveis. O genoma de P. falciparum codifica três quinases cujo substrato é eIF2α: PfeIK1, PfeIK2 e PfPK4. Investigamos o papel da PfeIK1 na via de transdução de sinal de melatonina usando cepas nocaute para PfeIK1. Além disso, os efeitos de metabólitos da degradação do heme sobre a fosforilação de eIF2α. Sugerimos que o mecanismo de fosforilação e defosforilação de eIF2α possam ser relevantes para a resposta do parasita a hemina ou biliverdina. Nossos dados indicam a PfeIK1, juntamente com a PfK7 e PKA, como quinases-chaves no controle do desenvolvimento durante o ciclo intraeritrocítico. / Malaria is caused by Plasmodium falciparum parasites, and although some aspects are still unknown, its established that the intraerythrocytic cycle regulation is critic for understanding the cell cycle and pathogenesis of the parasite. Melatonin modulates the cycle of P. falciparum promoting synchronization; however, the signal transduction mechanism is partially characterized, and it contains cytosolic variations of calcium, AMPc and PKA activation. Post-translational modifications participate in this signal pathway, and several kinase proteins may be involved in melatonin signaling pathway. Phosphorylated eIF2α is able to activate mRNAs translation in stress conditions. The genome of P. falciparum encodes three kinases whose substrate is eIF2α: PfeIK1, PfeIK2 e PfPK4. We investigate the role of PfeIK1 in melatonin signaling pathway by using knockout strains for PfeIK1. Furthermore, we investigate the effects of heme degradation metabolities in eIF2α phosphorylation. We suggest that the phosphorylation and dephosphorylation mechanisms of eIF2α may be relevant for parasite response to heme and billiverdin. Our data indicates PfeIK1, PfK7 and PKA as key kinases for the development control during intraerythrocytic cycle.